Wall clock time and date at job start Wed Apr 1 2020 04:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50704 * 119.99775 * 2 1 4 4 O 1.45199 * 109.47011 * 134.99927 * 3 2 1 5 5 C 1.34637 * 116.99584 * 180.02562 * 4 3 2 6 6 O 1.21509 * 120.00438 * 359.97438 * 5 4 3 7 7 N 1.34781 * 119.99713 * 180.02562 * 5 4 3 8 8 C 1.46506 * 119.99807 * 179.72268 * 7 5 4 9 9 H 1.09004 * 109.50161 * 35.27784 * 8 7 5 10 10 C 1.53106 * 109.50286 * 275.19362 * 8 7 5 11 11 C 1.53123 * 109.15924 * 182.40584 * 10 8 7 12 12 C 1.53034 * 109.27992 * 57.65671 * 11 10 8 13 13 N 1.46843 * 109.52172 * 300.82119 * 12 11 10 14 14 C 1.38366 * 111.00177 * 185.83711 * 13 12 11 15 15 C 1.39715 * 119.42771 * 55.77147 * 14 13 12 16 16 C 1.36568 * 119.48999 * 179.76233 * 15 14 13 17 17 C 1.41323 * 118.40785 * 0.50675 * 16 15 14 18 18 C 1.41203 * 120.56738 * 179.76620 * 17 16 15 19 19 H 1.07999 * 119.99624 * 149.66179 * 18 17 16 20 20 C 1.39870 * 120.00038 * 329.65977 * 18 17 16 21 21 N 1.30892 * 120.00070 * 162.35473 * 20 18 17 22 22 Si 1.86799 * 119.99816 * 342.35120 * 20 18 17 23 23 H 1.48502 * 109.46938 * 95.36607 * 22 20 18 24 24 H 1.48503 * 109.47140 * 215.36127 * 22 20 18 25 25 H 1.48495 * 109.47389 * 335.36517 * 22 20 18 26 26 C 1.40749 * 118.86357 * 359.73686 * 17 16 15 27 27 C 1.50695 * 119.81928 * 180.02562 * 26 17 16 28 28 N 1.31490 * 120.36698 * 0.02562 * 26 17 16 29 29 C 1.46848 * 111.23392 * 61.72319 * 13 12 11 30 30 H 1.07991 * 120.00173 * 359.97438 * 1 2 3 31 31 H 1.08004 * 119.99468 * 179.97438 * 1 2 3 32 32 H 1.07998 * 120.00834 * 180.02562 * 2 1 3 33 33 H 1.09007 * 109.47124 * 14.99924 * 3 2 1 34 34 H 1.08994 * 109.47380 * 255.00338 * 3 2 1 35 35 H 0.96996 * 119.99945 * 359.97438 * 7 5 4 36 36 H 1.09004 * 109.52788 * 302.30738 * 10 8 7 37 37 H 1.08998 * 109.52728 * 62.50290 * 10 8 7 38 38 H 1.09004 * 109.49902 * 177.59545 * 11 10 8 39 39 H 1.08992 * 109.50178 * 297.71052 * 11 10 8 40 40 H 1.09004 * 109.46261 * 60.83439 * 12 11 10 41 41 H 1.08992 * 109.46522 * 180.80463 * 12 11 10 42 42 H 1.07992 * 120.25395 * 0.02562 * 15 14 13 43 43 H 1.07996 * 120.79155 * 180.22416 * 16 15 14 44 44 H 0.96999 * 120.00055 * 179.97438 * 21 20 18 45 45 H 1.08996 * 109.47148 * 269.97914 * 27 26 17 46 46 H 1.08998 * 109.47191 * 29.98060 * 27 26 17 47 47 H 1.09005 * 109.47178 * 149.98027 * 27 26 17 48 48 H 1.09001 * 109.50133 * 178.28236 * 29 13 12 49 49 H 1.08997 * 109.43028 * 58.30865 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 8 3.1437 1.2403 0.9680 5 6 3.9187 2.3342 1.0931 6 8 3.6987 3.3159 0.4117 7 7 4.9393 2.3398 1.9734 8 6 5.7864 3.5279 2.1052 9 1 5.1807 4.4237 1.9679 10 6 6.8897 3.4892 1.0444 11 6 7.8055 4.7027 1.2273 12 6 8.3842 4.6900 2.6440 13 7 7.2893 4.7288 3.6217 14 6 7.7790 4.8499 4.9101 15 6 8.6254 5.9159 5.2254 16 6 9.1055 6.0393 6.4979 17 6 8.7328 5.0681 7.4544 18 6 9.2068 5.1487 8.7821 19 1 8.6049 4.7687 9.5943 20 6 10.4557 5.7207 9.0452 21 7 10.7537 6.1126 10.2580 22 14 11.6986 5.9252 7.6658 23 1 11.5935 7.2958 7.1039 24 1 13.0685 5.7123 8.1982 25 1 11.4221 4.9302 6.5987 26 6 7.8804 4.0193 7.0611 27 6 7.4688 2.9722 8.0637 28 7 7.4413 3.9481 5.8238 29 6 6.4228 3.5498 3.4969 30 1 -0.5400 0.9352 0.0004 31 1 -0.5399 -0.9354 -0.0004 32 1 1.8501 -0.9352 -0.0004 33 1 1.3854 2.1162 0.2660 34 1 2.4754 1.4869 -0.9926 35 1 5.1152 1.5561 2.5171 36 1 7.4711 2.5740 1.1566 37 1 6.4415 3.5176 0.0513 38 1 8.6179 4.6581 0.5019 39 1 7.2321 5.6173 1.0766 40 1 8.9689 3.7816 2.7893 41 1 9.0255 5.5605 2.7822 42 1 8.8944 6.6390 4.4698 43 1 9.7582 6.8571 6.7656 44 1 11.6200 6.5090 10.4406 45 1 8.1865 2.1520 8.0478 46 1 7.4432 3.4134 9.0600 47 1 6.4789 2.5939 7.8082 48 1 5.6396 3.5920 4.2538 49 1 7.0166 2.6468 3.6389 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158915997.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:25 Heat of formation + Delta-G solvation = -25.239320 kcal Electronic energy + Delta-G solvation = -29883.403261 eV Core-core repulsion = 25810.773500 eV Total energy + Delta-G solvation = -4072.629761 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.70789 -39.76768 -38.22673 -36.87383 -35.03871 -34.36017 -33.89409 -32.72122 -31.84902 -30.36282 -29.72249 -27.26734 -26.83840 -25.41815 -23.47504 -23.17379 -21.63105 -21.27165 -20.47223 -20.27492 -19.93569 -18.60821 -17.56951 -17.25179 -16.81381 -16.57008 -15.66287 -15.42561 -15.18285 -14.75439 -14.50470 -14.37237 -14.21364 -13.98373 -13.63613 -13.42372 -13.13868 -13.06367 -13.00715 -12.81224 -12.53075 -12.48700 -11.94189 -11.70064 -11.56976 -11.38698 -11.31144 -11.21044 -11.12233 -10.90572 -10.89179 -10.83101 -10.66337 -10.44171 -10.42762 -9.91554 -9.90330 -9.57494 -9.24245 -8.79178 -8.51000 -8.27903 -7.25242 -7.07816 -4.52956 1.48796 2.23814 2.29660 2.54188 2.71664 2.98303 3.09066 3.18428 3.84275 3.92408 4.21704 4.46117 4.52412 4.65121 4.82940 4.87596 4.97800 5.01584 5.10790 5.13123 5.25195 5.36598 5.43441 5.52510 5.60466 5.73216 5.84769 5.88029 5.95685 6.01091 6.07087 6.07665 6.09587 6.14293 6.16036 6.23236 6.30284 6.37396 6.39234 6.54543 6.57278 6.67956 6.84979 6.98047 7.04531 7.29731 7.33550 7.50981 7.65247 7.98390 8.20315 8.22352 8.42521 8.61448 9.29946 9.93230 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020240 B = 0.002224 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.090269 B =12586.738965 C =13651.283255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.158 4.158 3 C 0.115 3.885 4 O -0.369 6.369 5 C 0.650 3.350 6 O -0.573 6.573 7 N -0.700 5.700 8 C 0.161 3.839 9 H 0.099 0.901 10 C -0.131 4.131 11 C -0.112 4.112 12 C 0.053 3.947 13 N -0.460 5.460 14 C 0.164 3.836 15 C -0.125 4.125 16 C -0.189 4.189 17 C 0.038 3.962 18 C -0.430 4.430 19 H 0.099 0.901 20 C 0.083 3.917 21 N -0.801 5.801 22 Si 0.909 3.091 23 H -0.269 1.269 24 H -0.288 1.288 25 H -0.248 1.248 26 C 0.043 3.957 27 C -0.072 4.072 28 N -0.484 5.484 29 C 0.071 3.929 30 H 0.101 0.899 31 H 0.109 0.891 32 H 0.120 0.880 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.407 0.593 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.036 0.964 41 H 0.080 0.920 42 H 0.107 0.893 43 H 0.111 0.889 44 H 0.287 0.713 45 H 0.055 0.945 46 H 0.069 0.931 47 H 0.049 0.951 48 H 0.089 0.911 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.325 -8.702 -16.737 21.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.177 4.177 3 C 0.040 3.960 4 O -0.284 6.284 5 C 0.402 3.598 6 O -0.462 6.462 7 N -0.358 5.358 8 C 0.057 3.943 9 H 0.117 0.883 10 C -0.170 4.170 11 C -0.150 4.150 12 C -0.074 4.074 13 N -0.180 5.180 14 C -0.064 4.064 15 C -0.148 4.148 16 C -0.215 4.215 17 C 0.033 3.967 18 C -0.459 4.459 19 H 0.116 0.884 20 C -0.137 4.137 21 N -0.425 5.425 22 Si 0.735 3.265 23 H -0.195 1.195 24 H -0.215 1.215 25 H -0.171 1.171 26 C -0.101 4.101 27 C -0.130 4.130 28 N -0.197 5.197 29 C -0.058 4.058 30 H 0.119 0.881 31 H 0.127 0.873 32 H 0.138 0.862 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.242 0.758 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.054 0.946 41 H 0.099 0.901 42 H 0.125 0.875 43 H 0.128 0.872 44 H 0.097 0.903 45 H 0.074 0.926 46 H 0.088 0.912 47 H 0.068 0.932 48 H 0.108 0.892 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.179 -8.389 -17.265 21.727 hybrid contribution 1.723 0.010 0.116 1.727 sum -8.456 -8.379 -17.149 20.876 Atomic orbital electron populations 1.23915 0.95392 1.02706 0.98547 1.22705 0.95684 0.97761 1.01507 1.21946 0.86161 0.96581 0.91275 1.86246 1.42812 1.39513 1.59808 1.18059 0.79760 0.81416 0.80556 1.90998 1.72975 1.34537 1.47646 1.44716 1.30218 1.19425 1.41449 1.21102 0.90765 0.86845 0.95559 0.88320 1.22013 0.96832 0.98916 0.99263 1.21548 0.98954 0.98579 0.95963 1.22313 0.92490 1.01417 0.91142 1.59098 1.18242 1.38193 1.02448 1.18719 1.02806 0.95828 0.89082 1.20719 0.99288 0.97899 0.96852 1.21012 1.05917 1.00403 0.94176 1.18391 0.93576 0.90919 0.93840 1.19403 1.01943 1.32207 0.92383 0.88355 1.26154 0.99691 0.91183 0.96660 1.69705 1.23005 1.27866 1.21927 0.86342 0.78211 0.80324 0.81601 1.19473 1.21475 1.17104 1.20911 1.01986 0.96728 0.90484 1.20291 0.99478 0.96109 0.97119 1.66756 1.23912 1.26045 1.02953 1.21896 0.97396 0.92233 0.94258 0.88084 0.87317 0.86166 0.90555 0.90182 0.75842 0.91904 0.91347 0.91078 0.90689 0.94561 0.90140 0.87546 0.87154 0.90263 0.92637 0.91215 0.93185 0.89237 0.93590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.98 14.31 29.02 0.42 -0.57 16 2 C -0.16 -1.14 9.90 -36.02 -0.36 -1.50 16 3 C 0.11 1.07 5.89 36.01 0.21 1.28 16 4 O -0.37 -4.28 10.25 -40.32 -0.41 -4.70 16 5 C 0.65 8.68 8.71 54.06 0.47 9.15 16 6 O -0.57 -9.19 15.80 -19.28 -0.30 -9.49 16 7 N -0.70 -8.39 5.09 -58.65 -0.30 -8.69 16 8 C 0.16 2.13 2.61 -67.85 -0.18 1.95 16 9 H 0.10 1.49 7.58 -51.93 -0.39 1.10 16 10 C -0.13 -1.57 5.58 -26.61 -0.15 -1.72 16 11 C -0.11 -1.32 6.09 -26.65 -0.16 -1.48 16 12 C 0.05 0.78 5.24 -3.84 -0.02 0.76 16 13 N -0.46 -7.92 4.66 -173.16 -0.81 -8.72 16 14 C 0.16 3.40 6.41 -155.13 -0.99 2.40 16 15 C -0.13 -2.65 9.09 -39.63 -0.36 -3.01 16 16 C -0.19 -4.38 7.21 -39.01 -0.28 -4.66 16 17 C 0.04 0.92 5.10 -106.65 -0.54 0.38 16 18 C -0.43 -10.89 8.91 -37.85 -0.34 -11.22 16 19 H 0.10 2.56 6.55 -52.49 -0.34 2.22 16 20 C 0.08 2.05 5.42 -17.34 -0.09 1.96 16 21 N -0.80 -20.26 13.93 55.54 0.77 -19.48 16 22 Si 0.91 19.76 24.53 -169.99 -4.17 15.59 16 23 H -0.27 -5.65 6.71 56.52 0.38 -5.28 16 24 H -0.29 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.25 -5.57 6.85 56.52 0.39 -5.19 16 26 C 0.04 0.98 6.86 -81.79 -0.56 0.42 16 27 C -0.07 -1.42 9.79 36.00 0.35 -1.07 16 28 N -0.48 -10.59 8.53 -8.05 -0.07 -10.66 16 29 C 0.07 1.08 4.11 -3.83 -0.02 1.07 16 30 H 0.10 0.53 7.90 -52.49 -0.41 0.12 16 31 H 0.11 0.47 8.06 -52.48 -0.42 0.05 16 32 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 33 H 0.08 0.71 7.86 -51.93 -0.41 0.30 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.41 4.11 8.71 -40.82 -0.36 3.75 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 1.16 6.63 -51.93 -0.34 0.82 16 42 H 0.11 1.98 7.11 -52.49 -0.37 1.60 16 43 H 0.11 2.51 4.84 -52.49 -0.25 2.26 16 44 H 0.29 6.58 8.30 -40.82 -0.34 6.24 16 45 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 46 H 0.07 1.37 6.31 -51.93 -0.33 1.04 16 47 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.09 1.52 7.70 -51.93 -0.40 1.12 16 49 H 0.05 0.72 8.10 -51.93 -0.42 0.30 16 LS Contribution 393.50 15.07 5.93 5.93 Total: -1.00 -28.59 393.50 -9.39 -37.99 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -7.43 Total: 8.11 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -2.60 Total: -5.87 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: -0.40 Total: -47.56 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.72 Total: -14.19 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -4.17 Total: 15.59 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -28.59 -9.39 -37.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158915997.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.746 kcal (2) G-P(sol) polarization free energy of solvation -28.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds