Wall clock time and date at job start Wed Apr 1 2020 04:24:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.35424 * 117.00269 * 2 1
4 4 N 1.32244 * 119.79502 * 0.02562 * 3 2 1
5 5 C 1.31882 * 121.79499 * 180.02562 * 4 3 2
6 6 C 1.50703 * 119.40635 * 179.97438 * 5 4 3
7 7 C 1.38360 * 121.18804 * 359.97438 * 5 4 3
8 8 C 1.38331 * 119.45718 * 0.02562 * 7 5 4
9 9 C 1.39996 * 118.35063 * 359.97438 * 8 7 5
10 10 C 1.47524 * 120.59563 * 179.97438 * 9 8 7
11 11 O 1.21592 * 119.99798 * 180.02562 * 10 9 8
12 12 N 1.34775 * 120.00273 * 0.02562 * 10 9 8
13 13 C 1.46494 * 120.00171 * 179.97438 * 12 10 9
14 14 H 1.09001 * 112.88640 * 336.35204 * 13 12 10
15 15 C 1.53951 * 113.66058 * 107.81609 * 13 12 10
16 16 C 1.53952 * 87.29949 * 89.74122 * 15 13 12
17 17 H 1.08989 * 113.66770 * 139.20150 * 16 15 13
18 18 N 1.46496 * 113.74475 * 270.25299 * 16 15 13
19 19 C 1.36940 * 120.00081 * 252.22244 * 18 16 15
20 20 H 1.08000 * 119.99619 * 0.02562 * 19 18 16
21 21 C 1.38809 * 120.00120 * 180.02562 * 19 18 16
22 22 N 1.31628 * 119.99983 * 0.02562 * 21 19 18
23 23 Si 1.86803 * 120.00106 * 179.97438 * 21 19 18
24 24 H 1.48498 * 109.46747 * 60.00064 * 23 21 19
25 25 H 1.48495 * 109.47243 * 180.02562 * 23 21 19
26 26 H 1.48503 * 109.47081 * 300.00633 * 23 21 19
27 27 C 1.52908 * 113.66690 * 205.00331 * 13 12 10
28 28 C 1.52910 * 121.13893 * 144.71078 * 27 13 12
29 29 C 1.53950 * 86.78103 * 209.37905 * 28 27 13
30 30 C 1.52912 * 121.13727 * 36.14571 * 27 13 12
31 31 H 1.09004 * 109.47280 * 179.97438 * 1 2 3
32 32 H 1.08998 * 109.46915 * 299.99917 * 1 2 3
33 33 H 1.09002 * 109.47151 * 60.00239 * 1 2 3
34 34 H 1.08998 * 109.47340 * 89.99842 * 6 5 4
35 35 H 1.08995 * 109.47176 * 210.00549 * 6 5 4
36 36 H 1.09005 * 109.46820 * 329.99664 * 6 5 4
37 37 H 1.07996 * 120.26983 * 180.02562 * 7 5 4
38 38 H 1.08000 * 120.82607 * 179.97438 * 8 7 5
39 39 H 0.97008 * 119.99720 * 0.02562 * 12 10 9
40 40 H 1.09002 * 113.58189 * 204.34549 * 15 13 12
41 41 H 1.09004 * 113.58305 * 335.13967 * 15 13 12
42 42 H 0.97006 * 120.00680 * 72.22797 * 18 16 15
43 43 H 0.97002 * 119.99479 * 179.97438 * 22 21 19
44 44 H 1.08996 * 113.66055 * 323.85564 * 28 27 13
45 45 H 1.08998 * 113.66246 * 94.91134 * 28 27 13
46 46 H 1.09003 * 113.58265 * 270.12739 * 29 28 27
47 47 H 1.09002 * 113.58079 * 139.33593 * 29 28 27
48 48 H 1.09000 * 113.66238 * 265.09675 * 30 27 13
49 49 H 1.08999 * 113.65770 * 36.15183 * 30 27 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0439 1.2066 0.0000
4 7 1.3197 2.3131 0.0005
5 6 1.8771 3.5084 0.0000
6 6 1.0000 4.7339 0.0001
7 6 3.2527 3.6575 -0.0005
8 6 4.0588 2.5333 -0.0011
9 6 3.4449 1.2751 -0.0005
10 6 4.2569 0.0434 -0.0017
11 8 3.7124 -1.0437 -0.0017
12 7 5.6023 0.1233 -0.0027
13 6 6.4087 -1.0998 -0.0033
14 1 5.8743 -1.9600 0.4000
15 6 7.1079 -1.3782 -1.3463
16 6 8.2948 -0.5534 -0.8162
17 1 9.2677 -0.9780 -1.0633
18 7 8.2029 0.8763 -1.1218
19 6 9.0275 1.4293 -2.0650
20 1 9.7452 0.8112 -2.5838
21 6 8.9407 2.7842 -2.3542
22 7 8.0663 3.5375 -1.7215
23 14 10.0660 3.5386 -3.6403
24 1 9.8350 2.8768 -4.9495
25 1 9.7767 4.9901 -3.7610
26 1 11.4812 3.3486 -3.2325
27 6 7.8066 -0.9136 0.5875
28 6 8.4772 -2.0240 1.3971
29 6 9.2111 -0.9059 2.1595
30 6 8.0460 0.0229 1.7724
31 1 -0.3634 -1.0277 -0.0005
32 1 -0.3633 0.5138 0.8900
33 1 -0.3633 0.5138 -0.8900
34 1 0.7889 5.0296 1.0277
35 1 1.5120 5.5471 -0.5142
36 1 0.0647 4.5112 -0.5135
37 1 3.6934 4.6434 -0.0005
38 1 5.1349 2.6240 -0.0019
39 1 6.0367 0.9906 -0.0024
40 1 7.3444 -2.4304 -1.5050
41 1 6.6077 -0.9228 -2.2011
42 1 7.5581 1.4315 -0.6560
43 1 8.0060 4.4844 -1.9233
44 1 7.7842 -2.5936 2.0162
45 1 9.1388 -2.6576 0.8064
46 1 10.1626 -0.6228 1.7092
47 1 9.2870 -1.0864 3.2318
48 1 8.3629 1.0244 1.4813
49 1 7.2317 0.0286 2.4969
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001078744699.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:24:36
Heat of formation + Delta-G solvation = 25.372308 kcal
Electronic energy + Delta-G solvation = -31364.522877 eV
Core-core repulsion = 27294.087801 eV
Total energy + Delta-G solvation = -4070.435076 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-40.93379 -40.36159 -38.30764 -37.95907 -35.21342 -33.71136 -33.22556 -31.95094
-31.62939 -29.87339 -28.44556 -26.91840 -25.43626 -24.67960 -24.12942 -23.34877
-22.78416 -22.23402 -20.57607 -19.91872 -18.59995 -18.01708 -17.12483 -16.94973
-16.64794 -16.04720 -15.46919 -15.14799 -15.00272 -14.56587 -14.41533 -14.32910
-14.13335 -14.11568 -13.92657 -13.38623 -12.95532 -12.81420 -12.63962 -12.55024
-12.33603 -12.23522 -12.09140 -11.88326 -11.70506 -11.49431 -11.33126 -11.02112
-10.93220 -10.88152 -10.66889 -10.26782 -10.07073 -9.95873 -9.79451 -9.78105
-9.71111 -9.41135 -9.29586 -8.91240 -8.51369 -8.28028 -7.10212 -5.92097
-3.19390 0.77059 1.35389 3.11150 3.13380 3.37530 3.41798 3.42435
3.46239 3.95132 4.12187 4.46499 4.72751 4.79849 4.91466 4.98127
5.03258 5.10795 5.19176 5.23957 5.27614 5.30531 5.33076 5.41193
5.43166 5.44660 5.49058 5.60851 5.67654 5.82416 5.86090 5.92436
5.98413 6.01347 6.02958 6.05264 6.17310 6.18064 6.30575 6.38091
6.45295 6.52640 6.63780 6.71797 6.81876 6.97019 7.15175 7.29076
7.61774 7.78494 7.98623 8.28427 8.64699 9.39112 9.92919 10.27143
11.31154
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.008758 B = 0.004171 C = 0.003161
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3196.377008 B = 6711.677079 C = 8854.717826
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.036 3.964
2 O -0.271 6.271
3 C 0.372 3.628
4 N -0.550 5.550
5 C 0.185 3.815
6 C -0.106 4.106
7 C -0.213 4.213
8 C 0.006 3.994
9 C -0.214 4.214
10 C 0.567 3.433
11 O -0.530 6.530
12 N -0.696 5.696
13 C 0.140 3.860
14 H 0.092 0.908
15 C -0.185 4.185
16 C 0.191 3.809
17 H 0.066 0.934
18 N -0.699 5.699
19 C -0.241 4.241
20 H 0.073 0.927
21 C -0.009 4.009
22 N -0.935 5.935
23 Si 0.909 3.091
24 H -0.286 1.286
25 H -0.291 1.291
26 H -0.286 1.286
27 C -0.130 4.130
28 C -0.106 4.106
29 C -0.134 4.134
30 C -0.127 4.127
31 H 0.095 0.905
32 H 0.056 0.944
33 H 0.057 0.943
34 H 0.082 0.918
35 H 0.081 0.919
36 H 0.077 0.923
37 H 0.145 0.855
38 H 0.155 0.845
39 H 0.404 0.596
40 H 0.077 0.923
41 H 0.072 0.928
42 H 0.378 0.622
43 H 0.257 0.743
44 H 0.078 0.922
45 H 0.068 0.932
46 H 0.081 0.919
47 H 0.059 0.941
48 H 0.079 0.921
49 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.182 -2.371 7.339 12.774
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.060 4.060
2 O -0.175 6.175
3 C 0.192 3.808
4 N -0.276 5.276
5 C 0.048 3.952
6 C -0.163 4.163
7 C -0.233 4.233
8 C -0.020 4.020
9 C -0.220 4.220
10 C 0.353 3.647
11 O -0.408 6.408
12 N -0.349 5.349
13 C 0.034 3.966
14 H 0.110 0.890
15 C -0.228 4.228
16 C 0.079 3.921
17 H 0.085 0.915
18 N -0.339 5.339
19 C -0.372 4.372
20 H 0.091 0.909
21 C -0.205 4.205
22 N -0.583 5.583
23 Si 0.740 3.260
24 H -0.213 1.213
25 H -0.217 1.217
26 H -0.212 1.212
27 C -0.132 4.132
28 C -0.144 4.144
29 C -0.171 4.171
30 C -0.164 4.164
31 H 0.113 0.887
32 H 0.075 0.925
33 H 0.075 0.925
34 H 0.100 0.900
35 H 0.100 0.900
36 H 0.096 0.904
37 H 0.163 0.837
38 H 0.172 0.828
39 H 0.243 0.757
40 H 0.096 0.904
41 H 0.090 0.910
42 H 0.213 0.787
43 H 0.067 0.933
44 H 0.097 0.903
45 H 0.086 0.914
46 H 0.099 0.901
47 H 0.078 0.922
48 H 0.098 0.902
49 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -11.234 -3.420 7.192 13.770
hybrid contribution 1.193 1.308 -0.699 1.903
sum -10.041 -2.112 6.493 12.143
Atomic orbital electron populations
1.22896 0.78082 1.02924 1.02058 1.86540 1.21869 1.23111 1.85983
1.19749 0.88052 0.84811 0.88206 1.67226 1.40266 0.98196 1.21918
1.21138 0.92211 0.91850 0.89974 1.20793 0.99242 0.92980 1.03317
1.21775 0.93538 1.00365 1.07668 1.21887 1.01567 0.90257 0.88291
1.20032 0.91422 0.95187 1.15379 1.17724 0.82066 0.88155 0.76716
1.90772 1.71796 1.28380 1.49837 1.45610 1.05127 1.09999 1.74117
1.21613 0.90010 0.87261 0.97668 0.89001 1.24278 1.00648 1.00430
0.97401 1.20885 0.95594 0.86225 0.89435 0.91545 1.42087 1.43532
1.02085 1.46162 1.19239 1.12760 0.91970 1.13214 0.90909 1.24688
0.99432 0.96231 1.00101 1.69586 1.37953 1.05921 1.44860 0.86234
0.80243 0.78124 0.81377 1.21261 1.21678 1.21234 1.23579 0.95483
0.98146 0.96029 1.22508 0.98684 0.95507 0.97728 1.22748 0.98303
0.96922 0.99165 1.22575 0.97762 0.99295 0.96790 0.88655 0.92498
0.92462 0.89994 0.90045 0.90416 0.83732 0.82760 0.75728 0.90409
0.90965 0.78666 0.93319 0.90311 0.91363 0.90085 0.92223 0.90236
0.90976
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.43 10.38 101.05 1.05 1.48 16
2 O -0.27 -4.58 8.58 -39.73 -0.34 -4.92 16
3 C 0.37 6.31 7.51 -16.61 -0.12 6.18 16
4 N -0.55 -8.22 9.11 -9.21 -0.08 -8.31 16
5 C 0.19 2.41 6.78 -82.52 -0.56 1.85 16
6 C -0.11 -0.94 10.16 36.01 0.37 -0.57 16
7 C -0.21 -2.86 9.71 -39.50 -0.38 -3.25 16
8 C 0.01 0.09 9.64 -38.89 -0.37 -0.29 16
9 C -0.21 -3.73 5.90 -104.69 -0.62 -4.35 16
10 C 0.57 10.84 7.77 -12.48 -0.10 10.74 16
11 O -0.53 -11.37 14.79 -16.49 -0.24 -11.61 16
12 N -0.70 -12.57 4.89 -54.42 -0.27 -12.84 16
13 C 0.14 2.43 4.12 -67.49 -0.28 2.16 16
14 H 0.09 1.62 7.46 -51.93 -0.39 1.23 16
15 C -0.19 -3.36 7.68 -25.75 -0.20 -3.56 16
16 C 0.19 3.64 4.36 -67.48 -0.29 3.34 16
17 H 0.07 1.27 8.10 -51.94 -0.42 0.85 16
18 N -0.70 -15.96 4.74 -52.99 -0.25 -16.21 16
19 C -0.24 -6.23 9.97 -15.06 -0.15 -6.38 16
20 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16
21 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16
22 N -0.94 -25.41 13.06 55.49 0.72 -24.68 16
23 Si 0.91 21.31 29.55 -169.99 -5.02 16.28 16
24 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16
25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16
26 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16
27 C -0.13 -2.09 0.78 -154.71 -0.12 -2.21 16
28 C -0.11 -1.42 7.84 -26.28 -0.21 -1.63 16
29 C -0.13 -1.83 8.08 -25.75 -0.21 -2.04 16
30 C -0.13 -1.98 7.27 -26.28 -0.19 -2.17 16
31 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16
32 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16
33 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16
34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16
35 H 0.08 0.60 8.07 -51.93 -0.42 0.18 16
36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16
37 H 0.14 1.62 8.06 -52.49 -0.42 1.19 16
38 H 0.15 2.47 6.51 -52.49 -0.34 2.13 16
39 H 0.40 7.43 4.25 -40.82 -0.17 7.26 16
40 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16
41 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16
42 H 0.38 8.78 5.14 -40.82 -0.21 8.57 16
43 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16
44 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16
45 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16
46 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16
47 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16
48 H 0.08 1.43 7.58 -51.93 -0.39 1.04 16
49 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16
LS Contribution 398.43 15.07 6.00 6.00
Total: -1.00 -30.67 398.43 -9.35 -40.02
By element:
Atomic # 1 Polarization: 24.66 SS G_CDS: -7.38 Total: 17.27 kcal
Atomic # 6 Polarization: 1.48 SS G_CDS: -2.48 Total: -1.01 kcal
Atomic # 7 Polarization: -62.16 SS G_CDS: 0.12 Total: -62.04 kcal
Atomic # 8 Polarization: -15.95 SS G_CDS: -0.58 Total: -16.53 kcal
Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal
Total LS contribution 6.00 Total: 6.00 kcal
Total: -30.67 -9.35 -40.02 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001078744699.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 65.391 kcal
(2) G-P(sol) polarization free energy of solvation -30.670 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.721 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.349 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.019 kcal
(6) G-S(sol) free energy of system = (1) + (5) 25.372 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds