Wall clock time and date at job start Wed Apr 1 2020 03:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38610 * 119.54878 * 2 1 4 4 C 1.38580 * 119.34901 * 179.72904 * 3 2 1 5 5 C 1.38636 * 118.48840 * 0.53486 * 4 3 2 6 6 C 1.39264 * 119.06336 * 359.49262 * 5 4 3 7 7 C 1.48165 * 119.72493 * 180.27059 * 6 5 4 8 8 O 1.21512 * 119.99915 * 338.57576 * 7 6 5 9 9 N 1.34784 * 119.99868 * 158.56744 * 7 6 5 10 10 C 1.46921 * 120.62800 * 359.97438 * 9 7 6 11 11 C 1.52771 * 109.00513 * 233.57814 * 10 9 7 12 12 C 1.53037 * 109.38218 * 305.58983 * 11 10 9 13 13 O 1.42904 * 109.45735 * 181.25831 * 12 11 10 14 14 C 1.42894 * 113.99800 * 89.93470 * 13 12 11 15 15 C 1.53946 * 113.74265 * 248.74120 * 14 13 12 16 16 N 1.47816 * 86.03727 * 222.08559 * 15 14 13 17 17 C 1.36936 * 134.45894 * 204.64129 * 16 15 14 18 18 H 1.07997 * 120.00135 * 179.86127 * 17 16 15 19 19 C 1.38817 * 119.99430 * 359.86778 * 17 16 15 20 20 N 1.31611 * 120.00353 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99532 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47201 * 60.00011 * 21 19 17 23 23 H 1.48499 * 109.46652 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46932 * 299.99640 * 21 19 17 25 25 C 1.47583 * 91.05063 * 24.54761 * 16 15 14 26 26 C 1.53043 * 109.53674 * 61.24204 * 12 11 10 27 27 C 1.46923 * 120.62816 * 180.27242 * 9 7 6 28 28 N 1.31495 * 119.54941 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47202 * 269.97464 * 1 2 3 30 30 H 1.09003 * 109.47206 * 29.97646 * 1 2 3 31 31 H 1.09001 * 109.47094 * 149.97816 * 1 2 3 32 32 H 1.07995 * 120.32352 * 359.97438 * 3 2 1 33 33 H 1.08001 * 120.75680 * 180.27650 * 4 3 2 34 34 H 1.08007 * 120.46617 * 179.75906 * 5 4 3 35 35 H 1.08999 * 109.59295 * 353.41198 * 10 9 7 36 36 H 1.09005 * 109.58848 * 113.84451 * 10 9 7 37 37 H 1.08994 * 109.56536 * 185.55495 * 11 10 9 38 38 H 1.08999 * 109.35409 * 65.49992 * 11 10 9 39 39 H 1.08998 * 109.44945 * 301.22540 * 12 11 10 40 40 H 1.09005 * 112.94665 * 20.33197 * 14 13 12 41 41 H 1.09001 * 113.76404 * 336.34447 * 15 14 13 42 42 H 1.08994 * 113.77299 * 107.74855 * 15 14 13 43 43 H 0.97000 * 120.00417 * 180.02562 * 20 19 17 44 44 H 1.09003 * 113.76741 * 221.15654 * 25 16 15 45 45 H 1.08996 * 113.76932 * 89.75973 * 25 16 15 46 46 H 1.09005 * 109.49298 * 178.68320 * 26 12 11 47 47 H 1.08992 * 109.52647 * 58.60053 * 26 12 11 48 48 H 1.09003 * 109.58858 * 246.16016 * 27 9 7 49 49 H 1.09000 * 109.58909 * 6.43841 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1905 1.2058 0.0000 4 6 3.5763 1.2010 0.0057 5 6 4.2333 -0.0198 -0.0001 6 6 3.4821 -1.1924 -0.0007 7 6 4.1692 -2.5051 -0.0008 8 8 5.3190 -2.5890 -0.3848 9 7 3.5189 -3.6061 0.4253 10 6 2.1289 -3.5204 0.8932 11 6 2.0341 -4.1387 2.2870 12 6 2.5992 -5.5605 2.2513 13 8 2.4844 -6.1510 3.5476 14 6 1.2571 -6.8510 3.7607 15 6 0.3250 -6.1715 4.7803 16 7 0.0728 -7.5314 5.3018 17 6 -0.9530 -8.1185 5.9934 18 1 -0.8946 -9.1626 6.2630 19 6 -2.0681 -7.3714 6.3477 20 7 -2.1391 -6.0988 6.0195 21 14 -3.4678 -8.1724 7.2905 22 1 -2.9587 -8.6931 8.5847 23 1 -4.5313 -7.1678 7.5456 24 1 -4.0257 -9.2926 6.4911 25 6 1.3687 -8.0028 4.7761 26 6 4.0726 -5.5155 1.8402 27 6 4.1889 -4.9137 0.4366 28 7 2.1554 -1.1439 -0.0005 29 1 -0.3634 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6485 2.1399 -0.0004 33 1 4.1318 2.1272 0.0103 34 1 5.3126 -0.0608 0.0002 35 1 1.8217 -2.4755 0.9369 36 1 1.4787 -4.0662 0.2094 37 1 0.9912 -4.1696 2.6024 38 1 2.6096 -3.5360 2.9895 39 1 2.0390 -6.1557 1.5302 40 1 0.7610 -7.1316 2.8316 41 1 0.8438 -5.5205 5.4839 42 1 -0.5504 -5.7028 4.3310 43 1 -2.9180 -5.5767 6.2674 44 1 1.3250 -8.9934 4.3233 45 1 2.1947 -7.8908 5.4785 46 1 4.4807 -6.5263 1.8377 47 1 4.6294 -4.9001 2.5468 48 1 3.7105 -5.5757 -0.2853 49 1 5.2399 -4.7881 0.1766 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093505017.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:45 Heat of formation + Delta-G solvation = 29.969427 kcal Electronic energy + Delta-G solvation = -30283.273456 eV Core-core repulsion = 26213.037726 eV Total energy + Delta-G solvation = -4070.235730 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.22500 -39.67043 -38.62649 -37.29395 -35.42889 -33.40817 -33.26896 -32.11652 -31.28461 -31.01882 -28.15028 -27.44974 -25.80691 -24.77304 -23.98696 -23.47545 -22.81358 -22.38495 -21.09025 -19.78925 -19.18762 -17.83759 -16.98654 -16.80832 -16.48183 -16.27910 -15.99689 -15.61224 -14.99033 -14.76346 -14.60993 -14.46856 -14.29910 -13.94397 -13.85618 -13.69425 -13.38932 -13.16355 -12.82864 -12.67544 -12.59530 -12.35845 -12.19437 -11.91090 -11.86083 -11.66264 -11.23020 -11.19862 -11.06211 -10.86513 -10.62500 -10.49900 -10.44255 -10.31404 -10.25363 -9.98006 -9.53143 -9.37722 -9.30506 -8.79737 -8.77422 -8.62148 -6.88600 -5.76722 -3.09402 0.32791 0.78658 2.45666 2.73490 3.39751 3.40447 3.43430 3.44871 3.68529 4.03638 4.22420 4.33255 4.49184 4.58791 4.66130 4.77425 4.93719 4.94698 5.08831 5.16479 5.22133 5.22728 5.25503 5.29667 5.31033 5.47136 5.50476 5.56329 5.62983 5.64936 5.67913 5.70340 5.73636 5.78712 5.88032 5.96987 6.03336 6.17352 6.30203 6.34747 6.44049 6.56374 6.66288 6.68227 7.14432 7.17524 7.24742 7.37355 7.53528 7.91741 7.92534 7.99444 9.04376 9.70284 10.59797 11.40446 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013469 B = 0.002473 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.306983 B =11321.343174 C =13057.942982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.124 3.876 3 C -0.151 4.151 4 C -0.076 4.076 5 C -0.120 4.120 6 C 0.088 3.912 7 C 0.572 3.428 8 O -0.540 6.540 9 N -0.588 5.588 10 C 0.077 3.923 11 C -0.158 4.158 12 C 0.092 3.908 13 O -0.374 6.374 14 C 0.035 3.965 15 C 0.151 3.849 16 N -0.609 5.609 17 C -0.222 4.222 18 H 0.081 0.919 19 C -0.008 4.008 20 N -0.921 5.921 21 Si 0.914 3.086 22 H -0.285 1.285 23 H -0.289 1.289 24 H -0.284 1.284 25 C 0.120 3.880 26 C -0.130 4.130 27 C 0.112 3.888 28 N -0.449 5.449 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.147 0.853 35 H 0.143 0.857 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.058 0.942 40 H 0.080 0.920 41 H 0.033 0.967 42 H 0.072 0.928 43 H 0.254 0.746 44 H 0.045 0.955 45 H 0.042 0.958 46 H 0.082 0.918 47 H 0.073 0.927 48 H 0.071 0.929 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.109 15.030 -16.128 24.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.015 4.015 3 C -0.171 4.171 4 C -0.101 4.101 5 C -0.141 4.141 6 C -0.049 4.049 7 C 0.358 3.642 8 O -0.417 6.417 9 N -0.319 5.319 10 C -0.045 4.045 11 C -0.196 4.196 12 C 0.033 3.967 13 O -0.292 6.292 14 C -0.024 4.024 15 C 0.025 3.975 16 N -0.338 5.338 17 C -0.349 4.349 18 H 0.098 0.902 19 C -0.205 4.205 20 N -0.568 5.568 21 Si 0.744 3.256 22 H -0.212 1.212 23 H -0.215 1.215 24 H -0.210 1.210 25 C -0.006 4.006 26 C -0.169 4.169 27 C -0.010 4.010 28 N -0.163 5.163 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.158 0.842 33 H 0.161 0.839 34 H 0.164 0.836 35 H 0.160 0.840 36 H 0.086 0.914 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.098 0.902 41 H 0.051 0.949 42 H 0.090 0.910 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.060 0.940 46 H 0.101 0.899 47 H 0.092 0.908 48 H 0.090 0.910 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 10.105 14.182 -16.042 23.677 hybrid contribution -0.552 0.347 0.629 0.906 sum 9.553 14.529 -15.413 23.236 Atomic orbital electron populations 1.20800 0.87927 1.03961 1.03884 1.21531 0.97492 0.88097 0.94348 1.22197 0.95003 0.99497 1.00354 1.21637 0.94467 0.98299 0.95742 1.22058 1.02151 0.91711 0.98151 1.21115 0.89701 0.94156 0.99949 1.17898 0.85266 0.83033 0.77958 1.90770 1.16846 1.85454 1.48637 1.48027 1.14671 1.07250 1.61927 1.22837 0.80461 1.06929 0.94237 1.22442 1.03053 0.97048 0.97090 1.22034 0.95379 0.93205 0.86064 1.87938 1.39246 1.70386 1.31582 1.25050 0.84574 0.94753 0.97999 1.22739 0.94755 0.88705 0.91270 1.45699 1.14661 1.07417 1.65997 1.18947 0.93779 0.93983 1.28190 0.90166 1.24801 0.98495 0.95883 1.01295 1.69814 1.29829 1.06317 1.50817 0.86174 0.81657 0.78017 0.79760 1.21151 1.21527 1.21046 1.22739 0.89645 0.95130 0.93082 1.21980 0.96668 1.02141 0.96064 1.21675 0.99491 0.82905 0.96921 1.67432 1.08343 1.28571 1.11915 0.89658 0.90397 0.89960 0.84165 0.83940 0.83558 0.84032 0.91390 0.89697 0.91240 0.92364 0.90232 0.94947 0.90981 0.93592 0.93635 0.94050 0.89915 0.90796 0.91025 0.88559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 10.17 36.00 0.37 -0.30 16 2 C 0.12 1.05 6.78 -82.60 -0.56 0.49 16 3 C -0.15 -1.00 9.75 -39.32 -0.38 -1.38 16 4 C -0.08 -0.52 10.17 -39.31 -0.40 -0.92 16 5 C -0.12 -1.12 9.63 -39.05 -0.38 -1.50 16 6 C 0.09 1.02 6.46 -83.01 -0.54 0.48 16 7 C 0.57 7.65 7.62 -12.18 -0.09 7.56 16 8 O -0.54 -8.34 15.94 5.36 0.09 -8.25 16 9 N -0.59 -7.32 2.98 -174.04 -0.52 -7.83 16 10 C 0.08 0.92 5.96 -3.93 -0.02 0.90 16 11 C -0.16 -2.15 5.68 -26.83 -0.15 -2.30 16 12 C 0.09 1.30 2.57 -26.69 -0.07 1.23 16 13 O -0.37 -6.69 10.01 -35.23 -0.35 -7.04 16 14 C 0.03 0.69 4.44 -25.80 -0.11 0.57 16 15 C 0.15 3.67 7.36 -2.84 -0.02 3.65 16 16 N -0.61 -16.18 3.70 -177.95 -0.66 -16.84 16 17 C -0.22 -6.33 10.70 -15.06 -0.16 -6.49 16 18 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 19 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 20 N -0.92 -27.40 11.39 55.49 0.63 -26.77 16 21 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 C 0.12 2.61 8.77 -2.96 -0.03 2.58 16 26 C -0.13 -1.59 5.73 -26.63 -0.15 -1.74 16 27 C 0.11 1.27 6.43 -3.73 -0.02 1.25 16 28 N -0.45 -4.80 6.27 -6.06 -0.04 -4.84 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.31 8.08 -51.93 -0.42 -0.11 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 33 H 0.14 0.55 8.06 -52.49 -0.42 0.12 16 34 H 0.15 1.28 7.79 -52.48 -0.41 0.87 16 35 H 0.14 1.68 3.97 -79.61 -0.32 1.36 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.06 0.79 7.43 -51.93 -0.39 0.40 16 40 H 0.08 1.50 7.47 -51.93 -0.39 1.11 16 41 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.07 1.88 7.17 -51.93 -0.37 1.51 16 43 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 47 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 48 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.10 1.12 7.00 -51.93 -0.36 0.75 16 LS Contribution 395.59 15.07 5.96 5.96 Total: -1.00 -34.12 395.59 -10.43 -44.55 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -7.70 Total: 0.14 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: -2.82 Total: 3.75 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: -0.58 Total: -56.28 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.27 Total: -15.29 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.12 -10.43 -44.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093505017.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.521 kcal (2) G-P(sol) polarization free energy of solvation -34.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds