Wall clock time and date at job start Wed Apr 1 2020 04:18:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 N 1.31482 * 119.82151 * 2 1
4 4 C 1.32733 * 121.73461 * 180.02562 * 3 2 1
5 5 N 1.38370 * 119.43214 * 179.97438 * 4 3 2
6 6 C 1.46905 * 110.99946 * 124.32391 * 5 4 3
7 7 C 1.53245 * 109.33920 * 172.74792 * 6 5 4
8 8 N 1.47081 * 108.52052 * 53.83350 * 7 6 5
9 9 C 1.34781 * 120.88059 * 128.83348 * 8 7 6
10 10 O 1.21279 * 119.99654 * 179.97438 * 9 8 7
11 11 C 1.50700 * 120.00084 * 359.97438 * 9 8 7
12 12 H 1.09004 * 109.87009 * 303.99395 * 11 9 8
13 13 C 1.54103 * 109.87689 * 64.99913 * 11 9 8
14 14 C 1.54809 * 104.18731 * 121.45595 * 13 11 9
15 15 C 1.54991 * 102.09246 * 20.87744 * 14 13 11
16 16 O 1.43737 * 109.87868 * 182.83039 * 11 9 8
17 17 C 1.47078 * 118.23616 * 308.81356 * 8 7 6
18 18 C 1.46898 * 110.99856 * 0.02957 * 5 4 3
19 19 C 1.39708 * 121.14024 * 0.02562 * 4 3 2
20 20 C 1.36560 * 119.49017 * 359.97438 * 19 4 3
21 21 C 1.40756 * 119.80970 * 180.02562 * 2 1 3
22 22 C 1.41200 * 120.57358 * 359.95953 * 21 2 1
23 23 H 1.07995 * 119.99719 * 24.88345 * 22 21 2
24 24 C 1.39871 * 119.99863 * 204.88259 * 22 21 2
25 25 N 1.30898 * 120.00187 * 14.70540 * 24 22 21
26 26 Si 1.86800 * 119.99893 * 194.70044 * 24 22 21
27 27 H 1.48501 * 109.46776 * 60.00359 * 26 24 22
28 28 H 1.48506 * 109.47011 * 180.02562 * 26 24 22
29 29 H 1.48496 * 109.47320 * 300.00569 * 26 24 22
30 30 H 1.08999 * 109.46675 * 89.99558 * 1 2 3
31 31 H 1.08996 * 109.47325 * 209.99798 * 1 2 3
32 32 H 1.09000 * 109.46576 * 330.00552 * 1 2 3
33 33 H 1.08998 * 109.49259 * 292.71007 * 6 5 4
34 34 H 1.09001 * 109.49080 * 52.78903 * 6 5 4
35 35 H 1.08996 * 109.62808 * 294.12157 * 7 6 5
36 36 H 1.08994 * 109.78559 * 173.63381 * 7 6 5
37 37 H 1.09001 * 110.48462 * 240.12955 * 13 11 9
38 38 H 1.08999 * 110.48963 * 2.77425 * 13 11 9
39 39 H 1.08998 * 110.90574 * 139.07563 * 14 13 11
40 40 H 1.08996 * 110.90405 * 262.64491 * 14 13 11
41 41 H 1.09002 * 110.62026 * 81.48190 * 15 14 13
42 42 H 1.08998 * 110.62091 * 204.32160 * 15 14 13
43 43 H 1.08995 * 109.62883 * 291.47795 * 17 8 7
44 44 H 1.09000 * 109.78951 * 170.99260 * 17 8 7
45 45 H 1.09003 * 109.48985 * 307.20570 * 18 5 4
46 46 H 1.09002 * 109.50039 * 67.26362 * 18 5 4
47 47 H 1.07995 * 120.25477 * 179.72384 * 19 4 3
48 48 H 1.08006 * 120.79466 * 179.97438 * 20 19 4
49 49 H 0.96997 * 120.00444 * 179.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.1609 1.1407 0.0000
4 6 3.4875 1.1850 -0.0005
5 7 4.1268 2.4122 -0.0010
6 6 5.0563 2.5220 1.1313
7 6 5.8726 3.8117 0.9945
8 7 4.9415 4.9401 0.8426
9 6 5.0473 6.0341 1.6227
10 8 4.2711 6.9555 1.4834
11 6 6.1301 6.1124 2.6679
12 1 6.0591 5.2570 3.3397
13 6 7.5133 6.1321 1.9889
14 6 8.1549 7.4551 2.4730
15 6 7.3388 7.7619 3.7545
16 8 6.0025 7.3349 3.4131
17 6 3.8921 4.8430 -0.1833
18 6 3.1538 3.5127 -0.0002
19 6 4.2495 0.0140 -0.0016
20 6 3.6198 -1.1977 -0.0016
21 6 2.2068 -1.2213 -0.0005
22 6 1.5090 -2.4488 -0.0002
23 1 0.5043 -2.4989 -0.3932
24 6 2.1190 -3.5999 0.5090
25 7 3.2011 -3.4990 1.2385
26 14 1.3893 -5.2812 0.1480
27 1 1.3671 -5.5063 -1.3197
28 1 2.2165 -6.3296 0.7976
29 1 0.0042 -5.3442 0.6794
30 1 -0.3632 0.0001 -1.0277
31 1 -0.3634 -0.8900 0.5138
32 1 -0.3632 0.8901 0.5138
33 1 4.4924 2.5455 2.0638
34 1 5.7290 1.6643 1.1341
35 1 6.5155 3.7468 0.1167
36 1 6.4831 3.9582 1.8855
37 1 8.1091 5.2784 2.3122
38 1 7.4059 6.1346 0.9042
39 1 9.2096 7.3126 2.7083
40 1 8.0267 8.2437 1.7315
41 1 7.7209 7.1887 4.5992
42 1 7.3586 8.8289 3.9759
43 1 4.3446 4.8772 -1.1743
44 1 3.1902 5.6696 -0.0726
45 1 2.4467 3.3736 -0.8180
46 1 2.6160 3.5222 0.9479
47 1 5.3281 0.0668 -0.0065
48 1 4.1882 -2.1162 -0.0029
49 1 3.6240 -4.2972 1.5920
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001163653503.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:18:51
Heat of formation + Delta-G solvation = -31.442193 kcal
Electronic energy + Delta-G solvation = -30564.325759 eV
Core-core repulsion = 26491.427022 eV
Total energy + Delta-G solvation = -4072.898737 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 1.02 seconds
Orbital eigenvalues (eV)
-40.77266 -39.47738 -38.50980 -37.17985 -34.86865 -33.65250 -32.51671 -31.73251
-31.02206 -30.52488 -29.59084 -27.26884 -26.98302 -24.56016 -23.81250 -23.42767
-22.16153 -21.56064 -20.62674 -20.18938 -19.13261 -17.64530 -17.33723 -16.73441
-16.63821 -15.98015 -15.51204 -15.31949 -15.00209 -14.93157 -14.65049 -14.44185
-14.14362 -14.00406 -13.68978 -13.48090 -13.16007 -12.84023 -12.64108 -12.38339
-12.11296 -12.06463 -11.96177 -11.69721 -11.58989 -11.56099 -11.42540 -11.33733
-11.24396 -11.07426 -10.99481 -10.91717 -10.89003 -10.63664 -10.34575 -9.88048
-9.50949 -9.49304 -8.89299 -8.52403 -8.27574 -8.10057 -7.13722 -6.85748
-4.44951 2.49598 2.52470 2.72565 2.88210 2.97848 3.00235 3.09383
3.65581 3.80542 4.08095 4.22206 4.28667 4.45096 4.57372 4.60863
4.84009 4.91187 4.98291 5.09012 5.21916 5.24037 5.32303 5.36743
5.39562 5.47869 5.53530 5.55296 5.65797 5.67040 5.75780 5.83614
6.01670 6.11538 6.25898 6.35571 6.36710 6.41858 6.52589 6.61152
6.66152 6.72646 6.90025 6.99316 7.22500 7.28753 7.35166 7.36535
7.73796 7.93620 8.09437 8.12387 8.40645 8.63525 8.70858 9.53482
10.01924
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.023159 B = 0.002266 C = 0.002154
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1208.756728 B =12352.343653 C =12995.877712
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 C 0.018 3.982
3 N -0.491 5.491
4 C 0.163 3.837
5 N -0.463 5.463
6 C 0.042 3.958
7 C 0.110 3.890
8 N -0.609 5.609
9 C 0.515 3.485
10 O -0.526 6.526
11 C 0.061 3.939
12 H 0.095 0.905
13 C -0.147 4.147
14 C -0.154 4.154
15 C 0.043 3.957
16 O -0.348 6.348
17 C 0.115 3.885
18 C 0.061 3.939
19 C -0.151 4.151
20 C -0.116 4.116
21 C 0.058 3.942
22 C -0.443 4.443
23 H 0.084 0.916
24 C 0.072 3.928
25 N -0.795 5.795
26 Si 0.912 3.088
27 H -0.263 1.263
28 H -0.278 1.278
29 H -0.264 1.264
30 H 0.047 0.953
31 H 0.067 0.933
32 H 0.047 0.953
33 H 0.039 0.961
34 H 0.091 0.909
35 H 0.080 0.920
36 H 0.084 0.916
37 H 0.089 0.911
38 H 0.084 0.916
39 H 0.085 0.915
40 H 0.079 0.921
41 H 0.064 0.936
42 H 0.096 0.904
43 H 0.073 0.927
44 H 0.093 0.907
45 H 0.095 0.905
46 H 0.042 0.958
47 H 0.100 0.900
48 H 0.130 0.870
49 H 0.283 0.717
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.004 11.632 2.309 16.178
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 C -0.124 4.124
3 N -0.203 5.203
4 C -0.067 4.067
5 N -0.183 5.183
6 C -0.086 4.086
7 C -0.013 4.013
8 N -0.344 5.344
9 C 0.301 3.699
10 O -0.401 6.401
11 C -0.001 4.001
12 H 0.112 0.888
13 C -0.185 4.185
14 C -0.192 4.192
15 C -0.033 4.033
16 O -0.266 6.266
17 C -0.007 4.007
18 C -0.067 4.067
19 C -0.174 4.174
20 C -0.142 4.142
21 C 0.053 3.947
22 C -0.473 4.473
23 H 0.102 0.898
24 C -0.146 4.146
25 N -0.420 5.420
26 Si 0.737 3.263
27 H -0.187 1.187
28 H -0.203 1.203
29 H -0.188 1.188
30 H 0.066 0.934
31 H 0.086 0.914
32 H 0.066 0.934
33 H 0.057 0.943
34 H 0.110 0.890
35 H 0.098 0.902
36 H 0.102 0.898
37 H 0.107 0.893
38 H 0.103 0.897
39 H 0.103 0.897
40 H 0.098 0.902
41 H 0.082 0.918
42 H 0.115 0.885
43 H 0.091 0.909
44 H 0.111 0.889
45 H 0.113 0.887
46 H 0.061 0.939
47 H 0.118 0.882
48 H 0.148 0.852
49 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges 10.378 12.935 2.017 16.706
hybrid contribution 0.138 -1.984 0.572 2.069
sum 10.516 10.951 2.588 15.401
Atomic orbital electron populations
1.20245 0.91159 1.01105 1.00303 1.20836 0.94880 0.87613 1.09047
1.66676 1.08256 1.31160 1.14221 1.18782 0.88392 0.88338 1.11173
1.59340 1.18359 1.01169 1.39462 1.22605 0.96096 0.97296 0.92612
1.22000 0.91715 0.85156 1.02402 1.48161 1.32836 1.17041 1.36390
1.20400 0.85443 0.82175 0.81835 1.90698 1.43117 1.37168 1.69149
1.22631 0.94226 0.90133 0.93084 0.88795 1.23014 0.94083 0.99260
1.02162 1.23148 1.00329 0.97446 0.98231 1.23639 0.82213 1.01065
0.96424 1.89019 1.26322 1.39049 1.72168 1.21882 0.89963 0.98499
0.90399 1.22149 0.93587 0.88282 1.02700 1.20808 0.98295 0.92533
1.05729 1.21367 0.94839 0.96485 1.01538 1.18290 0.92394 0.93088
0.90941 1.19487 1.01419 0.91888 1.34496 0.89818 1.25967 0.94375
1.01655 0.92560 1.69790 1.17083 1.31922 1.23210 0.86284 0.79912
0.80195 0.79941 1.18715 1.20275 1.18840 0.93387 0.91420 0.93418
0.94265 0.89045 0.90167 0.89762 0.89283 0.89733 0.89686 0.90209
0.91793 0.88547 0.90875 0.88888 0.88712 0.93949 0.88213 0.85191
0.90610
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -1.45 9.58 36.01 0.34 -1.11 16
2 C 0.02 0.43 6.86 -81.79 -0.56 -0.13 16
3 N -0.49 -11.49 8.52 -8.05 -0.07 -11.56 16
4 C 0.16 3.56 6.41 -155.13 -0.99 2.57 16
5 N -0.46 -8.29 4.63 -172.81 -0.80 -9.09 16
6 C 0.04 0.62 5.41 -3.69 -0.02 0.60 16
7 C 0.11 1.23 5.74 -3.60 -0.02 1.21 16
8 N -0.61 -8.19 3.01 -172.46 -0.52 -8.70 16
9 C 0.51 7.53 6.90 -10.98 -0.08 7.45 16
10 O -0.53 -9.84 15.98 -14.02 -0.22 -10.06 16
11 C 0.06 0.68 2.96 -27.31 -0.08 0.60 16
12 H 0.09 0.92 7.47 -51.93 -0.39 0.53 16
13 C -0.15 -1.14 5.10 -25.20 -0.13 -1.27 16
14 C -0.15 -1.05 7.15 -24.73 -0.18 -1.23 16
15 C 0.04 0.35 7.72 38.21 0.29 0.65 16
16 O -0.35 -4.52 10.74 -54.81 -0.59 -5.11 16
17 C 0.11 1.66 6.59 -3.60 -0.02 1.63 16
18 C 0.06 1.05 4.80 -3.70 -0.02 1.03 16
19 C -0.15 -3.34 9.07 -39.64 -0.36 -3.70 16
20 C -0.12 -2.84 8.73 -39.01 -0.34 -3.18 16
21 C 0.06 1.45 5.59 -106.65 -0.60 0.86 16
22 C -0.44 -10.92 8.16 -37.85 -0.31 -11.23 16
23 H 0.08 1.96 6.83 -52.49 -0.36 1.60 16
24 C 0.07 1.70 5.22 -17.34 -0.09 1.61 16
25 N -0.79 -19.20 10.83 55.54 0.60 -18.59 16
26 Si 0.91 17.57 29.58 -169.99 -5.03 12.54 16
27 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16
28 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16
29 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16
30 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16
31 H 0.07 1.37 6.75 -51.93 -0.35 1.02 16
32 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16
33 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16
34 H 0.09 1.29 6.59 -51.93 -0.34 0.94 16
35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16
36 H 0.08 0.70 5.00 -51.93 -0.26 0.44 16
37 H 0.09 0.48 7.77 -51.93 -0.40 0.08 16
38 H 0.08 0.70 7.51 -51.93 -0.39 0.31 16
39 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16
40 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16
41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16
42 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16
43 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16
44 H 0.09 1.40 7.07 -51.93 -0.37 1.03 16
45 H 0.09 1.72 7.63 -51.93 -0.40 1.32 16
46 H 0.04 0.81 8.13 -51.93 -0.42 0.38 16
47 H 0.10 1.93 7.12 -52.49 -0.37 1.56 16
48 H 0.13 3.24 6.17 -52.48 -0.32 2.91 16
49 H 0.28 6.24 8.30 -40.82 -0.34 5.90 16
LS Contribution 382.22 15.07 5.76 5.76
Total: -1.00 -30.67 382.22 -11.34 -42.01
By element:
Atomic # 1 Polarization: 13.77 SS G_CDS: -7.32 Total: 6.45 kcal
Atomic # 6 Polarization: -0.49 SS G_CDS: -3.15 Total: -3.64 kcal
Atomic # 7 Polarization: -47.15 SS G_CDS: -0.79 Total: -47.94 kcal
Atomic # 8 Polarization: -14.36 SS G_CDS: -0.81 Total: -15.18 kcal
Atomic # 14 Polarization: 17.57 SS G_CDS: -5.03 Total: 12.54 kcal
Total LS contribution 5.76 Total: 5.76 kcal
Total: -30.67 -11.34 -42.01 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001163653503.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.564 kcal
(2) G-P(sol) polarization free energy of solvation -30.668 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.104 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.338 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.006 kcal
(6) G-S(sol) free energy of system = (1) + (5) -31.442 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.02 seconds