Wall clock time and date at job start Wed Apr 1 2020 04:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35424 * 117.00269 * 2 1 4 4 N 1.32244 * 119.79502 * 0.02562 * 3 2 1 5 5 C 1.31882 * 121.79499 * 180.02562 * 4 3 2 6 6 C 1.50703 * 119.40635 * 179.97438 * 5 4 3 7 7 C 1.38360 * 121.18804 * 359.97438 * 5 4 3 8 8 C 1.38331 * 119.45718 * 0.02562 * 7 5 4 9 9 C 1.39996 * 118.35063 * 359.97438 * 8 7 5 10 10 C 1.47524 * 120.59563 * 179.97438 * 9 8 7 11 11 O 1.21592 * 119.99798 * 180.02562 * 10 9 8 12 12 N 1.34775 * 120.00273 * 0.02562 * 10 9 8 13 13 C 1.46494 * 120.00171 * 179.97438 * 12 10 9 14 14 H 1.09001 * 112.88640 * 336.35204 * 13 12 10 15 15 C 1.53951 * 113.66058 * 107.81609 * 13 12 10 16 16 C 1.53952 * 87.29949 * 89.74122 * 15 13 12 17 17 H 1.08989 * 113.66770 * 139.20150 * 16 15 13 18 18 N 1.46496 * 113.74475 * 270.25299 * 16 15 13 19 19 C 1.36940 * 120.00081 * 252.22244 * 18 16 15 20 20 H 1.08000 * 119.99619 * 0.02562 * 19 18 16 21 21 C 1.38809 * 120.00120 * 180.02562 * 19 18 16 22 22 N 1.31628 * 119.99983 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00106 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46747 * 60.00064 * 23 21 19 25 25 H 1.48495 * 109.47243 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47081 * 300.00633 * 23 21 19 27 27 C 1.52908 * 113.66690 * 205.00331 * 13 12 10 28 28 C 1.52910 * 121.13893 * 144.71078 * 27 13 12 29 29 C 1.53950 * 86.78103 * 209.37905 * 28 27 13 30 30 C 1.52912 * 121.13727 * 36.14571 * 27 13 12 31 31 H 1.09004 * 109.47280 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46915 * 299.99917 * 1 2 3 33 33 H 1.09002 * 109.47151 * 60.00239 * 1 2 3 34 34 H 1.08998 * 109.47340 * 89.99842 * 6 5 4 35 35 H 1.08995 * 109.47176 * 210.00549 * 6 5 4 36 36 H 1.09005 * 109.46820 * 329.99664 * 6 5 4 37 37 H 1.07996 * 120.26983 * 180.02562 * 7 5 4 38 38 H 1.08000 * 120.82607 * 179.97438 * 8 7 5 39 39 H 0.97008 * 119.99720 * 0.02562 * 12 10 9 40 40 H 1.09002 * 113.58189 * 204.34549 * 15 13 12 41 41 H 1.09004 * 113.58305 * 335.13967 * 15 13 12 42 42 H 0.97006 * 120.00680 * 72.22797 * 18 16 15 43 43 H 0.97002 * 119.99479 * 179.97438 * 22 21 19 44 44 H 1.08996 * 113.66055 * 323.85564 * 28 27 13 45 45 H 1.08998 * 113.66246 * 94.91134 * 28 27 13 46 46 H 1.09003 * 113.58265 * 270.12739 * 29 28 27 47 47 H 1.09002 * 113.58079 * 139.33593 * 29 28 27 48 48 H 1.09000 * 113.66238 * 265.09675 * 30 27 13 49 49 H 1.08999 * 113.65770 * 36.15183 * 30 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2066 0.0000 4 7 1.3197 2.3131 0.0005 5 6 1.8771 3.5084 0.0000 6 6 1.0000 4.7339 0.0001 7 6 3.2527 3.6575 -0.0005 8 6 4.0588 2.5333 -0.0011 9 6 3.4449 1.2751 -0.0005 10 6 4.2569 0.0434 -0.0017 11 8 3.7124 -1.0437 -0.0017 12 7 5.6023 0.1233 -0.0027 13 6 6.4087 -1.0998 -0.0033 14 1 5.8743 -1.9600 0.4000 15 6 7.1079 -1.3782 -1.3463 16 6 8.2948 -0.5534 -0.8162 17 1 9.2677 -0.9780 -1.0633 18 7 8.2029 0.8763 -1.1218 19 6 9.0275 1.4293 -2.0650 20 1 9.7452 0.8112 -2.5838 21 6 8.9407 2.7842 -2.3542 22 7 8.0663 3.5375 -1.7215 23 14 10.0660 3.5386 -3.6403 24 1 9.8350 2.8768 -4.9495 25 1 9.7767 4.9901 -3.7610 26 1 11.4812 3.3486 -3.2325 27 6 7.8066 -0.9136 0.5875 28 6 8.4772 -2.0240 1.3971 29 6 9.2111 -0.9059 2.1595 30 6 8.0460 0.0229 1.7724 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 0.7889 5.0296 1.0277 35 1 1.5120 5.5471 -0.5142 36 1 0.0647 4.5112 -0.5135 37 1 3.6934 4.6434 -0.0005 38 1 5.1349 2.6240 -0.0019 39 1 6.0367 0.9906 -0.0024 40 1 7.3444 -2.4304 -1.5050 41 1 6.6077 -0.9228 -2.2011 42 1 7.5581 1.4315 -0.6560 43 1 8.0060 4.4844 -1.9233 44 1 7.7842 -2.5936 2.0162 45 1 9.1388 -2.6576 0.8064 46 1 10.1626 -0.6228 1.7092 47 1 9.2870 -1.0864 3.2318 48 1 8.3629 1.0244 1.4813 49 1 7.2317 0.0286 2.4969 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078744699.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:36 Heat of formation + Delta-G solvation = 25.372308 kcal Electronic energy + Delta-G solvation = -31364.522877 eV Core-core repulsion = 27294.087801 eV Total energy + Delta-G solvation = -4070.435076 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.93379 -40.36159 -38.30764 -37.95907 -35.21342 -33.71136 -33.22556 -31.95094 -31.62939 -29.87339 -28.44556 -26.91840 -25.43626 -24.67960 -24.12942 -23.34877 -22.78416 -22.23402 -20.57607 -19.91872 -18.59995 -18.01708 -17.12483 -16.94973 -16.64794 -16.04720 -15.46919 -15.14799 -15.00272 -14.56587 -14.41533 -14.32910 -14.13335 -14.11568 -13.92657 -13.38623 -12.95532 -12.81420 -12.63962 -12.55024 -12.33603 -12.23522 -12.09140 -11.88326 -11.70506 -11.49431 -11.33126 -11.02112 -10.93220 -10.88152 -10.66889 -10.26782 -10.07073 -9.95873 -9.79451 -9.78105 -9.71111 -9.41135 -9.29586 -8.91240 -8.51369 -8.28028 -7.10212 -5.92097 -3.19390 0.77059 1.35389 3.11150 3.13380 3.37530 3.41798 3.42435 3.46239 3.95132 4.12187 4.46499 4.72751 4.79849 4.91466 4.98127 5.03258 5.10795 5.19176 5.23957 5.27614 5.30531 5.33076 5.41193 5.43166 5.44660 5.49058 5.60851 5.67654 5.82416 5.86090 5.92436 5.98413 6.01347 6.02958 6.05264 6.17310 6.18064 6.30575 6.38091 6.45295 6.52640 6.63780 6.71797 6.81876 6.97019 7.15175 7.29076 7.61774 7.78494 7.98623 8.28427 8.64699 9.39112 9.92919 10.27143 11.31154 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008758 B = 0.004171 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3196.377008 B = 6711.677079 C = 8854.717826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.271 6.271 3 C 0.372 3.628 4 N -0.550 5.550 5 C 0.185 3.815 6 C -0.106 4.106 7 C -0.213 4.213 8 C 0.006 3.994 9 C -0.214 4.214 10 C 0.567 3.433 11 O -0.530 6.530 12 N -0.696 5.696 13 C 0.140 3.860 14 H 0.092 0.908 15 C -0.185 4.185 16 C 0.191 3.809 17 H 0.066 0.934 18 N -0.699 5.699 19 C -0.241 4.241 20 H 0.073 0.927 21 C -0.009 4.009 22 N -0.935 5.935 23 Si 0.909 3.091 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.130 4.130 28 C -0.106 4.106 29 C -0.134 4.134 30 C -0.127 4.127 31 H 0.095 0.905 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.145 0.855 38 H 0.155 0.845 39 H 0.404 0.596 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.378 0.622 43 H 0.257 0.743 44 H 0.078 0.922 45 H 0.068 0.932 46 H 0.081 0.919 47 H 0.059 0.941 48 H 0.079 0.921 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.182 -2.371 7.339 12.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.175 6.175 3 C 0.192 3.808 4 N -0.276 5.276 5 C 0.048 3.952 6 C -0.163 4.163 7 C -0.233 4.233 8 C -0.020 4.020 9 C -0.220 4.220 10 C 0.353 3.647 11 O -0.408 6.408 12 N -0.349 5.349 13 C 0.034 3.966 14 H 0.110 0.890 15 C -0.228 4.228 16 C 0.079 3.921 17 H 0.085 0.915 18 N -0.339 5.339 19 C -0.372 4.372 20 H 0.091 0.909 21 C -0.205 4.205 22 N -0.583 5.583 23 Si 0.740 3.260 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.212 1.212 27 C -0.132 4.132 28 C -0.144 4.144 29 C -0.171 4.171 30 C -0.164 4.164 31 H 0.113 0.887 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.163 0.837 38 H 0.172 0.828 39 H 0.243 0.757 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.213 0.787 43 H 0.067 0.933 44 H 0.097 0.903 45 H 0.086 0.914 46 H 0.099 0.901 47 H 0.078 0.922 48 H 0.098 0.902 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.234 -3.420 7.192 13.770 hybrid contribution 1.193 1.308 -0.699 1.903 sum -10.041 -2.112 6.493 12.143 Atomic orbital electron populations 1.22896 0.78082 1.02924 1.02058 1.86540 1.21869 1.23111 1.85983 1.19749 0.88052 0.84811 0.88206 1.67226 1.40266 0.98196 1.21918 1.21138 0.92211 0.91850 0.89974 1.20793 0.99242 0.92980 1.03317 1.21775 0.93538 1.00365 1.07668 1.21887 1.01567 0.90257 0.88291 1.20032 0.91422 0.95187 1.15379 1.17724 0.82066 0.88155 0.76716 1.90772 1.71796 1.28380 1.49837 1.45610 1.05127 1.09999 1.74117 1.21613 0.90010 0.87261 0.97668 0.89001 1.24278 1.00648 1.00430 0.97401 1.20885 0.95594 0.86225 0.89435 0.91545 1.42087 1.43532 1.02085 1.46162 1.19239 1.12760 0.91970 1.13214 0.90909 1.24688 0.99432 0.96231 1.00101 1.69586 1.37953 1.05921 1.44860 0.86234 0.80243 0.78124 0.81377 1.21261 1.21678 1.21234 1.23579 0.95483 0.98146 0.96029 1.22508 0.98684 0.95507 0.97728 1.22748 0.98303 0.96922 0.99165 1.22575 0.97762 0.99295 0.96790 0.88655 0.92498 0.92462 0.89994 0.90045 0.90416 0.83732 0.82760 0.75728 0.90409 0.90965 0.78666 0.93319 0.90311 0.91363 0.90085 0.92223 0.90236 0.90976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.38 101.05 1.05 1.48 16 2 O -0.27 -4.58 8.58 -39.73 -0.34 -4.92 16 3 C 0.37 6.31 7.51 -16.61 -0.12 6.18 16 4 N -0.55 -8.22 9.11 -9.21 -0.08 -8.31 16 5 C 0.19 2.41 6.78 -82.52 -0.56 1.85 16 6 C -0.11 -0.94 10.16 36.01 0.37 -0.57 16 7 C -0.21 -2.86 9.71 -39.50 -0.38 -3.25 16 8 C 0.01 0.09 9.64 -38.89 -0.37 -0.29 16 9 C -0.21 -3.73 5.90 -104.69 -0.62 -4.35 16 10 C 0.57 10.84 7.77 -12.48 -0.10 10.74 16 11 O -0.53 -11.37 14.79 -16.49 -0.24 -11.61 16 12 N -0.70 -12.57 4.89 -54.42 -0.27 -12.84 16 13 C 0.14 2.43 4.12 -67.49 -0.28 2.16 16 14 H 0.09 1.62 7.46 -51.93 -0.39 1.23 16 15 C -0.19 -3.36 7.68 -25.75 -0.20 -3.56 16 16 C 0.19 3.64 4.36 -67.48 -0.29 3.34 16 17 H 0.07 1.27 8.10 -51.94 -0.42 0.85 16 18 N -0.70 -15.96 4.74 -52.99 -0.25 -16.21 16 19 C -0.24 -6.23 9.97 -15.06 -0.15 -6.38 16 20 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 21 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 22 N -0.94 -25.41 13.06 55.49 0.72 -24.68 16 23 Si 0.91 21.31 29.55 -169.99 -5.02 16.28 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 27 C -0.13 -2.09 0.78 -154.71 -0.12 -2.21 16 28 C -0.11 -1.42 7.84 -26.28 -0.21 -1.63 16 29 C -0.13 -1.83 8.08 -25.75 -0.21 -2.04 16 30 C -0.13 -1.98 7.27 -26.28 -0.19 -2.17 16 31 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 33 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.60 8.07 -51.93 -0.42 0.18 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.14 1.62 8.06 -52.49 -0.42 1.19 16 38 H 0.15 2.47 6.51 -52.49 -0.34 2.13 16 39 H 0.40 7.43 4.25 -40.82 -0.17 7.26 16 40 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 41 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 42 H 0.38 8.78 5.14 -40.82 -0.21 8.57 16 43 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 44 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 46 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.08 1.43 7.58 -51.93 -0.39 1.04 16 49 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 398.43 15.07 6.00 6.00 Total: -1.00 -30.67 398.43 -9.35 -40.02 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: -7.38 Total: 17.27 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -2.48 Total: -1.01 kcal Atomic # 7 Polarization: -62.16 SS G_CDS: 0.12 Total: -62.04 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.58 Total: -16.53 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.67 -9.35 -40.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078744699.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.391 kcal (2) G-P(sol) polarization free energy of solvation -30.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds