Wall clock time and date at job start Wed Apr 1 2020 04:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34231 * 117.00326 * 2 1 4 4 O 1.20835 * 119.99395 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00158 * 180.27911 * 3 2 1 6 6 C 1.53832 * 109.62859 * 66.75157 * 5 3 2 7 7 C 1.54307 * 104.51166 * 93.14401 * 6 5 3 8 8 N 1.48087 * 106.91301 * 359.15761 * 7 6 5 9 9 C 1.49407 * 105.40005 * 26.18993 * 8 7 6 10 10 H 1.09003 * 112.35668 * 198.74719 * 9 8 7 11 11 C 1.53047 * 107.16874 * 75.19449 * 9 8 7 12 12 N 1.46500 * 110.85591 * 196.05070 * 11 9 8 13 13 C 1.38366 * 111.00000 * 187.11401 * 12 11 9 14 14 C 1.39709 * 119.42930 * 180.02562 * 13 12 11 15 15 C 1.36560 * 119.49364 * 180.02562 * 14 13 12 16 16 C 1.41325 * 118.41144 * 0.02562 * 15 14 13 17 17 C 1.41203 * 120.57422 * 179.97438 * 16 15 14 18 18 H 1.07992 * 120.00022 * 154.75140 * 17 16 15 19 19 C 1.39866 * 119.99527 * 334.74743 * 17 16 15 20 20 N 1.30897 * 120.00366 * 343.69280 * 19 17 16 21 21 Si 1.86806 * 119.99751 * 163.69391 * 19 17 16 22 22 H 1.48497 * 109.47230 * 89.99926 * 21 19 17 23 23 H 1.48490 * 109.47192 * 209.99990 * 21 19 17 24 24 H 1.48502 * 109.46845 * 329.99747 * 21 19 17 25 25 C 1.40758 * 118.85480 * 359.97438 * 16 15 14 26 26 C 1.50704 * 119.81259 * 180.02562 * 25 16 15 27 27 N 1.31489 * 120.37111 * 359.72603 * 25 16 15 28 28 C 1.47142 * 110.23077 * 63.70899 * 12 11 9 29 29 C 1.50954 * 108.74389 * 295.39935 * 28 12 11 30 30 H 1.08998 * 109.46846 * 299.99368 * 1 2 3 31 31 H 1.09005 * 109.47524 * 59.99434 * 1 2 3 32 32 H 1.08997 * 109.47283 * 179.97438 * 1 2 3 33 33 H 1.08994 * 110.42428 * 211.90196 * 6 5 3 34 34 H 1.08997 * 110.42278 * 334.38593 * 6 5 3 35 35 H 1.09009 * 109.96983 * 239.79449 * 7 6 5 36 36 H 1.08998 * 110.00458 * 118.54411 * 7 6 5 37 37 H 1.00895 * 111.00021 * 265.92656 * 8 7 6 38 38 H 1.09000 * 109.20352 * 316.41156 * 11 9 8 39 39 H 1.09001 * 109.20223 * 75.69976 * 11 9 8 40 40 H 1.08001 * 120.25652 * 359.97438 * 14 13 12 41 41 H 1.08003 * 120.79785 * 179.97438 * 15 14 13 42 42 H 0.96999 * 119.99803 * 180.02562 * 20 19 17 43 43 H 1.09003 * 109.46930 * 90.00221 * 26 25 16 44 44 H 1.09002 * 109.47140 * 209.99846 * 26 25 16 45 45 H 1.08994 * 109.47500 * 329.99940 * 26 25 16 46 46 H 1.08995 * 109.68961 * 54.48897 * 28 12 11 47 47 H 1.09006 * 109.68490 * 175.06588 * 28 12 11 48 48 H 1.09003 * 107.92924 * 297.14616 * 29 28 12 49 49 H 1.08996 * 109.30696 * 178.59240 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0064 6 6 4.1065 0.7336 -1.3412 7 6 4.2446 1.9824 -2.2371 8 7 3.7827 3.1398 -1.4372 9 6 4.0073 2.7520 -0.0119 10 1 3.4236 3.3593 0.6799 11 6 5.5106 2.8606 0.2542 12 7 5.8754 2.1506 1.4826 13 6 7.1999 2.3779 1.8120 14 6 7.7346 1.7817 2.9568 15 6 9.0416 2.0056 3.2834 16 6 9.8113 2.8408 2.4424 17 6 11.1670 3.1036 2.7372 18 1 11.8491 3.3744 1.9451 19 6 11.6261 3.0133 4.0553 20 7 10.7717 3.0040 5.0469 21 14 13.4589 2.9060 4.4005 22 1 14.0128 4.2741 4.5639 23 1 13.6833 2.1291 5.6459 24 1 14.1374 2.2294 3.2660 25 6 9.2032 3.4063 1.3059 26 6 10.0040 4.2997 0.3940 27 7 7.9419 3.1546 1.0322 28 6 5.6078 0.7111 1.3368 29 6 4.1208 0.5080 1.1751 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 5.0777 0.2610 -1.1949 34 1 3.4008 0.0276 -1.7788 35 1 3.6239 1.8729 -3.1265 36 1 5.2866 2.1210 -2.5254 37 1 2.8075 3.3327 -1.6101 38 1 6.0554 2.4284 -0.5850 39 1 5.7820 3.9116 0.3536 40 1 7.1189 1.1494 3.5792 41 1 9.4764 1.5558 4.1637 42 1 11.0903 2.9418 5.9610 43 1 10.4761 3.6972 -0.3821 44 1 9.3434 5.0337 -0.0675 45 1 10.7717 4.8143 0.9718 46 1 6.1160 0.3310 0.4506 47 1 5.9627 0.1803 2.2204 48 1 3.6337 0.8540 2.0868 49 1 3.9145 -0.5538 1.0412 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158642344.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:52 Heat of formation + Delta-G solvation = -36.282069 kcal Electronic energy + Delta-G solvation = -31409.609041 eV Core-core repulsion = 27336.500431 eV Total energy + Delta-G solvation = -4073.108610 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.61804 -39.70939 -38.52843 -36.68972 -35.95973 -33.98068 -32.93977 -31.47318 -30.35467 -29.50291 -28.60421 -27.93006 -26.86236 -25.80158 -23.78733 -23.09210 -21.82439 -21.29155 -20.71811 -19.96022 -18.70241 -17.76630 -17.31186 -17.19518 -16.63947 -16.55866 -15.56120 -15.40924 -15.06955 -14.77819 -14.30041 -13.95772 -13.94393 -13.61513 -13.53333 -13.38851 -12.95808 -12.82417 -12.54558 -12.38133 -12.28930 -11.98478 -11.93199 -11.74388 -11.63028 -11.48980 -11.37892 -11.21182 -11.07836 -11.05020 -10.94651 -10.84688 -10.68999 -10.60594 -10.34416 -10.18855 -9.78803 -9.39323 -8.73603 -8.53084 -8.25268 -8.03813 -7.05670 -6.79680 -4.38636 1.97216 2.44499 2.57572 2.93051 3.01766 3.05195 3.13318 3.85099 3.93578 4.24691 4.37294 4.43709 4.59346 4.80792 4.85651 4.87074 4.89394 5.03062 5.12092 5.22273 5.31325 5.43786 5.49956 5.57543 5.58394 5.70551 5.74827 5.79447 5.90427 5.94854 6.07526 6.10060 6.19480 6.31882 6.36000 6.45417 6.53229 6.64669 6.66866 6.71852 6.85435 6.96309 7.06914 7.29521 7.33601 7.36332 7.45895 7.52523 7.80083 7.99914 8.17775 8.47193 8.69270 8.77582 9.60791 10.07423 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.024182 B = 0.002606 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.612678 B =10743.495275 C =11409.719744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.355 6.355 3 C 0.474 3.526 4 O -0.505 6.505 5 C -0.077 4.077 6 C -0.142 4.142 7 C 0.038 3.962 8 N -0.664 5.664 9 C 0.100 3.900 10 H 0.104 0.896 11 C 0.090 3.910 12 N -0.462 5.462 13 C 0.166 3.834 14 C -0.150 4.150 15 C -0.117 4.117 16 C 0.058 3.942 17 C -0.445 4.445 18 H 0.084 0.916 19 C 0.074 3.926 20 N -0.792 5.792 21 Si 0.909 3.091 22 H -0.269 1.269 23 H -0.276 1.276 24 H -0.260 1.260 25 C 0.018 3.982 26 C -0.070 4.070 27 N -0.488 5.488 28 C 0.059 3.941 29 C -0.098 4.098 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.341 0.659 38 H 0.046 0.954 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.127 0.873 42 H 0.282 0.718 43 H 0.046 0.954 44 H 0.048 0.952 45 H 0.066 0.934 46 H 0.037 0.963 47 H 0.087 0.913 48 H 0.075 0.925 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.260 -7.502 -8.071 17.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.272 6.272 3 C 0.317 3.683 4 O -0.392 6.392 5 C -0.080 4.080 6 C -0.181 4.181 7 C -0.092 4.092 8 N -0.292 5.292 9 C -0.010 4.010 10 H 0.122 0.878 11 C -0.039 4.039 12 N -0.182 5.182 13 C -0.064 4.064 14 C -0.173 4.173 15 C -0.143 4.143 16 C 0.054 3.946 17 C -0.475 4.475 18 H 0.102 0.898 19 C -0.145 4.145 20 N -0.417 5.417 21 Si 0.733 3.267 22 H -0.194 1.194 23 H -0.201 1.201 24 H -0.184 1.184 25 C -0.124 4.124 26 C -0.127 4.127 27 N -0.201 5.201 28 C -0.069 4.069 29 C -0.136 4.136 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.119 0.881 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.103 0.897 37 H 0.158 0.842 38 H 0.064 0.936 39 H 0.110 0.890 40 H 0.118 0.882 41 H 0.145 0.855 42 H 0.093 0.907 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.085 0.915 46 H 0.055 0.945 47 H 0.105 0.895 48 H 0.093 0.907 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.618 -6.214 -8.274 17.103 hybrid contribution 0.498 -1.405 0.764 1.675 sum -13.120 -7.619 -7.510 16.929 Atomic orbital electron populations 1.23273 0.76534 1.03655 1.02539 1.86523 1.23216 1.33487 1.83934 1.23822 0.91727 0.81295 0.71491 1.90650 1.67007 1.36292 1.45273 1.21667 0.86453 1.01157 0.98716 1.22887 1.02741 0.99369 0.93059 1.22899 1.02409 0.87888 0.95977 1.63001 1.25135 1.36809 1.04258 1.22804 0.98074 0.89565 0.90589 0.87752 1.21568 0.90658 1.01180 0.90448 1.59440 1.18236 1.07541 1.33025 1.18762 0.88035 1.04268 0.95368 1.20808 0.96350 1.03103 0.96991 1.21303 0.92953 0.98867 1.01198 1.18281 0.94135 0.90527 0.91678 1.19478 0.94441 1.40259 0.93340 0.89844 1.25957 1.00288 0.92225 0.95996 1.69822 1.36616 1.34708 1.00568 0.86287 0.82258 0.79314 0.78805 1.19368 1.20084 1.18382 1.20783 0.89379 1.02963 0.99303 1.20237 0.98161 0.97206 0.97124 1.66742 1.07133 1.16098 1.30082 1.21914 0.94009 0.89521 1.01417 1.20762 0.97011 0.99660 0.96201 0.91823 0.92017 0.88101 0.89184 0.90586 0.91634 0.89725 0.84233 0.93571 0.89025 0.88233 0.85521 0.90677 0.93541 0.93314 0.91494 0.94475 0.89510 0.90650 0.90290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.87 10.30 -39.26 -0.40 -4.28 16 3 C 0.47 6.00 6.23 36.00 0.22 6.22 16 4 O -0.51 -7.36 14.52 -18.76 -0.27 -7.63 16 5 C -0.08 -0.97 0.61 -155.44 -0.10 -1.06 16 6 C -0.14 -1.57 5.44 -25.61 -0.14 -1.71 16 7 C 0.04 0.44 6.75 -2.49 -0.02 0.42 16 8 N -0.66 -8.97 7.09 -102.62 -0.73 -9.70 16 9 C 0.10 1.47 3.15 -65.68 -0.21 1.27 16 10 H 0.10 1.67 7.65 -51.93 -0.40 1.27 16 11 C 0.09 1.57 3.88 -4.02 -0.02 1.55 16 12 N -0.46 -8.58 4.69 -174.43 -0.82 -9.40 16 13 C 0.17 3.70 6.38 -155.13 -0.99 2.71 16 14 C -0.15 -3.41 9.07 -39.64 -0.36 -3.77 16 15 C -0.12 -2.92 8.73 -39.01 -0.34 -3.26 16 16 C 0.06 1.50 5.58 -106.65 -0.59 0.90 16 17 C -0.45 -11.12 8.14 -37.85 -0.31 -11.43 16 18 H 0.08 1.98 6.86 -52.49 -0.36 1.62 16 19 C 0.07 1.75 5.19 -17.34 -0.09 1.66 16 20 N -0.79 -19.61 10.95 55.54 0.61 -19.00 16 21 Si 0.91 17.80 29.59 -169.99 -5.03 12.77 16 22 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 23 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 24 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 25 C 0.02 0.43 6.86 -81.79 -0.56 -0.13 16 26 C -0.07 -1.45 9.58 36.01 0.34 -1.11 16 27 N -0.49 -11.55 8.50 -8.04 -0.07 -11.62 16 28 C 0.06 0.89 5.11 -4.72 -0.02 0.86 16 29 C -0.10 -1.23 4.53 -28.58 -0.13 -1.36 16 30 H 0.06 0.51 8.13 -51.93 -0.42 0.08 16 31 H 0.06 0.47 8.13 -51.93 -0.42 0.04 16 32 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.09 1.02 6.45 -51.93 -0.33 0.69 16 34 H 0.08 0.74 7.73 -51.93 -0.40 0.34 16 35 H 0.07 0.64 8.14 -51.92 -0.42 0.21 16 36 H 0.08 1.04 7.57 -51.93 -0.39 0.65 16 37 H 0.34 4.44 7.78 -39.29 -0.31 4.14 16 38 H 0.05 0.84 6.38 -51.93 -0.33 0.51 16 39 H 0.09 1.85 7.60 -51.93 -0.39 1.45 16 40 H 0.10 2.03 7.20 -52.49 -0.38 1.65 16 41 H 0.13 3.22 6.26 -52.48 -0.33 2.89 16 42 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 43 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.07 1.37 6.76 -51.93 -0.35 1.02 16 46 H 0.04 0.57 6.63 -51.93 -0.34 0.22 16 47 H 0.09 1.31 6.65 -51.93 -0.35 0.96 16 48 H 0.07 0.98 8.12 -51.93 -0.42 0.56 16 49 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 377.63 15.07 5.69 5.69 Total: -1.00 -28.16 377.63 -10.44 -38.59 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -7.18 Total: 11.47 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -2.23 Total: -6.90 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: -1.01 Total: -49.72 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: -0.68 Total: -11.91 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.77 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -28.16 -10.44 -38.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158642344.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.310 kcal (2) G-P(sol) polarization free energy of solvation -28.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds