Wall clock time and date at job start Wed Apr 1 2020 04:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34231 * 117.00326 * 2 1 4 4 O 1.20835 * 119.99395 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00158 * 180.27911 * 3 2 1 6 6 C 1.53832 * 109.62859 * 66.75157 * 5 3 2 7 7 C 1.54307 * 104.51166 * 93.14401 * 6 5 3 8 8 N 1.48087 * 106.91301 * 359.15761 * 7 6 5 9 9 C 1.49407 * 105.40005 * 26.18993 * 8 7 6 10 10 H 1.09003 * 112.35668 * 198.74719 * 9 8 7 11 11 C 1.53047 * 107.16874 * 75.19449 * 9 8 7 12 12 N 1.46500 * 110.85591 * 196.05070 * 11 9 8 13 13 C 1.38366 * 111.00000 * 187.11401 * 12 11 9 14 14 C 1.39709 * 119.42930 * 180.02562 * 13 12 11 15 15 C 1.36560 * 119.49364 * 180.02562 * 14 13 12 16 16 C 1.41325 * 118.41144 * 0.02562 * 15 14 13 17 17 C 1.41203 * 120.57422 * 179.97438 * 16 15 14 18 18 H 1.07992 * 120.00022 * 154.75140 * 17 16 15 19 19 C 1.39866 * 119.99527 * 334.74743 * 17 16 15 20 20 N 1.30897 * 120.00366 * 343.69280 * 19 17 16 21 21 Si 1.86806 * 119.99751 * 163.69391 * 19 17 16 22 22 H 1.48497 * 109.47230 * 89.99926 * 21 19 17 23 23 H 1.48490 * 109.47192 * 209.99990 * 21 19 17 24 24 H 1.48502 * 109.46845 * 329.99747 * 21 19 17 25 25 C 1.40758 * 118.85480 * 359.97438 * 16 15 14 26 26 C 1.50704 * 119.81259 * 180.02562 * 25 16 15 27 27 N 1.31489 * 120.37111 * 359.72603 * 25 16 15 28 28 C 1.47142 * 110.23077 * 63.70899 * 12 11 9 29 29 C 1.50954 * 108.74389 * 295.39935 * 28 12 11 30 30 H 1.08998 * 109.46846 * 299.99368 * 1 2 3 31 31 H 1.09005 * 109.47524 * 59.99434 * 1 2 3 32 32 H 1.08997 * 109.47283 * 179.97438 * 1 2 3 33 33 H 1.08994 * 110.42428 * 211.90196 * 6 5 3 34 34 H 1.08997 * 110.42278 * 334.38593 * 6 5 3 35 35 H 1.09009 * 109.96983 * 239.79449 * 7 6 5 36 36 H 1.08998 * 110.00458 * 118.54411 * 7 6 5 37 37 H 1.00895 * 111.00021 * 265.92656 * 8 7 6 38 38 H 1.09000 * 109.20352 * 316.41156 * 11 9 8 39 39 H 1.09001 * 109.20223 * 75.69976 * 11 9 8 40 40 H 1.08001 * 120.25652 * 359.97438 * 14 13 12 41 41 H 1.08003 * 120.79785 * 179.97438 * 15 14 13 42 42 H 0.96999 * 119.99803 * 180.02562 * 20 19 17 43 43 H 1.09003 * 109.46930 * 90.00221 * 26 25 16 44 44 H 1.09002 * 109.47140 * 209.99846 * 26 25 16 45 45 H 1.08994 * 109.47500 * 329.99940 * 26 25 16 46 46 H 1.08995 * 109.68961 * 54.48897 * 28 12 11 47 47 H 1.09006 * 109.68490 * 175.06588 * 28 12 11 48 48 H 1.09003 * 107.92924 * 297.14616 * 29 28 12 49 49 H 1.08996 * 109.30696 * 178.59240 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0064 6 6 4.1065 0.7336 -1.3412 7 6 4.2446 1.9824 -2.2371 8 7 3.7827 3.1398 -1.4372 9 6 4.0073 2.7520 -0.0119 10 1 3.4236 3.3593 0.6799 11 6 5.5106 2.8606 0.2542 12 7 5.8754 2.1506 1.4826 13 6 7.1999 2.3779 1.8120 14 6 7.7346 1.7817 2.9568 15 6 9.0416 2.0056 3.2834 16 6 9.8113 2.8408 2.4424 17 6 11.1670 3.1036 2.7372 18 1 11.8491 3.3744 1.9451 19 6 11.6261 3.0133 4.0553 20 7 10.7717 3.0040 5.0469 21 14 13.4589 2.9060 4.4005 22 1 14.0128 4.2741 4.5639 23 1 13.6833 2.1291 5.6459 24 1 14.1374 2.2294 3.2660 25 6 9.2032 3.4063 1.3059 26 6 10.0040 4.2997 0.3940 27 7 7.9419 3.1546 1.0322 28 6 5.6078 0.7111 1.3368 29 6 4.1208 0.5080 1.1751 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 5.0777 0.2610 -1.1949 34 1 3.4008 0.0276 -1.7788 35 1 3.6239 1.8729 -3.1265 36 1 5.2866 2.1210 -2.5254 37 1 2.8075 3.3327 -1.6101 38 1 6.0554 2.4284 -0.5850 39 1 5.7820 3.9116 0.3536 40 1 7.1189 1.1494 3.5792 41 1 9.4764 1.5558 4.1637 42 1 11.0903 2.9418 5.9610 43 1 10.4761 3.6972 -0.3821 44 1 9.3434 5.0337 -0.0675 45 1 10.7717 4.8143 0.9718 46 1 6.1160 0.3310 0.4506 47 1 5.9627 0.1803 2.2204 48 1 3.6337 0.8540 2.0868 49 1 3.9145 -0.5538 1.0412 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158642344.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:50 Heat of formation + Delta-G solvation = -53.255963 kcal Electronic energy + Delta-G solvation = -31410.345084 eV Core-core repulsion = 27336.500431 eV Total energy + Delta-G solvation = -4073.844653 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.68422 -41.02949 -39.97405 -37.79197 -37.24680 -35.65521 -34.22198 -33.21845 -32.02177 -30.69340 -29.76792 -28.80560 -28.54705 -27.18390 -25.36990 -24.25103 -23.10789 -22.66655 -22.00135 -21.59087 -19.86969 -19.13487 -18.78952 -18.18351 -18.03514 -17.46211 -17.12988 -16.79490 -16.40068 -16.06899 -15.68945 -15.41748 -15.14642 -14.82386 -14.77320 -14.49470 -14.35083 -14.21800 -13.83178 -13.68793 -13.55306 -13.32689 -13.26619 -13.12176 -13.07774 -12.85921 -12.77241 -12.70312 -12.62904 -12.42500 -12.17271 -11.99911 -11.84305 -11.78636 -11.64840 -11.49601 -11.26702 -11.15350 -10.24761 -10.10062 -9.88812 -9.69385 -8.82441 -8.56627 -6.25464 0.78825 1.00429 1.08585 1.41764 1.50324 1.56634 1.58188 2.21665 2.66001 2.78564 3.09218 3.35321 3.46931 3.67177 3.75910 3.86509 3.98843 4.06284 4.11155 4.23491 4.27157 4.28558 4.30863 4.40128 4.52256 4.58515 4.61191 4.68311 4.68384 4.73064 4.81647 4.84121 4.91929 4.98142 5.00055 5.00253 5.04602 5.13261 5.17890 5.19703 5.27264 5.31045 5.51076 5.56650 5.64446 5.83694 5.96323 6.24313 6.28915 6.39258 6.59019 6.65727 6.84967 6.94595 7.77015 8.31760 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.024182 B = 0.002606 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.612678 B =10743.495275 C =11409.719744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.354 6.354 3 C 0.480 3.520 4 O -0.529 6.529 5 C -0.074 4.074 6 C -0.134 4.134 7 C 0.037 3.963 8 N -0.674 5.674 9 C 0.104 3.896 10 H 0.088 0.912 11 C 0.104 3.896 12 N -0.469 5.469 13 C 0.171 3.829 14 C -0.156 4.156 15 C -0.133 4.133 16 C 0.027 3.973 17 C -0.472 4.472 18 H 0.087 0.913 19 C 0.034 3.966 20 N -0.826 5.826 21 Si 0.982 3.018 22 H -0.263 1.263 23 H -0.269 1.269 24 H -0.256 1.256 25 C -0.002 4.002 26 C -0.062 4.062 27 N -0.501 5.501 28 C 0.060 3.940 29 C -0.091 4.091 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.134 0.866 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.345 0.655 38 H 0.039 0.961 39 H 0.057 0.943 40 H 0.121 0.879 41 H 0.116 0.884 42 H 0.289 0.711 43 H 0.061 0.939 44 H 0.055 0.945 45 H 0.065 0.935 46 H 0.040 0.960 47 H 0.090 0.910 48 H 0.071 0.929 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.184 -9.233 -8.971 19.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.269 6.269 3 C 0.324 3.676 4 O -0.418 6.418 5 C -0.077 4.077 6 C -0.173 4.173 7 C -0.093 4.093 8 N -0.302 5.302 9 C -0.006 4.006 10 H 0.106 0.894 11 C -0.024 4.024 12 N -0.190 5.190 13 C -0.060 4.060 14 C -0.178 4.178 15 C -0.160 4.160 16 C 0.023 3.977 17 C -0.502 4.502 18 H 0.105 0.895 19 C -0.181 4.181 20 N -0.452 5.452 21 Si 0.803 3.197 22 H -0.188 1.188 23 H -0.194 1.194 24 H -0.180 1.180 25 C -0.143 4.143 26 C -0.120 4.120 27 N -0.214 5.214 28 C -0.066 4.066 29 C -0.129 4.129 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.152 0.848 33 H 0.107 0.893 34 H 0.116 0.884 35 H 0.107 0.893 36 H 0.093 0.907 37 H 0.162 0.838 38 H 0.058 0.942 39 H 0.076 0.924 40 H 0.139 0.861 41 H 0.134 0.866 42 H 0.100 0.900 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.084 0.916 46 H 0.058 0.942 47 H 0.108 0.892 48 H 0.089 0.911 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -14.567 -7.960 -9.192 18.975 hybrid contribution 0.587 -0.881 1.009 1.462 sum -13.980 -8.842 -8.184 18.455 Atomic orbital electron populations 1.23591 0.74632 1.05863 1.02549 1.86501 1.24983 1.32109 1.83352 1.23623 0.91454 0.81541 0.70999 1.90650 1.67435 1.37204 1.46481 1.21541 0.87082 0.99394 0.99690 1.22867 1.03170 0.99341 0.91927 1.22951 1.02262 0.87385 0.96667 1.62928 1.25522 1.38142 1.03645 1.22513 0.95580 0.91335 0.91206 0.89376 1.21365 0.92642 0.98883 0.89558 1.59401 1.15793 1.10044 1.33718 1.19182 0.89208 1.02729 0.94840 1.21002 0.95950 1.03410 0.97441 1.21324 0.93993 0.99479 1.01162 1.18623 0.95025 0.91470 0.92622 1.19702 0.94536 1.41684 0.94264 0.89476 1.26784 1.04757 0.91234 0.95311 1.69876 1.38714 1.35411 1.01159 0.85194 0.76394 0.79413 0.78723 1.18823 1.19357 1.18013 1.21304 0.89968 1.03321 0.99703 1.20208 0.97887 0.96992 0.96877 1.66868 1.07113 1.16825 1.30626 1.21984 0.96063 0.86869 1.01707 1.20727 0.94676 1.01432 0.96036 0.92168 0.91746 0.84824 0.89269 0.88401 0.89291 0.90747 0.83761 0.94240 0.92392 0.86093 0.86647 0.90039 0.92061 0.92570 0.91595 0.94206 0.89218 0.91062 0.87310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 113.37 1.20 1.53 16 2 O -0.35 -6.58 10.30 -51.43 -0.53 -7.11 16 3 C 0.48 11.08 6.23 71.23 0.44 11.53 16 4 O -0.53 -14.67 14.52 21.94 0.32 -14.35 16 5 C -0.07 -1.72 0.61 -52.79 -0.03 -1.75 16 6 C -0.13 -2.62 5.44 31.32 0.17 -2.45 16 7 C 0.04 0.78 6.75 86.52 0.58 1.37 16 8 N -0.67 -17.70 7.09 -478.59 -3.40 -21.09 16 9 C 0.10 3.04 3.15 44.84 0.14 3.18 16 10 H 0.09 2.86 7.65 -2.39 -0.02 2.84 16 11 C 0.10 3.67 3.88 86.39 0.34 4.00 16 12 N -0.47 -17.42 4.69 -705.77 -3.31 -20.73 16 13 C 0.17 7.75 6.38 133.32 0.85 8.60 16 14 C -0.16 -7.19 9.07 22.23 0.20 -6.99 16 15 C -0.13 -6.85 8.73 22.64 0.20 -6.65 16 16 C 0.03 1.44 5.58 -21.18 -0.12 1.32 16 17 C -0.47 -24.12 8.14 23.39 0.19 -23.93 16 18 H 0.09 4.22 6.86 -2.91 -0.02 4.20 16 19 C 0.03 1.65 5.19 85.23 0.44 2.09 16 20 N -0.83 -41.77 10.95 21.82 0.24 -41.53 16 21 Si 0.98 36.55 29.59 68.60 2.03 38.58 16 22 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 23 H -0.27 -9.61 7.11 99.48 0.71 -8.91 16 24 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 25 C 0.00 -0.10 6.86 43.23 0.30 0.20 16 26 C -0.06 -2.62 9.58 71.24 0.68 -1.93 16 27 N -0.50 -24.25 8.50 -179.36 -1.52 -25.77 16 28 C 0.06 1.74 5.11 85.59 0.44 2.18 16 29 C -0.09 -2.06 4.53 29.39 0.13 -1.93 16 30 H 0.06 0.82 8.13 -2.39 -0.02 0.80 16 31 H 0.06 0.80 8.13 -2.38 -0.02 0.78 16 32 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.09 1.79 6.45 -2.39 -0.02 1.78 16 34 H 0.10 1.53 7.73 -2.39 -0.02 1.51 16 35 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 36 H 0.07 1.75 7.57 -2.39 -0.02 1.73 16 37 H 0.35 8.66 7.78 -89.70 -0.70 7.96 16 38 H 0.04 1.44 6.38 -2.39 -0.02 1.43 16 39 H 0.06 2.42 7.60 -2.39 -0.02 2.40 16 40 H 0.12 4.91 7.20 -2.91 -0.02 4.89 16 41 H 0.12 6.09 6.26 -2.91 -0.02 6.07 16 42 H 0.29 13.24 8.30 -92.71 -0.77 12.47 16 43 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 44 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 45 H 0.07 2.75 6.76 -2.39 -0.02 2.73 16 46 H 0.04 1.15 6.63 -2.39 -0.02 1.14 16 47 H 0.09 2.56 6.65 -2.38 -0.02 2.54 16 48 H 0.07 1.72 8.12 -2.39 -0.02 1.70 16 49 H 0.11 1.90 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -62.59 377.63 0.27 -62.33 By element: Atomic # 1 Polarization: 39.04 SS G_CDS: 0.29 Total: 39.32 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: 6.15 Total: -9.65 kcal Atomic # 7 Polarization: -101.13 SS G_CDS: -7.99 Total: -109.12 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.21 Total: -21.46 kcal Atomic # 14 Polarization: 36.55 SS G_CDS: 2.03 Total: 38.58 kcal Total: -62.59 0.27 -62.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158642344.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.072 kcal (2) G-P(sol) polarization free energy of solvation -62.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds