Wall clock time and date at job start Wed Apr 1 2020 04:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35426 * 117.00083 * 2 1 4 4 N 1.32237 * 119.80080 * 359.97438 * 3 2 1 5 5 C 1.31880 * 121.80239 * 180.02562 * 4 3 2 6 6 C 1.50697 * 119.40571 * 180.02562 * 5 4 3 7 7 C 1.38356 * 121.18462 * 359.97402 * 5 4 3 8 8 C 1.38339 * 119.46011 * 359.79058 * 7 5 4 9 9 C 1.39987 * 118.34506 * 0.47899 * 8 7 5 10 10 C 1.47527 * 120.59626 * 179.75633 * 9 8 7 11 11 O 1.21587 * 119.99894 * 179.71733 * 10 9 8 12 12 N 1.34771 * 119.99820 * 359.71800 * 10 9 8 13 13 C 1.46507 * 120.00138 * 180.02562 * 12 10 9 14 14 H 1.09004 * 112.88064 * 336.34110 * 13 12 10 15 15 C 1.54241 * 113.75079 * 107.77207 * 13 12 10 16 16 C 1.53955 * 87.18863 * 139.21780 * 15 13 12 17 17 H 1.08997 * 113.66205 * 220.75128 * 16 15 13 18 18 N 1.46498 * 113.66415 * 89.78569 * 16 15 13 19 19 C 1.36943 * 119.99752 * 105.73736 * 18 16 15 20 20 H 1.08002 * 119.99793 * 0.27665 * 19 18 16 21 21 C 1.38811 * 120.00012 * 180.27737 * 19 18 16 22 22 N 1.31624 * 119.99698 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00072 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47213 * 60.00246 * 23 21 19 25 25 H 1.48502 * 109.47317 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47081 * 299.99875 * 23 21 19 27 27 C 1.52905 * 86.88352 * 335.26925 * 16 15 13 28 28 C 1.52914 * 121.14057 * 259.22722 * 27 16 15 29 29 C 1.53950 * 86.78444 * 209.37767 * 28 27 16 30 30 C 1.52911 * 121.13968 * 150.66362 * 27 16 15 31 31 H 1.08997 * 109.46781 * 59.99889 * 1 2 3 32 32 H 1.09005 * 109.47052 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.47073 * 300.00015 * 1 2 3 34 34 H 1.08999 * 109.47692 * 90.00069 * 6 5 4 35 35 H 1.09010 * 109.46631 * 209.99566 * 6 5 4 36 36 H 1.09000 * 109.47278 * 329.98933 * 6 5 4 37 37 H 1.08005 * 120.26951 * 180.02562 * 7 5 4 38 38 H 1.07999 * 120.83029 * 180.23243 * 8 7 5 39 39 H 0.97000 * 120.00377 * 0.02562 * 12 10 9 40 40 H 1.09004 * 113.58278 * 24.66765 * 15 13 12 41 41 H 1.08994 * 113.67408 * 253.78326 * 15 13 12 42 42 H 0.97001 * 120.00384 * 286.02091 * 18 16 15 43 43 H 0.96999 * 119.99739 * 180.02562 * 22 21 19 44 44 H 1.09000 * 113.66024 * 323.85226 * 28 27 16 45 45 H 1.08994 * 113.66194 * 94.90621 * 28 27 16 46 46 H 1.08995 * 113.58271 * 270.13143 * 29 28 27 47 47 H 1.08996 * 113.57661 * 139.32983 * 29 28 27 48 48 H 1.09005 * 113.65882 * 265.09435 * 30 27 16 49 49 H 1.08996 * 113.66010 * 36.14620 * 30 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2066 0.0000 4 7 1.3198 2.3132 -0.0005 5 6 1.8771 3.5084 -0.0010 6 6 1.0000 4.7338 -0.0010 7 6 3.2526 3.6575 -0.0005 8 6 4.0588 2.5333 0.0049 9 6 3.4450 1.2752 -0.0005 10 6 4.2570 0.0435 -0.0004 11 8 3.7125 -1.0436 0.0000 12 7 5.6023 0.1234 -0.0009 13 6 6.4088 -1.0997 -0.0014 14 1 5.8743 -1.9600 0.4016 15 6 7.1101 -1.3809 -1.3461 16 6 8.3417 -1.8093 -0.5276 17 1 9.2871 -1.4666 -0.9481 18 7 8.3535 -3.2336 -0.1848 19 6 9.2018 -4.0878 -0.8374 20 1 9.8653 -3.7108 -1.6016 21 6 9.2090 -5.4384 -0.5167 22 7 8.4000 -5.8979 0.4143 23 14 10.3666 -6.6035 -1.4063 24 1 11.7703 -6.1740 -1.1816 25 1 10.1804 -7.9811 -0.8840 26 1 10.0692 -6.5819 -2.8611 27 6 7.8065 -0.9136 0.5901 28 6 8.3841 0.4818 0.8301 29 6 8.0048 0.2897 2.3097 30 6 8.0915 -1.2269 2.0594 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 0.7888 5.0296 1.0266 35 1 1.5121 5.5472 -0.5152 36 1 0.0647 4.5112 -0.5146 37 1 3.6934 4.6435 -0.0006 38 1 5.1350 2.6240 0.0092 39 1 6.0368 0.9907 -0.0008 40 1 7.2755 -0.4866 -1.9470 41 1 6.6588 -2.1950 -1.9132 42 1 7.7575 -3.5723 0.5015 43 1 8.4052 -6.8416 0.6387 44 1 9.4586 0.5460 0.6586 45 1 7.8265 1.2770 0.3353 46 1 6.9995 0.6350 2.5506 47 1 8.7582 0.6606 3.0046 48 1 7.3002 -1.7967 2.5466 49 1 9.0838 -1.6430 2.2334 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078744697.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:31 Heat of formation + Delta-G solvation = 0.179268 kcal Electronic energy + Delta-G solvation = -30577.505404 eV Core-core repulsion = 26505.977876 eV Total energy + Delta-G solvation = -4071.527528 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.19991 -41.62704 -39.72737 -39.10255 -36.55296 -35.57336 -34.58238 -33.59831 -32.75944 -31.46934 -29.42492 -28.02626 -26.75865 -26.30643 -25.39800 -24.87529 -23.89558 -23.68017 -21.67264 -21.46878 -19.91253 -19.32745 -19.07813 -18.12390 -17.94631 -17.21145 -16.97230 -16.76878 -16.30879 -16.17908 -15.67764 -15.60435 -15.47665 -15.20799 -14.97897 -14.97179 -14.39338 -14.06545 -13.91830 -13.54165 -13.40709 -13.30420 -13.25719 -13.10504 -13.01122 -12.95005 -12.75936 -12.71612 -12.54187 -12.21872 -12.05373 -11.98311 -11.77613 -11.35970 -11.28033 -11.08954 -10.97799 -10.95594 -10.65099 -10.59073 -9.95940 -9.46878 -8.98521 -7.94091 -5.23220 -0.38293 0.22503 1.45965 1.49818 1.55633 1.82908 2.03474 2.11136 2.55222 2.73958 3.11115 3.37053 3.41862 3.51385 3.67060 3.71716 3.80206 3.89576 3.93152 4.05886 4.21061 4.21848 4.24743 4.32988 4.34448 4.36282 4.58177 4.63776 4.64547 4.70724 4.77616 4.82619 4.87607 4.94580 4.97639 5.00504 5.03016 5.11236 5.13902 5.17003 5.24347 5.29509 5.39595 5.49041 5.52593 5.59018 5.74883 6.19034 6.27509 6.55646 6.75459 7.27058 7.32470 8.09906 8.31805 9.29242 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016358 B = 0.002592 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.245087 B =10799.284852 C =11830.278219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.306 6.306 3 C 0.351 3.649 4 N -0.561 5.561 5 C 0.182 3.818 6 C -0.106 4.106 7 C -0.205 4.205 8 C 0.003 3.997 9 C -0.241 4.241 10 C 0.556 3.444 11 O -0.573 6.573 12 N -0.692 5.692 13 C 0.162 3.838 14 H 0.066 0.934 15 C -0.172 4.172 16 C 0.168 3.832 17 H 0.076 0.924 18 N -0.717 5.717 19 C -0.240 4.240 20 H 0.081 0.919 21 C -0.079 4.079 22 N -0.972 5.972 23 Si 0.975 3.025 24 H -0.273 1.273 25 H -0.299 1.299 26 H -0.280 1.280 27 C -0.116 4.116 28 C -0.091 4.091 29 C -0.123 4.123 30 C -0.130 4.130 31 H 0.064 0.936 32 H 0.107 0.893 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.110 0.890 36 H 0.073 0.927 37 H 0.189 0.811 38 H 0.178 0.822 39 H 0.413 0.587 40 H 0.105 0.895 41 H 0.034 0.966 42 H 0.371 0.629 43 H 0.250 0.750 44 H 0.099 0.901 45 H 0.093 0.907 46 H 0.082 0.918 47 H 0.083 0.917 48 H 0.037 0.963 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.447 30.340 0.666 32.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.211 6.211 3 C 0.171 3.829 4 N -0.287 5.287 5 C 0.044 3.956 6 C -0.163 4.163 7 C -0.225 4.225 8 C -0.022 4.022 9 C -0.247 4.247 10 C 0.344 3.656 11 O -0.453 6.453 12 N -0.345 5.345 13 C 0.057 3.943 14 H 0.084 0.916 15 C -0.214 4.214 16 C 0.057 3.943 17 H 0.094 0.906 18 N -0.353 5.353 19 C -0.371 4.371 20 H 0.099 0.901 21 C -0.271 4.271 22 N -0.623 5.623 23 Si 0.804 3.196 24 H -0.199 1.199 25 H -0.226 1.226 26 H -0.206 1.206 27 C -0.119 4.119 28 C -0.129 4.129 29 C -0.160 4.160 30 C -0.167 4.167 31 H 0.082 0.918 32 H 0.126 0.874 33 H 0.083 0.917 34 H 0.115 0.885 35 H 0.129 0.871 36 H 0.092 0.908 37 H 0.206 0.794 38 H 0.195 0.805 39 H 0.252 0.748 40 H 0.124 0.876 41 H 0.053 0.947 42 H 0.202 0.798 43 H 0.058 0.942 44 H 0.118 0.882 45 H 0.112 0.888 46 H 0.100 0.900 47 H 0.102 0.898 48 H 0.056 0.944 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.484 29.104 0.555 31.292 hybrid contribution 0.664 -1.674 -0.120 1.805 sum -10.821 27.429 0.435 29.489 Atomic orbital electron populations 1.23081 0.76171 1.04200 1.02622 1.86526 1.24066 1.24542 1.85953 1.20108 0.88782 0.85178 0.88797 1.67335 1.40595 0.98669 1.22074 1.22010 0.93865 0.91974 0.87727 1.20959 0.98862 0.91735 1.04695 1.22215 0.93006 1.01310 1.05940 1.22021 1.02347 0.88990 0.88840 1.20020 0.91224 0.95381 1.18100 1.18335 0.82773 0.88574 0.75934 1.90831 1.72645 1.30827 1.50977 1.45639 1.04625 1.09829 1.74436 1.21815 0.88621 0.86873 0.96983 0.91555 1.24254 0.99586 1.00953 0.96618 1.21082 0.95610 0.83494 0.94124 0.90627 1.42259 1.45590 1.02947 1.44533 1.19657 1.13512 0.89512 1.14464 0.90097 1.25615 1.01943 0.98921 1.00609 1.69847 1.42752 1.13777 1.35877 0.85183 0.78894 0.77595 0.77910 1.19870 1.22563 1.20587 1.23390 0.94094 0.99313 0.95070 1.22549 1.01884 0.92700 0.95743 1.22794 1.02153 0.93905 0.97164 1.22592 1.00699 0.97957 0.95487 0.91751 0.87438 0.91709 0.88452 0.87106 0.90766 0.79395 0.80456 0.74750 0.87627 0.94745 0.79762 0.94169 0.88230 0.88838 0.89974 0.89810 0.94425 0.91045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 10.38 113.37 1.18 1.95 16 2 O -0.31 -10.03 8.58 -66.39 -0.57 -10.60 16 3 C 0.35 10.02 7.51 85.13 0.64 10.65 16 4 N -0.56 -12.70 9.11 -296.06 -2.70 -15.40 16 5 C 0.18 2.66 6.78 42.58 0.29 2.95 16 6 C -0.11 -0.68 10.16 71.23 0.72 0.04 16 7 C -0.21 -2.14 9.71 22.32 0.22 -1.92 16 8 C 0.00 0.05 9.64 22.72 0.22 0.27 16 9 C -0.24 -6.25 5.90 -19.91 -0.12 -6.36 16 10 C 0.56 18.46 7.77 86.69 0.67 19.13 16 11 O -0.57 -25.69 14.79 16.83 0.25 -25.44 16 12 N -0.69 -18.68 5.24 -443.84 -2.32 -21.01 16 13 C 0.16 5.68 4.05 45.38 0.18 5.87 16 14 H 0.07 3.04 7.46 -2.38 -0.02 3.02 16 15 C -0.17 -6.24 7.71 31.33 0.24 -6.00 16 16 C 0.17 6.59 4.35 45.28 0.20 6.78 16 17 H 0.08 2.82 8.11 -2.39 -0.02 2.80 16 18 N -0.72 -37.20 5.11 -321.56 -1.64 -38.84 16 19 C -0.24 -13.55 9.97 84.03 0.84 -12.71 16 20 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 21 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 22 N -0.97 -62.04 13.06 21.65 0.28 -61.76 16 23 Si 0.98 47.37 29.55 68.60 2.03 49.40 16 24 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 25 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 26 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 27 C -0.12 -3.60 0.91 -52.31 -0.05 -3.65 16 28 C -0.09 -1.81 7.47 30.89 0.23 -1.58 16 29 C -0.12 -2.63 8.08 31.23 0.25 -2.38 16 30 C -0.13 -4.19 7.46 30.89 0.23 -3.96 16 31 H 0.06 1.33 8.10 -2.39 -0.02 1.31 16 32 H 0.11 2.13 8.14 -2.38 -0.02 2.11 16 33 H 0.06 1.33 8.10 -2.39 -0.02 1.31 16 34 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.11 0.09 8.07 -2.38 -0.02 0.07 16 36 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.19 0.27 8.06 -2.91 -0.02 0.25 16 38 H 0.18 1.19 6.51 -2.91 -0.02 1.17 16 39 H 0.41 7.25 4.83 -92.71 -0.45 6.80 16 40 H 0.11 3.02 8.14 -2.38 -0.02 3.00 16 41 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.37 21.33 7.78 -92.71 -0.72 20.61 16 43 H 0.25 15.52 8.31 -92.71 -0.77 14.75 16 44 H 0.10 1.84 8.14 -2.39 -0.02 1.83 16 45 H 0.09 1.21 6.42 -2.39 -0.02 1.20 16 46 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 47 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 48 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 49 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -84.64 401.11 1.55 -83.10 By element: Atomic # 1 Polarization: 35.84 SS G_CDS: -0.19 Total: 35.66 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: 6.41 Total: 4.89 kcal Atomic # 7 Polarization: -130.62 SS G_CDS: -6.38 Total: -137.00 kcal Atomic # 8 Polarization: -35.71 SS G_CDS: -0.32 Total: -36.04 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.40 kcal Total: -84.64 1.55 -83.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078744697.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.274 kcal (2) G-P(sol) polarization free energy of solvation -84.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds