Wall clock time and date at job start Wed Apr 1 2020 04:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38228 * 120.42109 * 2 1 4 4 N 1.31851 * 120.76192 * 179.97438 * 3 2 1 5 5 C 1.31884 * 121.73195 * 359.97438 * 4 3 2 6 6 C 1.38180 * 120.75974 * 359.97438 * 5 4 3 7 7 C 1.50703 * 120.41821 * 180.02562 * 6 5 4 8 8 C 1.52993 * 109.47263 * 89.99662 * 7 6 5 9 9 C 1.50703 * 109.47263 * 180.02562 * 8 7 6 10 10 O 1.21284 * 119.99472 * 0.02562 * 9 8 7 11 11 N 1.34769 * 120.00135 * 180.02562 * 9 8 7 12 12 C 1.47044 * 120.11918 * 359.72586 * 11 9 8 13 13 C 1.53993 * 107.12081 * 130.15770 * 12 11 9 14 14 O 1.42645 * 108.29293 * 55.84514 * 13 12 11 15 15 C 1.42769 * 115.69045 * 295.40960 * 14 13 12 16 16 H 1.08997 * 112.23044 * 290.73075 * 15 14 13 17 17 C 1.55408 * 107.09135 * 166.05099 * 15 14 13 18 18 N 1.47475 * 104.78387 * 281.69107 * 17 15 14 19 19 C 1.36941 * 125.68824 * 155.59892 * 18 17 15 20 20 H 1.07999 * 119.99913 * 353.78083 * 19 18 17 21 21 C 1.38817 * 120.00014 * 173.78391 * 19 18 17 22 22 N 1.31619 * 119.99932 * 6.76057 * 21 19 18 23 23 Si 1.86799 * 119.99749 * 186.76376 * 21 19 18 24 24 H 1.48489 * 109.47394 * 94.98536 * 23 21 19 25 25 H 1.48506 * 109.46780 * 214.98601 * 23 21 19 26 26 H 1.48502 * 109.47304 * 334.98072 * 23 21 19 27 27 C 1.47218 * 108.62416 * 335.60097 * 18 17 15 28 28 C 1.45668 * 120.11917 * 180.02562 * 11 9 8 29 29 H 1.09009 * 109.95164 * 345.48505 * 28 11 9 30 30 C 1.38629 * 120.41719 * 180.21463 * 2 1 3 31 31 H 1.08999 * 109.47627 * 89.99679 * 1 2 3 32 32 H 1.08998 * 109.47341 * 210.00079 * 1 2 3 33 33 H 1.09005 * 109.47132 * 329.99739 * 1 2 3 34 34 H 1.08003 * 119.61651 * 359.94953 * 3 2 1 35 35 H 1.07992 * 119.62510 * 180.02562 * 5 4 3 36 36 H 1.09002 * 109.46803 * 329.99558 * 7 6 5 37 37 H 1.09005 * 109.47178 * 210.00024 * 7 6 5 38 38 H 1.08995 * 109.47321 * 300.00297 * 8 7 6 39 39 H 1.09006 * 109.47044 * 60.00642 * 8 7 6 40 40 H 1.09007 * 109.88165 * 249.67876 * 12 11 9 41 41 H 1.08995 * 109.88150 * 10.75715 * 12 11 9 42 42 H 1.09002 * 109.83571 * 296.08467 * 13 12 11 43 43 H 1.09007 * 109.61617 * 175.47925 * 13 12 11 44 44 H 1.09001 * 110.37386 * 40.52036 * 17 15 14 45 45 H 1.09005 * 110.37202 * 162.86741 * 17 15 14 46 46 H 0.96994 * 120.00147 * 180.02562 * 22 21 19 47 47 H 1.09008 * 109.95583 * 241.89024 * 27 18 17 48 48 H 1.08995 * 109.96145 * 120.65602 * 27 18 17 49 49 H 1.07997 * 120.79222 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.1998 0.0005 5 6 4.2257 0.0823 0.0015 6 6 3.5947 -1.1471 0.0026 7 6 4.4026 -2.4193 0.0044 8 6 4.6754 -2.8482 1.4474 9 6 5.4838 -4.1201 1.4491 10 8 5.8099 -4.6327 0.3995 11 7 5.8443 -4.6879 2.6170 12 6 5.4554 -4.0653 3.8912 13 6 4.8228 -5.1681 4.7601 14 8 5.7610 -6.2357 4.8816 15 6 6.0846 -6.9162 3.6689 16 1 5.2482 -7.5032 3.2896 17 6 7.3518 -7.7711 3.9491 18 7 8.4707 -6.8114 3.9041 19 6 9.6804 -6.9649 4.5273 20 1 9.8423 -7.7988 5.1942 21 6 10.6985 -6.0486 4.3019 22 7 10.4621 -4.9623 3.5972 23 14 12.4040 -6.3573 4.9986 24 1 13.2481 -7.0140 3.9685 25 1 13.0194 -5.0643 5.3921 26 1 12.3003 -7.2387 6.1892 27 6 8.0702 -5.6608 3.0776 28 6 6.6261 -5.9169 2.6217 29 1 6.6112 -6.3710 1.6308 30 6 2.2088 -1.1955 -0.0045 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3634 0.8900 0.5139 34 1 1.6675 2.1277 -0.0008 35 1 5.3046 0.1284 0.0023 36 1 5.3488 -2.2495 -0.5093 37 1 3.8462 -3.2037 -0.5088 38 1 5.2318 -2.0639 1.9606 39 1 3.7291 -3.0181 1.9611 40 1 6.3355 -3.6569 4.3881 41 1 4.7296 -3.2726 3.7101 42 1 3.9104 -5.5330 4.2883 43 1 4.5915 -4.7684 5.7475 44 1 7.2876 -8.2333 4.9342 45 1 7.4738 -8.5326 3.1788 46 1 11.1736 -4.3222 3.4393 47 1 8.7255 -5.5798 2.2103 48 1 8.1175 -4.7450 3.6668 49 1 1.6887 -2.1419 -0.0084 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083138919.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:40 Heat of formation + Delta-G solvation = -11.244659 kcal Electronic energy + Delta-G solvation = -30561.951671 eV Core-core repulsion = 26489.928765 eV Total energy + Delta-G solvation = -4072.022906 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.68335 -40.28265 -38.41527 -35.73094 -34.80917 -34.59509 -33.87718 -32.27552 -30.60942 -29.66234 -27.88747 -27.60728 -27.31024 -25.34014 -24.14390 -23.24707 -23.21564 -21.30631 -20.40895 -20.22671 -18.37841 -17.37474 -17.14485 -17.04437 -16.93660 -16.44943 -15.62487 -15.40673 -15.00235 -14.75850 -14.60106 -14.33969 -14.28168 -13.76117 -13.67631 -13.39072 -13.31824 -13.16729 -12.98256 -12.85299 -12.66621 -12.56641 -12.16710 -11.99485 -11.88393 -11.71504 -11.25524 -11.19918 -11.05911 -10.94598 -10.78952 -10.56187 -10.15716 -9.97553 -9.90516 -9.76129 -9.67508 -9.65261 -9.46733 -9.03491 -8.57817 -8.12871 -6.83261 -5.70934 -3.03825 0.82058 1.00795 2.78656 3.09759 3.42109 3.47081 3.49124 3.52300 4.03659 4.14984 4.38251 4.44744 4.51009 4.64890 4.69057 4.73258 4.85869 4.87884 4.93228 5.05393 5.11135 5.17843 5.18271 5.29445 5.30679 5.37435 5.41849 5.45649 5.49269 5.59506 5.61034 5.71632 5.77624 5.82078 5.92042 5.96481 5.97283 6.00935 6.09037 6.34877 6.46425 6.52977 6.58036 6.70630 7.42873 7.55402 7.62619 7.69328 7.73492 7.81380 8.23311 8.36285 9.20580 9.81409 10.46335 11.41220 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016576 B = 0.002444 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.775423 B =11453.682205 C =12325.373201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.138 4.138 3 C 0.089 3.911 4 N -0.480 5.480 5 C 0.096 3.904 6 C -0.124 4.124 7 C -0.062 4.062 8 C -0.132 4.132 9 C 0.513 3.487 10 O -0.542 6.542 11 N -0.594 5.594 12 C 0.070 3.930 13 C 0.051 3.949 14 O -0.360 6.360 15 C 0.065 3.935 16 H 0.071 0.929 17 C 0.142 3.858 18 N -0.598 5.598 19 C -0.225 4.225 20 H 0.080 0.920 21 C -0.008 4.008 22 N -0.920 5.920 23 Si 0.912 3.088 24 H -0.289 1.289 25 H -0.292 1.292 26 H -0.281 1.281 27 C 0.182 3.818 28 C 0.084 3.916 29 H 0.101 0.899 30 C -0.075 4.075 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.152 0.848 35 H 0.157 0.843 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.047 0.953 43 H 0.100 0.900 44 H 0.055 0.945 45 H 0.037 0.963 46 H 0.252 0.748 47 H 0.050 0.950 48 H 0.049 0.951 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.802 8.270 -4.511 23.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.140 4.140 3 C -0.068 4.068 4 N -0.187 5.187 5 C -0.061 4.061 6 C -0.126 4.126 7 C -0.100 4.100 8 C -0.172 4.172 9 C 0.301 3.699 10 O -0.419 6.419 11 N -0.327 5.327 12 C -0.053 4.053 13 C -0.027 4.027 14 O -0.278 6.278 15 C 0.006 3.994 16 H 0.089 0.911 17 C 0.015 3.985 18 N -0.325 5.325 19 C -0.353 4.353 20 H 0.098 0.902 21 C -0.204 4.204 22 N -0.568 5.568 23 Si 0.742 3.258 24 H -0.216 1.216 25 H -0.218 1.218 26 H -0.206 1.206 27 C 0.056 3.944 28 C -0.020 4.020 29 H 0.119 0.881 30 C -0.101 4.101 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.169 0.831 35 H 0.174 0.826 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.114 0.886 39 H 0.109 0.891 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.065 0.935 43 H 0.118 0.882 44 H 0.073 0.927 45 H 0.054 0.946 46 H 0.062 0.938 47 H 0.069 0.931 48 H 0.067 0.933 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -20.875 8.868 -4.864 23.196 hybrid contribution 0.358 -0.657 0.215 0.779 sum -20.517 8.211 -4.649 22.583 Atomic orbital electron populations 1.20722 0.90247 1.03148 1.02604 1.20941 0.97552 0.94180 1.01296 1.22659 0.90038 0.97414 0.96679 1.67693 1.08308 1.31307 1.11374 1.22751 1.00509 0.87078 0.95718 1.20967 0.94498 0.96822 1.00353 1.20289 1.00513 0.93307 0.95880 1.21661 1.00811 0.96154 0.98612 1.20561 0.80124 0.85856 0.83375 1.90692 1.56076 1.64275 1.30896 1.47640 1.53432 1.25911 1.05684 1.22627 1.01135 0.96327 0.85191 1.22915 0.91402 0.88129 1.00210 1.87906 1.62083 1.47108 1.30722 1.23823 0.97060 0.93382 0.85145 0.91142 1.21692 0.85292 0.91936 0.99555 1.44340 1.11907 1.17836 1.58398 1.19050 0.86760 1.08893 1.20605 0.90222 1.24823 0.98245 0.96976 1.00352 1.69962 1.31540 1.10915 1.44349 0.86094 0.84416 0.76980 0.78260 1.21632 1.21845 1.20616 1.21226 0.86730 0.91346 0.95091 1.22696 0.94711 0.84078 1.00510 0.88068 1.21430 0.93449 0.98248 0.96994 0.90916 0.91286 0.91162 0.83051 0.82621 0.89460 0.89905 0.88610 0.89093 0.89561 0.89378 0.93453 0.88185 0.92693 0.94577 0.93777 0.93144 0.93265 0.84880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.55 10.04 36.00 0.36 -0.19 16 2 C -0.14 -1.08 5.90 -104.48 -0.62 -1.70 16 3 C 0.09 0.81 10.86 -17.55 -0.19 0.62 16 4 N -0.48 -5.39 10.36 -13.26 -0.14 -5.53 16 5 C 0.10 1.01 10.86 -17.55 -0.19 0.82 16 6 C -0.12 -1.19 5.15 -104.48 -0.54 -1.73 16 7 C -0.06 -0.63 4.66 -27.88 -0.13 -0.76 16 8 C -0.13 -1.42 4.02 -27.88 -0.11 -1.53 16 9 C 0.51 7.99 7.68 -10.99 -0.08 7.91 16 10 O -0.54 -10.38 15.39 5.55 0.09 -10.29 16 11 N -0.59 -9.73 2.72 -164.40 -0.45 -10.18 16 12 C 0.07 0.94 6.30 -3.23 -0.02 0.92 16 13 C 0.05 0.67 7.04 37.68 0.27 0.94 16 14 O -0.36 -6.47 10.09 -35.23 -0.36 -6.83 16 15 C 0.07 1.18 4.13 -24.64 -0.10 1.07 16 16 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 17 C 0.14 2.95 6.81 -2.23 -0.02 2.94 16 18 N -0.60 -15.41 3.40 -170.01 -0.58 -15.98 16 19 C -0.22 -6.31 10.27 -15.06 -0.15 -6.46 16 20 H 0.08 2.15 7.84 -52.49 -0.41 1.74 16 21 C -0.01 -0.22 5.48 -17.43 -0.10 -0.31 16 22 N -0.92 -27.34 10.37 55.49 0.58 -26.77 16 23 Si 0.91 22.33 29.56 -169.99 -5.02 17.31 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 C 0.18 4.50 5.00 -3.34 -0.02 4.48 16 28 C 0.08 1.66 3.09 -67.26 -0.21 1.45 16 29 H 0.10 2.08 7.06 -51.92 -0.37 1.71 16 30 C -0.08 -0.63 9.55 -39.27 -0.37 -1.01 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.30 8.10 -51.93 -0.42 -0.12 16 33 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 34 H 0.15 1.00 8.06 -52.48 -0.42 0.57 16 35 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16 36 H 0.09 0.99 8.05 -51.93 -0.42 0.57 16 37 H 0.08 0.87 8.05 -51.93 -0.42 0.45 16 38 H 0.10 0.96 7.99 -51.93 -0.41 0.54 16 39 H 0.09 0.78 7.61 -51.93 -0.40 0.38 16 40 H 0.09 1.35 7.55 -51.93 -0.39 0.96 16 41 H 0.09 0.84 5.95 -51.93 -0.31 0.53 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 47 H 0.05 1.43 7.38 -51.92 -0.38 1.05 16 48 H 0.05 1.34 6.64 -51.93 -0.34 1.00 16 49 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 391.67 15.07 5.90 5.90 Total: -1.00 -34.81 391.67 -9.84 -44.65 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -7.63 Total: 0.28 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: -2.22 Total: 7.45 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: -0.59 Total: -58.46 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.27 Total: -17.12 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.81 -9.84 -44.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083138919.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.401 kcal (2) G-P(sol) polarization free energy of solvation -34.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds