Wall clock time and date at job start Wed Apr 1 2020 04:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34220 * 117.00204 * 2 1 4 4 O 1.20829 * 120.00181 * 0.02562 * 3 2 1 5 5 C 1.50705 * 120.00033 * 179.97438 * 3 2 1 6 6 C 1.52838 * 110.35667 * 293.08988 * 5 3 2 7 7 C 1.55064 * 103.87887 * 89.00361 * 6 5 3 8 8 N 1.49174 * 106.82420 * 2.70161 * 7 6 5 9 9 C 1.46496 * 104.15077 * 25.82192 * 8 7 6 10 10 H 1.09003 * 109.82514 * 72.89242 * 9 8 7 11 11 C 1.51483 * 117.51961 * 199.60536 * 9 8 7 12 12 N 1.47708 * 107.11582 * 178.30099 * 11 9 8 13 13 C 1.38091 * 111.00230 * 175.29299 * 12 11 9 14 14 N 1.32268 * 119.90451 * 37.25977 * 13 12 11 15 15 C 1.31973 * 121.86620 * 179.97438 * 14 13 12 16 16 C 1.50698 * 119.27700 * 179.97438 * 15 14 13 17 17 C 1.38677 * 121.44574 * 0.02562 * 15 14 13 18 18 C 1.38013 * 119.62969 * 359.97438 * 17 15 14 19 19 C 1.41002 * 118.27896 * 359.75241 * 18 17 15 20 20 C 1.41021 * 120.70688 * 180.24526 * 19 18 17 21 21 H 1.08000 * 120.00037 * 203.68473 * 20 19 18 22 22 C 1.39943 * 119.99987 * 23.68754 * 20 19 18 23 23 N 1.30874 * 120.00224 * 17.27203 * 22 20 19 24 24 Si 1.86798 * 120.00111 * 197.27910 * 22 20 19 25 25 H 1.48500 * 109.47039 * 59.99494 * 24 22 20 26 26 H 1.48501 * 109.47634 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47158 * 299.99791 * 24 22 20 28 28 C 1.46349 * 113.59589 * 301.20207 * 12 11 9 29 29 C 1.51777 * 110.32738 * 162.97299 * 5 3 2 30 30 H 1.08998 * 109.47280 * 300.00431 * 1 2 3 31 31 H 1.09004 * 109.47168 * 59.99930 * 1 2 3 32 32 H 1.08995 * 109.47479 * 180.02562 * 1 2 3 33 33 H 1.09000 * 110.54157 * 207.60264 * 6 5 3 34 34 H 1.08996 * 110.54560 * 330.25629 * 6 5 3 35 35 H 1.08998 * 109.99322 * 122.04570 * 7 6 5 36 36 H 1.08999 * 109.98755 * 243.31747 * 7 6 5 37 37 H 1.00906 * 111.00011 * 266.30974 * 8 7 6 38 38 H 1.08997 * 109.92847 * 297.69793 * 11 9 8 39 39 H 1.08992 * 109.93064 * 58.81772 * 11 9 8 40 40 H 1.08995 * 109.46909 * 89.99832 * 16 15 14 41 41 H 1.09001 * 109.46818 * 209.99949 * 16 15 14 42 42 H 1.09001 * 109.47036 * 329.99739 * 16 15 14 43 43 H 1.08000 * 120.18765 * 180.02562 * 17 15 14 44 44 H 1.07999 * 120.85995 * 180.02562 * 18 17 15 45 45 H 0.96996 * 119.99991 * 180.02562 * 23 22 20 46 46 H 1.08999 * 109.01476 * 176.23614 * 28 12 11 47 47 H 1.08996 * 109.00789 * 295.11246 * 28 12 11 48 48 H 1.08999 * 109.95138 * 62.08385 * 29 5 3 49 49 H 1.08992 * 109.95026 * 183.35332 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 6 4.1262 0.7416 1.3190 7 6 4.3108 -0.7758 1.0583 8 7 3.9285 -1.0193 -0.3629 9 6 4.1636 0.2675 -1.0225 10 1 5.2350 0.4387 -1.1278 11 6 3.4671 0.5137 -2.3450 12 7 3.8279 1.8788 -2.7788 13 6 3.3180 2.1505 -4.0331 14 7 2.1253 1.6913 -4.3737 15 6 1.6007 1.9280 -5.5613 16 6 0.2371 1.3758 -5.8880 17 6 2.2772 2.6728 -6.5156 18 6 3.5267 3.1816 -6.2244 19 6 4.0717 2.9253 -4.9494 20 6 5.3421 3.4248 -4.5957 21 1 5.9153 2.9413 -3.8185 22 6 5.8602 4.5471 -5.2518 23 7 5.0653 5.3306 -5.9352 24 14 7.6865 4.9269 -5.1523 25 1 8.4596 3.7920 -5.7177 26 1 7.9789 6.1593 -5.9274 27 1 8.0731 5.1308 -3.7331 28 6 3.4462 2.9177 -1.8213 29 6 4.0219 2.6612 -0.4163 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 5.0840 1.2102 1.5452 34 1 3.4184 0.9092 2.1308 35 1 5.3516 -1.0574 1.2178 36 1 3.6640 -1.3493 1.7223 37 1 2.9595 -1.2910 -0.4353 38 1 3.8057 -0.2125 -3.0840 39 1 2.3876 0.4366 -2.2164 40 1 -0.5259 2.1005 -5.6040 41 1 0.1715 1.1796 -6.9582 42 1 0.0796 0.4479 -5.3382 43 1 1.8286 2.8545 -7.4811 44 1 4.0710 3.7646 -6.9525 45 1 5.4245 6.1082 -6.3903 46 1 3.8048 3.8819 -2.1818 47 1 2.3594 2.9490 -1.7458 48 1 3.6618 3.4015 0.2982 49 1 5.1099 2.6943 -0.4712 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158639000.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:37 Heat of formation + Delta-G solvation = -51.424237 kcal Electronic energy + Delta-G solvation = -32750.664323 eV Core-core repulsion = 28676.899099 eV Total energy + Delta-G solvation = -4073.765224 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.82903 -40.73940 -39.77220 -37.91082 -37.22612 -36.07481 -33.80670 -32.82211 -32.10080 -30.59620 -29.66878 -29.43658 -28.76244 -26.17925 -25.12082 -23.90985 -23.72005 -22.66805 -21.96416 -21.86369 -20.71243 -19.16836 -18.58000 -17.86976 -17.66419 -17.48340 -17.08545 -16.67862 -16.08843 -15.77993 -15.70682 -15.58789 -15.36697 -15.15090 -14.76462 -14.41192 -14.32245 -14.10252 -13.94928 -13.69712 -13.60220 -13.40482 -13.28851 -13.17962 -13.02905 -12.89284 -12.78293 -12.64668 -12.56311 -12.22517 -12.17435 -12.07583 -11.83334 -11.77496 -11.67340 -11.45722 -11.25631 -11.10651 -10.29231 -9.97457 -9.64864 -9.55347 -8.98647 -8.59769 -6.28930 0.75107 1.03089 1.04379 1.41784 1.52511 1.57450 1.59105 2.21575 2.67729 2.73698 3.11289 3.46230 3.55980 3.63861 3.79251 3.90086 4.02776 4.04711 4.18349 4.21897 4.23659 4.25843 4.36524 4.42707 4.52608 4.54563 4.60475 4.62226 4.70764 4.74863 4.86305 4.89256 4.89546 4.94780 5.00267 5.01351 5.06586 5.08838 5.14289 5.17781 5.27847 5.31116 5.34975 5.70068 5.74614 5.83310 6.13733 6.23450 6.38418 6.45735 6.61879 6.69819 6.81833 7.05453 7.73096 8.27271 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011130 B = 0.004683 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.179353 B = 5977.928749 C = 7583.205836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.358 6.358 3 C 0.475 3.525 4 O -0.534 6.534 5 C -0.100 4.100 6 C -0.123 4.123 7 C 0.046 3.954 8 N -0.659 5.659 9 C 0.097 3.903 10 H 0.111 0.889 11 C 0.085 3.915 12 N -0.458 5.458 13 C 0.154 3.846 14 N -0.503 5.503 15 C -0.022 4.022 16 C -0.065 4.065 17 C -0.153 4.153 18 C -0.159 4.159 19 C 0.056 3.944 20 C -0.441 4.441 21 H 0.091 0.909 22 C 0.034 3.966 23 N -0.819 5.819 24 Si 0.984 3.016 25 H -0.260 1.260 26 H -0.271 1.271 27 H -0.255 1.255 28 C 0.070 3.930 29 C -0.079 4.079 30 H 0.067 0.933 31 H 0.041 0.959 32 H 0.138 0.862 33 H 0.109 0.891 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.344 0.656 38 H 0.062 0.938 39 H 0.025 0.975 40 H 0.056 0.944 41 H 0.078 0.922 42 H 0.056 0.944 43 H 0.123 0.877 44 H 0.118 0.882 45 H 0.290 0.710 46 H 0.056 0.944 47 H 0.008 0.992 48 H 0.085 0.915 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.101 -8.755 12.449 15.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.275 6.275 3 C 0.320 3.680 4 O -0.423 6.423 5 C -0.103 4.103 6 C -0.162 4.162 7 C -0.083 4.083 8 N -0.288 5.288 9 C -0.014 4.014 10 H 0.129 0.871 11 C -0.043 4.043 12 N -0.180 5.180 13 C -0.079 4.079 14 N -0.216 5.216 15 C -0.162 4.162 16 C -0.122 4.122 17 C -0.173 4.173 18 C -0.186 4.186 19 C 0.050 3.950 20 C -0.470 4.470 21 H 0.109 0.891 22 C -0.182 4.182 23 N -0.445 5.445 24 Si 0.804 3.196 25 H -0.185 1.185 26 H -0.196 1.196 27 H -0.179 1.179 28 C -0.057 4.057 29 C -0.117 4.117 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.156 0.844 33 H 0.128 0.872 34 H 0.098 0.902 35 H 0.117 0.883 36 H 0.105 0.895 37 H 0.164 0.836 38 H 0.081 0.919 39 H 0.044 0.956 40 H 0.074 0.926 41 H 0.097 0.903 42 H 0.075 0.925 43 H 0.141 0.859 44 H 0.136 0.864 45 H 0.101 0.899 46 H 0.075 0.925 47 H 0.027 0.973 48 H 0.103 0.897 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.742 -9.116 12.665 15.623 hybrid contribution -1.123 1.947 -0.847 2.402 sum -1.865 -7.169 11.818 13.948 Atomic orbital electron populations 1.23491 0.75127 1.05786 1.01789 1.86376 1.24728 1.32596 1.83767 1.23878 0.92157 0.81302 0.70677 1.90632 1.67802 1.37457 1.46391 1.22161 0.86364 1.00224 1.01540 1.22643 1.02995 0.97673 0.92906 1.23308 1.03513 0.93326 0.88149 1.62987 1.28470 1.26290 1.11099 1.22274 1.01051 0.87180 0.90926 0.87104 1.21560 0.96781 0.89671 0.96278 1.58386 1.58401 1.01520 0.99703 1.19472 0.89894 1.06554 0.91958 1.66856 1.11956 1.22714 1.20072 1.20777 0.99291 1.05060 0.91058 1.20286 0.90878 0.99604 1.01481 1.21684 0.96169 0.99437 1.00007 1.21679 0.96634 1.03356 0.96904 1.18402 0.93880 0.91946 0.90739 1.19660 1.00440 1.09503 1.17380 0.89127 1.26890 1.04555 0.94464 0.92320 1.69873 1.38858 1.11380 1.24350 0.85209 0.76173 0.78270 0.79907 1.18457 1.19566 1.17934 1.21972 0.96735 0.94785 0.92191 1.21364 1.02557 0.93970 0.93841 0.91462 0.93996 0.84353 0.87208 0.90243 0.88303 0.89504 0.83617 0.91913 0.95631 0.92572 0.90329 0.92535 0.85916 0.86417 0.89906 0.92544 0.97337 0.89670 0.87623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.56 113.37 1.20 1.89 16 2 O -0.36 -9.68 7.13 -51.32 -0.37 -10.05 16 3 C 0.48 15.21 4.43 71.24 0.32 15.53 16 4 O -0.53 -20.77 14.18 21.96 0.31 -20.46 16 5 C -0.10 -2.76 0.71 -52.52 -0.04 -2.80 16 6 C -0.12 -2.32 6.11 31.25 0.19 -2.13 16 7 C 0.05 0.80 7.38 86.57 0.64 1.44 16 8 N -0.66 -16.14 7.39 -481.37 -3.56 -19.69 16 9 C 0.10 2.88 2.54 45.36 0.12 2.99 16 10 H 0.11 3.30 8.07 -2.39 -0.02 3.28 16 11 C 0.08 3.30 4.75 85.65 0.41 3.70 16 12 N -0.46 -20.33 3.70 -700.46 -2.59 -22.92 16 13 C 0.15 7.91 5.61 134.05 0.75 8.66 16 14 N -0.50 -25.45 9.15 -179.57 -1.64 -27.09 16 15 C -0.02 -1.05 6.79 42.64 0.29 -0.76 16 16 C -0.06 -2.36 10.15 71.24 0.72 -1.63 16 17 C -0.15 -7.29 9.69 22.32 0.22 -7.07 16 18 C -0.16 -8.44 8.80 22.89 0.20 -8.24 16 19 C 0.06 3.06 5.61 -21.06 -0.12 2.94 16 20 C -0.44 -22.91 8.71 23.37 0.20 -22.71 16 21 H 0.09 4.60 7.58 -2.91 -0.02 4.58 16 22 C 0.03 1.63 5.18 85.25 0.44 2.07 16 23 N -0.82 -41.45 10.91 21.83 0.24 -41.21 16 24 Si 0.98 36.79 29.59 68.60 2.03 38.82 16 25 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 26 H -0.27 -9.68 7.11 99.48 0.71 -8.97 16 27 H -0.26 -9.17 7.11 99.48 0.71 -8.47 16 28 C 0.07 2.98 5.05 86.74 0.44 3.42 16 29 C -0.08 -2.48 5.01 30.53 0.15 -2.33 16 30 H 0.07 1.38 8.13 -2.39 -0.02 1.36 16 31 H 0.04 1.12 8.13 -2.39 -0.02 1.10 16 32 H 0.14 1.94 8.14 -2.39 -0.02 1.93 16 33 H 0.11 1.65 8.07 -2.39 -0.02 1.63 16 34 H 0.08 1.38 7.91 -2.39 -0.02 1.36 16 35 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.09 1.23 8.14 -2.39 -0.02 1.22 16 37 H 0.34 8.67 6.25 -89.69 -0.56 8.11 16 38 H 0.06 2.61 8.13 -2.39 -0.02 2.59 16 39 H 0.03 1.07 5.97 -2.39 -0.01 1.06 16 40 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.08 2.41 8.07 -2.39 -0.02 2.39 16 42 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.12 5.04 8.06 -2.91 -0.02 5.01 16 44 H 0.12 6.36 6.19 -2.91 -0.02 6.34 16 45 H 0.29 13.31 8.30 -92.71 -0.77 12.54 16 46 H 0.06 2.67 8.12 -2.39 -0.02 2.65 16 47 H 0.01 0.41 5.94 -2.39 -0.01 0.39 16 48 H 0.08 2.52 8.03 -2.39 -0.02 2.50 16 49 H 0.11 2.93 8.09 -2.39 -0.02 2.91 16 Total: -1.00 -66.63 380.21 0.96 -65.68 By element: Atomic # 1 Polarization: 41.53 SS G_CDS: 0.41 Total: 41.94 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: 6.13 Total: -5.01 kcal Atomic # 7 Polarization: -103.37 SS G_CDS: -7.55 Total: -110.92 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -0.05 Total: -30.51 kcal Atomic # 14 Polarization: 36.79 SS G_CDS: 2.03 Total: 38.82 kcal Total: -66.63 0.96 -65.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158639000.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.252 kcal (2) G-P(sol) polarization free energy of solvation -66.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds