Wall clock time and date at job start Wed Apr 1 2020 04:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34220 * 117.00204 * 2 1 4 4 O 1.20829 * 120.00181 * 0.02562 * 3 2 1 5 5 C 1.50705 * 120.00033 * 179.97438 * 3 2 1 6 6 C 1.52838 * 110.35667 * 293.08988 * 5 3 2 7 7 C 1.55064 * 103.87887 * 89.00361 * 6 5 3 8 8 N 1.49174 * 106.82420 * 2.70161 * 7 6 5 9 9 C 1.46496 * 104.15077 * 25.82192 * 8 7 6 10 10 H 1.09003 * 109.82514 * 72.89242 * 9 8 7 11 11 C 1.51483 * 117.51961 * 199.60536 * 9 8 7 12 12 N 1.47708 * 107.11582 * 178.30099 * 11 9 8 13 13 C 1.38091 * 111.00230 * 175.29299 * 12 11 9 14 14 N 1.32268 * 119.90451 * 37.25977 * 13 12 11 15 15 C 1.31973 * 121.86620 * 179.97438 * 14 13 12 16 16 C 1.50698 * 119.27700 * 179.97438 * 15 14 13 17 17 C 1.38677 * 121.44574 * 0.02562 * 15 14 13 18 18 C 1.38013 * 119.62969 * 359.97438 * 17 15 14 19 19 C 1.41002 * 118.27896 * 359.75241 * 18 17 15 20 20 C 1.41021 * 120.70688 * 180.24526 * 19 18 17 21 21 H 1.08000 * 120.00037 * 203.68473 * 20 19 18 22 22 C 1.39943 * 119.99987 * 23.68754 * 20 19 18 23 23 N 1.30874 * 120.00224 * 17.27203 * 22 20 19 24 24 Si 1.86798 * 120.00111 * 197.27910 * 22 20 19 25 25 H 1.48500 * 109.47039 * 59.99494 * 24 22 20 26 26 H 1.48501 * 109.47634 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47158 * 299.99791 * 24 22 20 28 28 C 1.46349 * 113.59589 * 301.20207 * 12 11 9 29 29 C 1.51777 * 110.32738 * 162.97299 * 5 3 2 30 30 H 1.08998 * 109.47280 * 300.00431 * 1 2 3 31 31 H 1.09004 * 109.47168 * 59.99930 * 1 2 3 32 32 H 1.08995 * 109.47479 * 180.02562 * 1 2 3 33 33 H 1.09000 * 110.54157 * 207.60264 * 6 5 3 34 34 H 1.08996 * 110.54560 * 330.25629 * 6 5 3 35 35 H 1.08998 * 109.99322 * 122.04570 * 7 6 5 36 36 H 1.08999 * 109.98755 * 243.31747 * 7 6 5 37 37 H 1.00906 * 111.00011 * 266.30974 * 8 7 6 38 38 H 1.08997 * 109.92847 * 297.69793 * 11 9 8 39 39 H 1.08992 * 109.93064 * 58.81772 * 11 9 8 40 40 H 1.08995 * 109.46909 * 89.99832 * 16 15 14 41 41 H 1.09001 * 109.46818 * 209.99949 * 16 15 14 42 42 H 1.09001 * 109.47036 * 329.99739 * 16 15 14 43 43 H 1.08000 * 120.18765 * 180.02562 * 17 15 14 44 44 H 1.07999 * 120.85995 * 180.02562 * 18 17 15 45 45 H 0.96996 * 119.99991 * 180.02562 * 23 22 20 46 46 H 1.08999 * 109.01476 * 176.23614 * 28 12 11 47 47 H 1.08996 * 109.00789 * 295.11246 * 28 12 11 48 48 H 1.08999 * 109.95138 * 62.08385 * 29 5 3 49 49 H 1.08992 * 109.95026 * 183.35332 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 6 4.1262 0.7416 1.3190 7 6 4.3108 -0.7758 1.0583 8 7 3.9285 -1.0193 -0.3629 9 6 4.1636 0.2675 -1.0225 10 1 5.2350 0.4387 -1.1278 11 6 3.4671 0.5137 -2.3450 12 7 3.8279 1.8788 -2.7788 13 6 3.3180 2.1505 -4.0331 14 7 2.1253 1.6913 -4.3737 15 6 1.6007 1.9280 -5.5613 16 6 0.2371 1.3758 -5.8880 17 6 2.2772 2.6728 -6.5156 18 6 3.5267 3.1816 -6.2244 19 6 4.0717 2.9253 -4.9494 20 6 5.3421 3.4248 -4.5957 21 1 5.9153 2.9413 -3.8185 22 6 5.8602 4.5471 -5.2518 23 7 5.0653 5.3306 -5.9352 24 14 7.6865 4.9269 -5.1523 25 1 8.4596 3.7920 -5.7177 26 1 7.9789 6.1593 -5.9274 27 1 8.0731 5.1308 -3.7331 28 6 3.4462 2.9177 -1.8213 29 6 4.0219 2.6612 -0.4163 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 5.0840 1.2102 1.5452 34 1 3.4184 0.9092 2.1308 35 1 5.3516 -1.0574 1.2178 36 1 3.6640 -1.3493 1.7223 37 1 2.9595 -1.2910 -0.4353 38 1 3.8057 -0.2125 -3.0840 39 1 2.3876 0.4366 -2.2164 40 1 -0.5259 2.1005 -5.6040 41 1 0.1715 1.1796 -6.9582 42 1 0.0796 0.4479 -5.3382 43 1 1.8286 2.8545 -7.4811 44 1 4.0710 3.7646 -6.9525 45 1 5.4245 6.1082 -6.3903 46 1 3.8048 3.8819 -2.1818 47 1 2.3594 2.9490 -1.7458 48 1 3.6618 3.4015 0.2982 49 1 5.1099 2.6943 -0.4712 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158639000.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:39 Heat of formation + Delta-G solvation = -33.933217 kcal Electronic energy + Delta-G solvation = -32749.905856 eV Core-core repulsion = 28676.899099 eV Total energy + Delta-G solvation = -4073.006756 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.57136 -39.12838 -38.38130 -36.64378 -35.73618 -34.23238 -32.44735 -31.12052 -30.49140 -29.19989 -28.37166 -27.81009 -27.56867 -24.62083 -23.60794 -22.64079 -22.21632 -21.14936 -20.61050 -20.16133 -19.45635 -17.35285 -17.29164 -16.57295 -16.16333 -16.09043 -15.52904 -15.24909 -14.61819 -14.47442 -14.31699 -14.05868 -13.96864 -13.86233 -13.31832 -12.95873 -12.87580 -12.74289 -12.39975 -12.35799 -12.27933 -12.08005 -11.76435 -11.69830 -11.49872 -11.45498 -11.32768 -11.18472 -10.99350 -10.89589 -10.86619 -10.59496 -10.54020 -10.41144 -10.17788 -10.08926 -9.80058 -9.31344 -8.56230 -8.42916 -8.06944 -7.77826 -7.16701 -6.78753 -4.38047 2.28844 2.59166 2.69586 2.90656 3.03346 3.06415 3.20101 3.86877 3.98446 4.49901 4.56978 4.59632 4.66466 4.94110 5.02803 5.09036 5.10094 5.19318 5.35291 5.43115 5.52817 5.59058 5.59790 5.68405 5.75177 5.79098 5.89615 5.97179 6.03608 6.08990 6.09466 6.27799 6.31991 6.35451 6.40400 6.41398 6.51385 6.59895 6.67767 6.77451 6.88603 6.96593 7.12425 7.14461 7.50778 7.58891 7.71251 7.83651 7.87899 8.02851 8.27918 8.59060 8.70463 8.92309 9.61451 10.05824 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011130 B = 0.004683 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.179353 B = 5977.928749 C = 7583.205836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.363 6.363 3 C 0.478 3.522 4 O -0.496 6.496 5 C -0.101 4.101 6 C -0.132 4.132 7 C 0.044 3.956 8 N -0.655 5.655 9 C 0.087 3.913 10 H 0.109 0.891 11 C 0.076 3.924 12 N -0.457 5.457 13 C 0.165 3.835 14 N -0.489 5.489 15 C -0.008 4.008 16 C -0.071 4.071 17 C -0.147 4.147 18 C -0.136 4.136 19 C 0.087 3.913 20 C -0.420 4.420 21 H 0.094 0.906 22 C 0.070 3.930 23 N -0.790 5.790 24 Si 0.912 3.088 25 H -0.262 1.262 26 H -0.280 1.280 27 H -0.263 1.263 28 C 0.060 3.940 29 C -0.088 4.088 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.346 0.654 38 H 0.080 0.920 39 H 0.042 0.958 40 H 0.046 0.954 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.096 0.904 44 H 0.129 0.871 45 H 0.283 0.717 46 H 0.085 0.915 47 H 0.039 0.961 48 H 0.076 0.924 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.052 -7.483 10.685 13.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.280 6.280 3 C 0.321 3.679 4 O -0.382 6.382 5 C -0.104 4.104 6 C -0.171 4.171 7 C -0.086 4.086 8 N -0.285 5.285 9 C -0.024 4.024 10 H 0.127 0.873 11 C -0.052 4.052 12 N -0.179 5.179 13 C -0.067 4.067 14 N -0.201 5.201 15 C -0.148 4.148 16 C -0.129 4.129 17 C -0.168 4.168 18 C -0.162 4.162 19 C 0.081 3.919 20 C -0.449 4.449 21 H 0.112 0.888 22 C -0.148 4.148 23 N -0.414 5.414 24 Si 0.736 3.264 25 H -0.187 1.187 26 H -0.205 1.205 27 H -0.188 1.188 28 C -0.067 4.067 29 C -0.126 4.126 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.118 0.882 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.166 0.834 38 H 0.099 0.901 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.114 0.886 44 H 0.146 0.854 45 H 0.094 0.906 46 H 0.104 0.896 47 H 0.057 0.943 48 H 0.095 0.905 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.678 -7.812 10.890 13.506 hybrid contribution -0.674 1.593 -0.244 1.747 sum -2.352 -6.219 10.646 12.551 Atomic orbital electron populations 1.23234 0.76523 1.03491 1.02534 1.86385 1.23379 1.33799 1.84393 1.23499 0.91434 0.81300 0.71708 1.90645 1.66905 1.36199 1.44501 1.22123 0.87242 1.01554 0.99504 1.22601 1.01952 0.97543 0.95053 1.23172 1.02014 0.93520 0.89852 1.62959 1.28512 1.27799 1.09252 1.22493 1.01677 0.85542 0.92717 0.87282 1.21670 0.97434 0.91495 0.94578 1.58391 1.58729 1.00275 1.00484 1.19119 0.89831 1.06987 0.90776 1.66710 1.11861 1.22161 1.19331 1.19966 0.97571 1.05710 0.91573 1.20254 0.93528 0.99498 0.99638 1.21391 0.96758 0.99946 0.98713 1.21631 0.95450 1.02245 0.96899 1.18026 0.92899 0.90917 0.90037 1.19543 1.00269 1.08565 1.16507 0.88834 1.26079 1.00229 0.95295 0.93229 1.69824 1.36876 1.10884 1.23843 0.86289 0.82141 0.78351 0.79571 1.18685 1.20481 1.18761 1.22116 0.98521 0.96204 0.89888 1.21420 1.01811 0.92498 0.96859 0.92287 0.91645 0.88181 0.89355 0.91290 0.90039 0.91410 0.83439 0.90121 0.93953 0.93523 0.93024 0.92990 0.88562 0.85373 0.90621 0.89620 0.94296 0.90534 0.89387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.56 101.05 1.07 1.48 16 2 O -0.36 -5.09 7.13 -39.23 -0.28 -5.37 16 3 C 0.48 7.74 4.43 36.01 0.16 7.90 16 4 O -0.50 -9.47 14.18 -18.75 -0.27 -9.74 16 5 C -0.10 -1.47 0.71 -155.03 -0.11 -1.58 16 6 C -0.13 -1.47 6.11 -25.72 -0.16 -1.63 16 7 C 0.04 0.47 7.38 -1.47 -0.01 0.46 16 8 N -0.66 -8.74 7.39 -103.50 -0.76 -9.50 16 9 C 0.09 1.33 2.54 -67.37 -0.17 1.16 16 10 H 0.11 1.71 8.07 -51.93 -0.42 1.29 16 11 C 0.08 1.44 4.75 -4.15 -0.02 1.42 16 12 N -0.46 -9.74 3.70 -172.75 -0.64 -10.38 16 13 C 0.17 4.06 5.61 -155.02 -0.87 3.19 16 14 N -0.49 -11.92 9.15 -8.11 -0.07 -11.99 16 15 C -0.01 -0.19 6.79 -82.37 -0.56 -0.75 16 16 C -0.07 -1.33 10.15 36.00 0.37 -0.96 16 17 C -0.15 -3.45 9.69 -39.50 -0.38 -3.84 16 18 C -0.14 -3.46 8.80 -38.62 -0.34 -3.80 16 19 C 0.09 2.26 5.61 -106.47 -0.60 1.66 16 20 C -0.42 -10.50 8.71 -37.89 -0.33 -10.83 16 21 H 0.09 2.29 7.58 -52.49 -0.40 1.90 16 22 C 0.07 1.67 5.18 -17.32 -0.09 1.58 16 23 N -0.79 -19.42 10.91 55.55 0.61 -18.82 16 24 Si 0.91 17.91 29.59 -169.99 -5.03 12.88 16 25 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 26 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 27 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 28 C 0.06 1.21 5.05 -3.61 -0.02 1.19 16 29 C -0.09 -1.39 5.01 -26.83 -0.13 -1.53 16 30 H 0.06 0.64 8.13 -51.93 -0.42 0.21 16 31 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 32 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.09 0.86 8.07 -51.93 -0.42 0.44 16 34 H 0.07 0.73 7.91 -51.93 -0.41 0.32 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.35 4.67 6.25 -39.29 -0.25 4.43 16 38 H 0.08 1.62 8.13 -51.93 -0.42 1.20 16 39 H 0.04 0.86 5.97 -51.93 -0.31 0.55 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.05 0.84 8.07 -51.93 -0.42 0.42 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.10 1.99 8.06 -52.49 -0.42 1.57 16 44 H 0.13 3.30 6.19 -52.49 -0.32 2.98 16 45 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 46 H 0.09 1.90 8.12 -51.93 -0.42 1.48 16 47 H 0.04 0.89 5.94 -51.93 -0.31 0.58 16 48 H 0.08 1.16 8.03 -51.93 -0.42 0.74 16 49 H 0.09 1.29 8.09 -51.93 -0.42 0.87 16 LS Contribution 380.21 15.07 5.73 5.73 Total: -1.00 -28.81 380.21 -10.37 -39.18 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: -7.45 Total: 12.88 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -2.20 Total: -4.86 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: -0.87 Total: -50.70 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -0.55 Total: -15.11 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.88 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -28.81 -10.37 -39.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158639000.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.242 kcal (2) G-P(sol) polarization free energy of solvation -28.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds