Wall clock time and date at job start Wed Apr 1 2020 03:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38610 * 119.54878 * 2 1 4 4 C 1.38580 * 119.34901 * 179.72904 * 3 2 1 5 5 C 1.38636 * 118.48840 * 0.53486 * 4 3 2 6 6 C 1.39264 * 119.06336 * 359.49262 * 5 4 3 7 7 C 1.48165 * 119.72493 * 180.27059 * 6 5 4 8 8 O 1.21512 * 119.99915 * 338.57576 * 7 6 5 9 9 N 1.34784 * 119.99868 * 158.56744 * 7 6 5 10 10 C 1.46921 * 120.62800 * 359.97438 * 9 7 6 11 11 C 1.52771 * 109.00513 * 233.57814 * 10 9 7 12 12 C 1.53037 * 109.38218 * 305.58983 * 11 10 9 13 13 O 1.42904 * 109.45735 * 181.25831 * 12 11 10 14 14 C 1.42894 * 113.99800 * 89.93470 * 13 12 11 15 15 C 1.53946 * 113.74265 * 248.74120 * 14 13 12 16 16 N 1.47816 * 86.03727 * 222.08559 * 15 14 13 17 17 C 1.36936 * 134.45894 * 204.64129 * 16 15 14 18 18 H 1.07997 * 120.00135 * 179.86127 * 17 16 15 19 19 C 1.38817 * 119.99430 * 359.86778 * 17 16 15 20 20 N 1.31611 * 120.00353 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99532 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47201 * 60.00011 * 21 19 17 23 23 H 1.48499 * 109.46652 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46932 * 299.99640 * 21 19 17 25 25 C 1.47583 * 91.05063 * 24.54761 * 16 15 14 26 26 C 1.53043 * 109.53674 * 61.24204 * 12 11 10 27 27 C 1.46923 * 120.62816 * 180.27242 * 9 7 6 28 28 N 1.31495 * 119.54941 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47202 * 269.97464 * 1 2 3 30 30 H 1.09003 * 109.47206 * 29.97646 * 1 2 3 31 31 H 1.09001 * 109.47094 * 149.97816 * 1 2 3 32 32 H 1.07995 * 120.32352 * 359.97438 * 3 2 1 33 33 H 1.08001 * 120.75680 * 180.27650 * 4 3 2 34 34 H 1.08007 * 120.46617 * 179.75906 * 5 4 3 35 35 H 1.08999 * 109.59295 * 353.41198 * 10 9 7 36 36 H 1.09005 * 109.58848 * 113.84451 * 10 9 7 37 37 H 1.08994 * 109.56536 * 185.55495 * 11 10 9 38 38 H 1.08999 * 109.35409 * 65.49992 * 11 10 9 39 39 H 1.08998 * 109.44945 * 301.22540 * 12 11 10 40 40 H 1.09005 * 112.94665 * 20.33197 * 14 13 12 41 41 H 1.09001 * 113.76404 * 336.34447 * 15 14 13 42 42 H 1.08994 * 113.77299 * 107.74855 * 15 14 13 43 43 H 0.97000 * 120.00417 * 180.02562 * 20 19 17 44 44 H 1.09003 * 113.76741 * 221.15654 * 25 16 15 45 45 H 1.08996 * 113.76932 * 89.75973 * 25 16 15 46 46 H 1.09005 * 109.49298 * 178.68320 * 26 12 11 47 47 H 1.08992 * 109.52647 * 58.60053 * 26 12 11 48 48 H 1.09003 * 109.58858 * 246.16016 * 27 9 7 49 49 H 1.09000 * 109.58909 * 6.43841 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1905 1.2058 0.0000 4 6 3.5763 1.2010 0.0057 5 6 4.2333 -0.0198 -0.0001 6 6 3.4821 -1.1924 -0.0007 7 6 4.1692 -2.5051 -0.0008 8 8 5.3190 -2.5890 -0.3848 9 7 3.5189 -3.6061 0.4253 10 6 2.1289 -3.5204 0.8932 11 6 2.0341 -4.1387 2.2870 12 6 2.5992 -5.5605 2.2513 13 8 2.4844 -6.1510 3.5476 14 6 1.2571 -6.8510 3.7607 15 6 0.3250 -6.1715 4.7803 16 7 0.0728 -7.5314 5.3018 17 6 -0.9530 -8.1185 5.9934 18 1 -0.8946 -9.1626 6.2630 19 6 -2.0681 -7.3714 6.3477 20 7 -2.1391 -6.0988 6.0195 21 14 -3.4678 -8.1724 7.2905 22 1 -2.9587 -8.6931 8.5847 23 1 -4.5313 -7.1678 7.5456 24 1 -4.0257 -9.2926 6.4911 25 6 1.3687 -8.0028 4.7761 26 6 4.0726 -5.5155 1.8402 27 6 4.1889 -4.9137 0.4366 28 7 2.1554 -1.1439 -0.0005 29 1 -0.3634 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6485 2.1399 -0.0004 33 1 4.1318 2.1272 0.0103 34 1 5.3126 -0.0608 0.0002 35 1 1.8217 -2.4755 0.9369 36 1 1.4787 -4.0662 0.2094 37 1 0.9912 -4.1696 2.6024 38 1 2.6096 -3.5360 2.9895 39 1 2.0390 -6.1557 1.5302 40 1 0.7610 -7.1316 2.8316 41 1 0.8438 -5.5205 5.4839 42 1 -0.5504 -5.7028 4.3310 43 1 -2.9180 -5.5767 6.2674 44 1 1.3250 -8.9934 4.3233 45 1 2.1947 -7.8908 5.4785 46 1 4.4807 -6.5263 1.8377 47 1 4.6294 -4.9001 2.5468 48 1 3.7105 -5.5757 -0.2853 49 1 5.2399 -4.7881 0.1766 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093505017.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:44 Heat of formation + Delta-G solvation = 9.169225 kcal Electronic energy + Delta-G solvation = -30284.175420 eV Core-core repulsion = 26213.037726 eV Total energy + Delta-G solvation = -4071.137694 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.02859 -40.65929 -40.04212 -38.64253 -36.84103 -34.26657 -34.01047 -33.88301 -32.46757 -32.00851 -29.45697 -28.72528 -26.76535 -26.60367 -25.13501 -24.67574 -24.19989 -23.12183 -22.10798 -21.29831 -20.43650 -18.83494 -18.71931 -17.93638 -17.64434 -17.05279 -17.01081 -16.89429 -16.49098 -15.98372 -15.80762 -15.51695 -15.34084 -15.24746 -14.96914 -14.72231 -14.55403 -14.28331 -14.15817 -13.52589 -13.49735 -13.29315 -13.20914 -13.13424 -13.08536 -12.88360 -12.84697 -12.81803 -12.69869 -12.25615 -12.24141 -11.94198 -11.83347 -11.54145 -11.45712 -11.41282 -10.91686 -10.86901 -10.42636 -10.07429 -9.90673 -9.74146 -8.97855 -7.92114 -5.27663 -0.37247 0.18244 1.45724 1.49920 1.55925 1.57411 1.83070 2.41927 2.67183 2.73211 2.95083 3.26986 3.44557 3.50318 3.76353 3.78062 3.84797 3.97701 4.00400 4.04598 4.09319 4.10542 4.16787 4.30141 4.35065 4.37131 4.55695 4.57932 4.66942 4.74781 4.77631 4.83736 4.84248 4.84787 4.91408 4.94058 5.08258 5.12441 5.14007 5.15921 5.18925 5.21989 5.23473 5.35120 5.47710 5.49193 5.74215 5.88018 6.20861 6.44939 6.65254 6.88641 6.98003 7.57080 8.52249 9.24727 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013469 B = 0.002473 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.306983 B =11321.343174 C =13057.942982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.109 3.891 3 C -0.139 4.139 4 C -0.070 4.070 5 C -0.129 4.129 6 C 0.057 3.943 7 C 0.566 3.434 8 O -0.570 6.570 9 N -0.590 5.590 10 C 0.086 3.914 11 C -0.151 4.151 12 C 0.085 3.915 13 O -0.382 6.382 14 C 0.069 3.931 15 C 0.149 3.851 16 N -0.639 5.639 17 C -0.240 4.240 18 H 0.087 0.913 19 C -0.067 4.067 20 N -0.952 5.952 21 Si 0.984 3.016 22 H -0.279 1.279 23 H -0.292 1.292 24 H -0.272 1.272 25 C 0.119 3.881 26 C -0.120 4.120 27 C 0.113 3.887 28 N -0.468 5.468 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.073 0.927 32 H 0.177 0.823 33 H 0.178 0.822 34 H 0.145 0.855 35 H 0.147 0.853 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.053 0.947 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.009 0.991 42 H 0.047 0.953 43 H 0.250 0.750 44 H 0.068 0.932 45 H 0.043 0.957 46 H 0.098 0.902 47 H 0.059 0.941 48 H 0.091 0.909 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.771 15.596 -17.173 25.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.030 4.030 3 C -0.158 4.158 4 C -0.096 4.096 5 C -0.150 4.150 6 C -0.079 4.079 7 C 0.354 3.646 8 O -0.450 6.450 9 N -0.321 5.321 10 C -0.036 4.036 11 C -0.190 4.190 12 C 0.027 3.973 13 O -0.300 6.300 14 C 0.011 3.989 15 C 0.023 3.977 16 N -0.367 5.367 17 C -0.368 4.368 18 H 0.105 0.895 19 C -0.260 4.260 20 N -0.601 5.601 21 Si 0.811 3.189 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.198 1.198 25 C -0.006 4.006 26 C -0.158 4.158 27 C -0.009 4.009 28 N -0.182 5.182 29 H 0.104 0.896 30 H 0.122 0.878 31 H 0.092 0.908 32 H 0.194 0.806 33 H 0.195 0.805 34 H 0.163 0.837 35 H 0.163 0.837 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.115 0.885 41 H 0.027 0.973 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.086 0.914 45 H 0.061 0.939 46 H 0.116 0.884 47 H 0.078 0.922 48 H 0.109 0.891 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 9.796 14.723 -17.097 24.597 hybrid contribution -0.402 0.278 0.937 1.057 sum 9.394 15.000 -16.160 23.967 Atomic orbital electron populations 1.20868 0.86485 1.04863 1.04158 1.22028 0.98574 0.88275 0.94147 1.22625 0.95083 1.00188 0.97928 1.22047 0.94862 0.98477 0.94171 1.22213 1.02245 0.92246 0.98267 1.20974 0.90400 0.93796 1.02746 1.18284 0.85048 0.83906 0.77323 1.90733 1.18072 1.86052 1.50123 1.48129 1.14767 1.07576 1.61591 1.22799 0.80470 1.07258 0.93090 1.22352 1.01835 0.96854 0.97938 1.22312 0.97074 0.93194 0.84685 1.87924 1.37761 1.70369 1.33968 1.24466 0.84355 0.92790 0.97330 1.22632 0.94795 0.88077 0.92188 1.46084 1.16049 1.08489 1.66118 1.19387 0.94637 0.94577 1.28156 0.89518 1.25712 1.01145 0.96532 1.02585 1.70012 1.30337 1.07683 1.52028 0.85078 0.78178 0.77136 0.78471 1.20474 1.21827 1.19788 1.22873 0.87572 0.96808 0.93299 1.21901 0.94910 1.02869 0.96146 1.21733 0.99632 0.82801 0.96688 1.67271 1.08024 1.30121 1.12808 0.89597 0.87773 0.90832 0.80586 0.80509 0.83696 0.83713 0.90423 0.90996 0.92790 0.90794 0.88498 0.97296 0.93454 0.94100 0.91358 0.93907 0.88359 0.92188 0.89086 0.88800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 10.17 71.23 0.72 -0.41 16 2 C 0.11 1.68 6.78 42.70 0.29 1.97 16 3 C -0.14 -1.44 9.75 22.44 0.22 -1.23 16 4 C -0.07 -0.79 10.17 22.45 0.23 -0.56 16 5 C -0.13 -2.35 9.63 22.61 0.22 -2.13 16 6 C 0.06 1.32 6.46 41.89 0.27 1.59 16 7 C 0.57 15.50 7.62 86.88 0.66 16.17 16 8 O -0.57 -18.13 15.94 -3.75 -0.06 -18.19 16 9 N -0.59 -14.71 2.98 -822.84 -2.45 -17.16 16 10 C 0.09 2.04 5.96 86.22 0.51 2.55 16 11 C -0.15 -4.18 5.68 30.53 0.17 -4.01 16 12 C 0.09 2.34 2.57 30.62 0.08 2.42 16 13 O -0.38 -13.45 10.01 -148.98 -1.49 -14.94 16 14 C 0.07 2.71 4.44 31.25 0.14 2.85 16 15 C 0.15 7.45 7.36 86.44 0.64 8.09 16 16 N -0.64 -34.18 3.70 -720.73 -2.67 -36.85 16 17 C -0.24 -13.74 10.70 84.03 0.90 -12.85 16 18 H 0.09 4.70 7.83 -2.91 -0.02 4.68 16 19 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 20 N -0.95 -57.96 11.39 21.65 0.25 -57.72 16 21 Si 0.98 45.81 29.55 68.60 2.03 47.84 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 23 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 24 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 25 C 0.12 5.08 8.77 86.49 0.76 5.84 16 26 C -0.12 -2.82 5.73 30.66 0.18 -2.64 16 27 C 0.11 2.49 6.43 86.35 0.56 3.04 16 28 N -0.47 -9.90 6.27 -173.08 -1.08 -10.99 16 29 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.10 0.53 8.08 -2.39 -0.02 0.51 16 31 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.18 0.54 8.06 -2.91 -0.02 0.51 16 33 H 0.18 0.71 8.06 -2.91 -0.02 0.68 16 34 H 0.15 2.57 7.79 -2.91 -0.02 2.54 16 35 H 0.15 3.49 3.97 -57.05 -0.23 3.26 16 36 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 37 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.07 1.85 7.43 -2.39 -0.02 1.83 16 40 H 0.10 3.49 7.47 -2.38 -0.02 3.47 16 41 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.05 2.58 7.17 -2.39 -0.02 2.56 16 43 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 44 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 45 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 47 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 48 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 49 H 0.09 2.15 7.00 -2.39 -0.02 2.14 16 Total: -1.00 -75.64 395.59 2.25 -73.38 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 0.73 Total: 17.30 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: 7.01 Total: 17.32 kcal Atomic # 7 Polarization: -116.75 SS G_CDS: -5.96 Total: -122.71 kcal Atomic # 8 Polarization: -31.58 SS G_CDS: -1.55 Total: -33.13 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -75.64 2.25 -73.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093505017.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.550 kcal (2) G-P(sol) polarization free energy of solvation -75.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds