Wall clock time and date at job start Wed Apr 1 2020 04:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34231 * 116.99434 * 2 1 4 4 O 1.20824 * 120.00156 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99865 * 180.27777 * 3 2 1 6 6 C 1.52837 * 110.36143 * 57.70014 * 5 3 2 7 7 C 1.57061 * 102.94023 * 270.68723 * 6 5 3 8 8 N 1.49179 * 106.99227 * 357.31829 * 7 6 5 9 9 C 1.46488 * 104.15782 * 334.17238 * 8 7 6 10 10 H 1.08999 * 110.01245 * 287.02679 * 9 8 7 11 11 C 1.51480 * 116.92245 * 160.09219 * 9 8 7 12 12 N 1.47704 * 107.11525 * 182.04117 * 11 9 8 13 13 C 1.38086 * 111.00282 * 184.70699 * 12 11 9 14 14 N 1.32273 * 119.90572 * 297.19710 * 13 12 11 15 15 C 1.31970 * 121.86898 * 179.97438 * 14 13 12 16 16 C 1.50694 * 119.27674 * 180.02562 * 15 14 13 17 17 C 1.38678 * 121.44686 * 0.02562 * 15 14 13 18 18 C 1.38015 * 119.62780 * 359.97438 * 17 15 14 19 19 C 1.41005 * 118.28050 * 359.74929 * 18 17 15 20 20 C 1.41018 * 120.70818 * 180.24414 * 19 18 17 21 21 H 1.08002 * 119.99992 * 204.69161 * 20 19 18 22 22 C 1.39946 * 119.99450 * 24.68984 * 20 19 18 23 23 N 1.30870 * 120.00644 * 16.48204 * 22 20 19 24 24 Si 1.86806 * 119.99504 * 196.47863 * 22 20 19 25 25 H 1.48495 * 109.47229 * 60.00513 * 24 22 20 26 26 H 1.48505 * 109.46859 * 180.02562 * 24 22 20 27 27 H 1.48494 * 109.47442 * 300.00034 * 24 22 20 28 28 C 1.46343 * 113.60550 * 58.78437 * 12 11 9 29 29 C 1.51781 * 110.33020 * 187.81280 * 5 3 2 30 30 H 1.09002 * 109.46617 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.46991 * 300.00125 * 1 2 3 32 32 H 1.08999 * 109.46839 * 60.00422 * 1 2 3 33 33 H 1.08997 * 110.54203 * 29.58985 * 6 5 3 34 34 H 1.09003 * 110.54102 * 152.38645 * 6 5 3 35 35 H 1.09004 * 109.90280 * 237.91851 * 7 6 5 36 36 H 1.08997 * 109.93558 * 116.73617 * 7 6 5 37 37 H 1.00900 * 110.99732 * 214.64917 * 8 7 6 38 38 H 1.08993 * 109.93160 * 62.63730 * 11 9 8 39 39 H 1.08999 * 109.92258 * 301.43211 * 11 9 8 40 40 H 1.09001 * 109.47229 * 89.99998 * 16 15 14 41 41 H 1.09001 * 109.47165 * 210.00546 * 16 15 14 42 42 H 1.09008 * 109.47261 * 329.99866 * 16 15 14 43 43 H 1.08000 * 120.18653 * 179.97438 * 17 15 14 44 44 H 1.08000 * 120.86043 * 180.02562 * 18 17 15 45 45 H 0.96994 * 120.00402 * 179.97438 * 23 22 20 46 46 H 1.09000 * 109.01231 * 183.77766 * 28 12 11 47 47 H 1.08997 * 109.00788 * 64.98378 * 28 12 11 48 48 H 1.08994 * 109.94826 * 176.64377 * 29 5 3 49 49 H 1.08997 * 109.94872 * 297.91005 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2751 -0.0063 6 6 4.1322 0.5410 -1.2216 7 6 4.3168 -0.9260 -0.6918 8 7 3.9270 -0.9218 0.7482 9 6 4.1582 0.4594 1.1779 10 1 5.2282 0.6503 1.2603 11 6 3.4424 0.9163 2.4323 12 7 3.7862 2.3384 2.6354 13 6 3.2577 2.8110 3.8204 14 7 1.9466 2.8408 3.9922 15 6 1.4001 3.2840 5.1087 16 6 -0.1010 3.2914 5.2421 17 6 2.1768 3.7431 6.1618 18 6 3.5522 3.7391 6.0476 19 6 4.1218 3.2571 4.8512 20 6 5.5214 3.2252 4.6817 21 1 5.9458 3.2472 3.6888 22 6 6.3604 3.1649 5.8001 23 7 5.8748 2.8170 6.9645 24 14 8.1736 3.5812 5.6309 25 1 8.3179 4.9783 5.1491 26 1 8.8388 3.4412 6.9513 27 1 8.8056 2.6543 4.6581 28 6 3.4092 3.1985 1.5130 29 6 4.0198 2.7104 0.1883 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 3.4269 0.5755 -2.0519 34 1 5.0909 0.9690 -1.5146 35 1 5.3586 -1.2295 -0.7950 36 1 3.6737 -1.6064 -1.2500 37 1 4.4950 -1.5655 1.2784 38 1 3.7770 0.3277 3.2864 39 1 2.3651 0.8093 2.3051 40 1 -0.4327 2.3436 5.6660 41 1 -0.4035 4.1083 5.8973 42 1 -0.5525 3.4278 4.2593 43 1 1.7080 4.1018 7.0663 44 1 4.1762 4.0917 6.8555 45 1 6.4564 2.7749 7.7396 46 1 3.7554 4.2129 1.7111 47 1 2.3231 3.2071 1.4216 48 1 5.1076 2.7526 0.2423 49 1 3.6630 3.3282 -0.6357 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158638998.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:29 Heat of formation + Delta-G solvation = -46.183614 kcal Electronic energy + Delta-G solvation = -32688.350093 eV Core-core repulsion = 28614.812120 eV Total energy + Delta-G solvation = -4073.537973 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.59320 -40.65115 -39.66378 -37.69589 -37.06238 -36.05885 -33.86832 -32.76988 -32.14989 -30.50031 -29.85910 -29.40503 -28.56979 -26.11297 -25.02153 -23.81247 -23.68740 -22.61299 -21.95351 -21.80402 -20.50347 -19.15295 -18.38993 -17.84990 -17.56750 -17.31807 -16.96509 -16.58434 -16.30392 -16.16102 -15.66527 -15.35212 -15.26027 -14.86641 -14.69230 -14.36934 -14.19431 -13.92013 -13.84380 -13.63336 -13.47981 -13.37851 -13.35293 -13.13843 -13.05770 -12.94251 -12.71274 -12.59703 -12.58300 -12.45677 -12.18824 -12.06399 -11.76637 -11.66328 -11.55766 -11.28436 -11.14901 -11.11032 -10.19887 -10.01591 -9.41174 -9.27437 -9.09952 -8.63152 -6.29428 0.74426 1.04344 1.21968 1.41729 1.52708 1.57461 1.84127 2.21800 2.71584 2.78014 3.20819 3.43743 3.54805 3.61738 3.75399 4.00075 4.05437 4.17660 4.19677 4.28957 4.31144 4.35265 4.38893 4.42071 4.54217 4.61435 4.64877 4.65906 4.68175 4.79261 4.88407 4.89208 4.91377 4.91485 4.94812 5.00134 5.04912 5.14710 5.17525 5.20314 5.29567 5.33172 5.55280 5.74836 5.77328 5.84531 6.14935 6.27021 6.41314 6.48504 6.71013 6.82291 6.85330 7.09042 7.75548 8.28497 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010900 B = 0.004748 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.208635 B = 5895.577392 C = 7613.787375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.331 6.331 3 C 0.479 3.521 4 O -0.539 6.539 5 C -0.062 4.062 6 C -0.106 4.106 7 C 0.049 3.951 8 N -0.661 5.661 9 C 0.092 3.908 10 H 0.076 0.924 11 C 0.096 3.904 12 N -0.462 5.462 13 C 0.149 3.851 14 N -0.502 5.502 15 C -0.026 4.026 16 C -0.065 4.065 17 C -0.147 4.147 18 C -0.160 4.160 19 C 0.063 3.937 20 C -0.437 4.437 21 H 0.089 0.911 22 C 0.034 3.966 23 N -0.819 5.819 24 Si 0.985 3.015 25 H -0.261 1.261 26 H -0.270 1.270 27 H -0.256 1.256 28 C 0.054 3.946 29 C -0.082 4.082 30 H 0.130 0.870 31 H 0.037 0.963 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.109 0.891 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.348 0.652 38 H 0.050 0.950 39 H 0.014 0.986 40 H 0.059 0.941 41 H 0.078 0.922 42 H 0.048 0.952 43 H 0.124 0.876 44 H 0.118 0.882 45 H 0.290 0.710 46 H 0.052 0.948 47 H 0.036 0.964 48 H 0.104 0.896 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.093 -6.611 -13.159 14.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.246 6.246 3 C 0.324 3.676 4 O -0.430 6.430 5 C -0.064 4.064 6 C -0.144 4.144 7 C -0.080 4.080 8 N -0.291 5.291 9 C -0.019 4.019 10 H 0.094 0.906 11 C -0.032 4.032 12 N -0.184 5.184 13 C -0.083 4.083 14 N -0.214 5.214 15 C -0.166 4.166 16 C -0.123 4.123 17 C -0.167 4.167 18 C -0.186 4.186 19 C 0.057 3.943 20 C -0.466 4.466 21 H 0.107 0.893 22 C -0.182 4.182 23 N -0.444 5.444 24 Si 0.806 3.194 25 H -0.185 1.185 26 H -0.195 1.195 27 H -0.180 1.180 28 C -0.073 4.073 29 C -0.120 4.120 30 H 0.148 0.852 31 H 0.056 0.944 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.128 0.872 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.165 0.835 38 H 0.069 0.931 39 H 0.032 0.968 40 H 0.078 0.922 41 H 0.097 0.903 42 H 0.067 0.933 43 H 0.142 0.858 44 H 0.136 0.864 45 H 0.101 0.899 46 H 0.070 0.930 47 H 0.054 0.946 48 H 0.122 0.878 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.875 -6.654 -13.631 15.193 hybrid contribution 0.705 0.781 1.437 1.781 sum -0.170 -5.873 -12.194 13.535 Atomic orbital electron populations 1.23400 0.76600 1.05060 1.01340 1.86657 1.23035 1.31879 1.83027 1.23650 0.92112 0.81174 0.70677 1.90603 1.67944 1.37506 1.46925 1.21316 0.86913 0.98194 1.00010 1.22667 1.02757 0.94563 0.94414 1.23434 1.00670 0.95990 0.87863 1.62897 1.58144 1.03754 1.04327 1.21980 0.98457 0.89703 0.91717 0.90640 1.21435 0.96218 0.88274 0.97236 1.58615 1.58547 1.01194 1.00074 1.19503 0.86660 1.07875 0.94293 1.66895 1.14955 1.14700 1.24873 1.20758 0.96832 1.08024 0.91016 1.20283 0.89029 1.01723 1.01228 1.21698 0.94442 1.01697 0.98899 1.21686 0.93840 1.03479 0.99604 1.18464 0.94931 0.89888 0.91055 1.19636 0.90490 1.41834 0.94654 0.89290 1.26893 1.06123 0.91384 0.93835 1.69865 1.40277 1.32517 1.01772 0.85195 0.75501 0.80013 0.78725 1.18538 1.19473 1.17985 1.22201 0.98961 0.95895 0.90243 1.21407 1.02114 0.92625 0.95869 0.85200 0.94440 0.91755 0.89776 0.87247 0.91078 0.89177 0.83511 0.93116 0.96759 0.92239 0.90331 0.93260 0.85816 0.86385 0.89878 0.92983 0.94610 0.87763 0.89436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 10.56 113.37 1.20 1.95 16 2 O -0.33 -10.15 8.95 -51.42 -0.46 -10.61 16 3 C 0.48 16.23 4.38 71.24 0.31 16.54 16 4 O -0.54 -21.72 13.58 21.97 0.30 -21.42 16 5 C -0.06 -1.77 0.71 -52.52 -0.04 -1.80 16 6 C -0.11 -2.00 6.23 31.97 0.20 -1.80 16 7 C 0.05 0.85 7.28 87.29 0.64 1.49 16 8 N -0.66 -16.16 6.33 -477.63 -3.03 -19.19 16 9 C 0.09 2.81 2.53 45.36 0.11 2.92 16 10 H 0.08 2.23 8.04 -2.39 -0.02 2.21 16 11 C 0.10 3.97 5.13 85.65 0.44 4.41 16 12 N -0.46 -20.84 3.70 -700.82 -2.59 -23.44 16 13 C 0.15 7.77 5.29 134.05 0.71 8.48 16 14 N -0.50 -26.24 9.63 -179.58 -1.73 -27.97 16 15 C -0.03 -1.27 6.79 42.64 0.29 -0.98 16 16 C -0.06 -2.47 10.15 71.23 0.72 -1.75 16 17 C -0.15 -7.10 9.69 22.32 0.22 -6.88 16 18 C -0.16 -8.49 8.79 22.90 0.20 -8.28 16 19 C 0.06 3.42 5.60 -21.06 -0.12 3.30 16 20 C -0.44 -22.77 8.71 23.37 0.20 -22.57 16 21 H 0.09 4.52 7.60 -2.91 -0.02 4.50 16 22 C 0.03 1.62 5.19 85.25 0.44 2.06 16 23 N -0.82 -41.21 10.93 21.83 0.24 -40.97 16 24 Si 0.99 36.50 29.59 68.60 2.03 38.53 16 25 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 26 H -0.27 -9.53 7.11 99.48 0.71 -8.82 16 27 H -0.26 -9.10 7.11 99.48 0.71 -8.39 16 28 C 0.05 2.25 4.98 86.68 0.43 2.68 16 29 C -0.08 -2.49 5.00 30.47 0.15 -2.34 16 30 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.04 1.12 8.13 -2.39 -0.02 1.10 16 32 H 0.06 1.50 8.13 -2.39 -0.02 1.48 16 33 H 0.08 1.47 7.91 -2.39 -0.02 1.45 16 34 H 0.11 1.54 8.07 -2.39 -0.02 1.52 16 35 H 0.07 0.92 8.14 -2.38 -0.02 0.91 16 36 H 0.09 1.45 8.14 -2.39 -0.02 1.44 16 37 H 0.35 7.47 8.91 -89.69 -0.80 6.67 16 38 H 0.05 2.28 8.13 -2.39 -0.02 2.26 16 39 H 0.01 0.66 6.52 -2.39 -0.02 0.64 16 40 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.08 2.53 8.07 -2.39 -0.02 2.51 16 42 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 43 H 0.12 5.11 8.06 -2.91 -0.02 5.09 16 44 H 0.12 6.36 6.23 -2.91 -0.02 6.34 16 45 H 0.29 13.21 8.30 -92.71 -0.77 12.44 16 46 H 0.05 2.26 8.13 -2.39 -0.02 2.24 16 47 H 0.04 1.70 5.27 -2.39 -0.01 1.69 16 48 H 0.10 2.75 8.07 -2.39 -0.02 2.73 16 49 H 0.09 2.43 8.10 -2.39 -0.02 2.41 16 Total: -1.00 -68.81 383.43 1.04 -67.77 By element: Atomic # 1 Polarization: 39.70 SS G_CDS: 0.17 Total: 39.87 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: 6.11 Total: -2.57 kcal Atomic # 7 Polarization: -104.45 SS G_CDS: -7.11 Total: -111.57 kcal Atomic # 8 Polarization: -31.87 SS G_CDS: -0.16 Total: -32.03 kcal Atomic # 14 Polarization: 36.50 SS G_CDS: 2.03 Total: 38.53 kcal Total: -68.81 1.04 -67.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158638998.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.582 kcal (2) G-P(sol) polarization free energy of solvation -68.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds