Wall clock time and date at job start Wed Apr 1 2020 04:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37913 * 119.57639 * 2 1 4 4 C 1.39455 * 119.06811 * 180.02562 * 3 2 1 5 5 N 1.39160 * 120.86965 * 180.02562 * 4 3 2 6 6 C 1.48607 * 111.00116 * 59.87114 * 5 4 3 7 7 C 1.54508 * 104.60958 * 201.22272 * 6 5 4 8 8 C 1.53776 * 104.88272 * 23.77644 * 7 6 5 9 9 C 1.48680 * 110.99860 * 304.36272 * 5 4 3 10 10 C 1.52426 * 110.31558 * 240.75201 * 8 7 6 11 11 N 1.46201 * 109.95180 * 285.74439 * 10 8 7 12 12 C 1.46499 * 118.78142 * 162.48598 * 11 10 8 13 13 C 1.52999 * 109.46948 * 269.97362 * 12 11 10 14 14 C 1.50706 * 109.46985 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99772 * 359.97438 * 14 13 12 16 16 C 1.37872 * 119.99816 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00083 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99880 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46887 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47323 * 119.99719 * 18 16 14 21 21 H 1.48501 * 109.47063 * 239.99662 * 18 16 14 22 22 C 1.33844 * 122.44378 * 342.45691 * 11 10 8 23 23 O 1.21285 * 118.69502 * 182.69294 * 22 11 10 24 24 C 1.50306 * 122.61030 * 2.41306 * 22 11 10 25 25 O 1.42567 * 110.26894 * 118.88549 * 8 7 6 26 26 C 1.39507 * 118.26575 * 0.26805 * 4 3 2 27 27 C 1.37880 * 119.06478 * 359.44369 * 26 4 3 28 28 N 1.31976 * 119.57807 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.47177 * 90.00254 * 1 2 3 30 30 H 1.09001 * 109.47291 * 209.99773 * 1 2 3 31 31 H 1.08993 * 109.47300 * 329.99784 * 1 2 3 32 32 H 1.08006 * 120.46628 * 359.97436 * 3 2 1 33 33 H 1.09000 * 110.41231 * 82.43875 * 6 5 4 34 34 H 1.09002 * 110.40579 * 320.00048 * 6 5 4 35 35 H 1.08998 * 110.34921 * 264.92424 * 7 6 5 36 36 H 1.08997 * 110.35470 * 142.62948 * 7 6 5 37 37 H 1.08991 * 110.43080 * 39.87332 * 9 5 4 38 38 H 1.08998 * 110.42611 * 277.37858 * 9 5 4 39 39 H 1.09007 * 109.39291 * 45.88390 * 10 8 7 40 40 H 1.09003 * 109.39503 * 165.58682 * 10 8 7 41 41 H 1.08999 * 109.46606 * 29.97268 * 12 11 10 42 42 H 1.08993 * 109.47036 * 149.96829 * 12 11 10 43 43 H 1.08996 * 109.47295 * 300.00182 * 13 12 11 44 44 H 1.08997 * 109.47077 * 60.00252 * 13 12 11 45 45 H 0.97001 * 119.99986 * 180.02562 * 17 16 14 46 46 H 1.09004 * 109.39252 * 103.69824 * 24 22 11 47 47 H 1.08997 * 109.39743 * 223.51627 * 24 22 11 48 48 H 1.07989 * 120.46244 * 179.73005 * 26 4 3 49 49 H 1.07997 * 119.57167 * 180.29240 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1877 1.1994 0.0000 4 6 3.5822 1.1871 -0.0005 5 7 4.3068 2.3751 0.0000 6 6 3.9900 3.1916 1.2006 7 6 4.3986 4.6303 0.8124 8 6 4.3451 4.6550 -0.7243 9 6 3.9149 3.2387 -1.1451 10 6 5.7197 4.9811 -1.2965 11 7 6.0149 6.4005 -1.1073 12 6 7.4035 6.8533 -1.2204 13 6 8.0759 6.7840 0.1522 14 6 9.5047 7.2492 0.0357 15 1 9.8942 7.5625 -0.9217 16 6 10.3147 7.2738 1.1511 17 7 9.8405 6.8918 2.3167 18 14 12.0854 7.8511 1.0068 19 1 12.3711 8.2245 -0.4018 20 1 12.2945 9.0309 1.8842 21 1 12.9984 6.7565 1.4233 22 6 5.0635 7.3017 -0.8351 23 8 5.3775 8.4693 -0.7400 24 6 3.6204 6.9250 -0.6487 25 8 3.3882 5.6133 -1.1698 26 6 4.2319 -0.0475 -0.0068 27 6 3.4775 -1.2015 -0.0005 28 7 2.1584 -1.1478 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5138 32 1 1.6484 2.1352 -0.0004 33 1 4.5710 2.8495 2.0570 34 1 2.9235 3.1458 1.4208 35 1 5.4092 4.8442 1.1602 36 1 3.6933 5.3499 1.2280 37 1 2.8368 3.1988 -1.3002 38 1 4.4419 2.9339 -2.0493 39 1 6.4752 4.3834 -0.7864 40 1 5.7334 4.7473 -2.3610 41 1 7.9390 6.2116 -1.9202 42 1 7.4222 7.8811 -1.5827 43 1 7.5404 7.4255 0.8519 44 1 8.0573 5.7561 0.5144 45 1 10.4103 6.9095 3.1015 46 1 3.3765 6.9409 0.4136 47 1 2.9886 7.6397 -1.1760 48 1 5.3106 -0.0984 -0.0118 49 1 3.9720 -2.1616 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273582628.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:12 Heat of formation + Delta-G solvation = -22.100228 kcal Electronic energy + Delta-G solvation = -30861.400634 eV Core-core repulsion = 26788.906994 eV Total energy + Delta-G solvation = -4072.493639 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.45685 -40.50399 -38.80768 -37.11241 -35.48373 -33.46825 -33.09208 -32.72876 -30.40752 -29.96451 -29.43377 -27.89102 -27.38182 -25.88579 -24.54603 -23.98590 -22.53110 -21.84196 -21.05010 -20.47901 -18.41528 -17.97026 -17.07103 -16.98722 -16.71140 -16.13004 -15.98495 -15.70836 -15.26988 -14.99188 -14.83344 -14.53017 -14.45412 -14.29879 -14.09967 -13.59966 -13.53857 -13.19534 -13.04551 -12.75227 -12.64050 -12.62122 -12.46228 -12.33027 -12.18361 -11.90588 -11.67409 -11.52746 -11.29503 -11.03455 -10.93460 -10.71103 -10.30400 -9.94040 -9.90405 -9.83599 -9.73729 -9.33288 -9.24799 -9.08417 -9.00831 -8.38855 -8.13547 -6.04105 -4.06797 0.80065 0.85729 2.83375 3.06841 3.29708 3.30445 3.37664 3.40993 3.42121 3.67819 4.00064 4.22550 4.26441 4.40159 4.44263 4.45955 4.66210 4.72809 4.83970 4.88689 5.03518 5.08285 5.11374 5.18922 5.24122 5.25271 5.32572 5.33259 5.40107 5.43064 5.45076 5.51179 5.58683 5.63753 5.74187 5.77991 5.87019 5.97991 6.05108 6.12014 6.30013 6.50114 6.66655 6.81175 6.83616 6.89641 7.55041 7.66386 7.70129 7.88842 7.95315 8.31713 8.48051 8.99427 9.57283 11.07400 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013820 B = 0.002688 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.495414 B =10415.974495 C =11824.474916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.135 3.865 3 C -0.204 4.204 4 C 0.133 3.867 5 N -0.473 5.473 6 C 0.043 3.957 7 C -0.155 4.155 8 C 0.100 3.900 9 C 0.056 3.944 10 C 0.103 3.897 11 N -0.596 5.596 12 C 0.112 3.888 13 C 0.016 3.984 14 C -0.519 4.519 15 H 0.057 0.943 16 C 0.059 3.941 17 N -0.893 5.893 18 Si 0.894 3.106 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.480 3.520 23 O -0.540 6.540 24 C 0.049 3.951 25 O -0.364 6.364 26 C -0.152 4.152 27 C 0.109 3.891 28 N -0.491 5.491 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.133 0.867 33 H 0.093 0.907 34 H 0.054 0.946 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.077 0.923 43 H 0.020 0.980 44 H 0.016 0.984 45 H 0.260 0.740 46 H 0.088 0.912 47 H 0.128 0.872 48 H 0.144 0.856 49 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.884 -14.564 -5.055 24.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.003 4.003 3 C -0.226 4.226 4 C 0.030 3.970 5 N -0.195 5.195 6 C -0.082 4.082 7 C -0.193 4.193 8 C 0.060 3.940 9 C -0.070 4.070 10 C -0.021 4.021 11 N -0.329 5.329 12 C -0.009 4.009 13 C -0.022 4.022 14 C -0.558 4.558 15 H 0.075 0.925 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.722 3.278 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C 0.267 3.733 23 O -0.418 6.418 24 C -0.030 4.030 25 O -0.282 6.282 26 C -0.173 4.173 27 C -0.048 4.048 28 N -0.201 5.201 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.151 0.849 33 H 0.112 0.888 34 H 0.072 0.928 35 H 0.116 0.884 36 H 0.103 0.897 37 H 0.089 0.911 38 H 0.118 0.882 39 H 0.115 0.885 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.038 0.962 44 H 0.034 0.966 45 H 0.070 0.930 46 H 0.106 0.894 47 H 0.146 0.854 48 H 0.162 0.838 49 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -18.726 -14.926 -4.980 24.459 hybrid contribution 0.969 1.323 0.315 1.670 sum -17.757 -13.603 -4.665 22.850 Atomic orbital electron populations 1.20727 0.88866 1.03474 1.03151 1.21134 0.96975 0.87955 0.94228 1.22497 0.95287 0.99876 1.04925 1.19316 0.90148 0.92197 0.95313 1.63041 1.51185 1.01919 1.03370 1.23240 0.99990 0.91948 0.93068 1.23057 1.04880 0.96654 0.94723 1.22047 0.88797 0.89258 0.93915 1.23032 1.00895 0.88669 0.94419 1.21974 0.96002 0.82931 1.01211 1.47719 1.09303 1.06913 1.68933 1.21962 0.77441 1.00069 1.01425 1.19349 0.95011 0.97282 0.90553 1.21114 0.95887 1.43989 0.94812 0.92462 1.24990 0.98681 0.95292 0.95310 1.69975 1.36189 1.47799 0.99258 0.86504 0.84698 0.78399 0.78216 1.19667 1.20970 1.20998 1.20668 0.88393 0.86315 0.77932 1.90754 1.82285 1.17928 1.50823 1.22871 0.93812 0.84694 1.01640 1.88015 1.51141 1.17526 1.71548 1.22093 1.02230 0.91429 1.01527 1.22717 0.89136 0.98415 0.94544 1.67556 1.10244 1.29226 1.13106 0.90346 0.90387 0.90782 0.84882 0.88835 0.92752 0.88406 0.89686 0.91145 0.88178 0.88477 0.91143 0.91710 0.90504 0.96168 0.96600 0.93027 0.89387 0.85441 0.83808 0.82308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.69 10.17 36.01 0.37 -0.32 16 2 C 0.13 1.25 6.78 -82.65 -0.56 0.69 16 3 C -0.20 -1.85 7.76 -39.25 -0.30 -2.16 16 4 C 0.13 1.31 4.92 -83.61 -0.41 0.90 16 5 N -0.47 -4.88 5.40 -166.60 -0.90 -5.77 16 6 C 0.04 0.44 6.38 -2.09 -0.01 0.43 16 7 C -0.16 -1.83 5.66 -25.54 -0.14 -1.97 16 8 C 0.10 1.18 1.03 -90.05 -0.09 1.09 16 9 C 0.06 0.56 5.64 -2.38 -0.01 0.55 16 10 C 0.10 1.42 5.08 -4.50 -0.02 1.40 16 11 N -0.60 -10.56 2.80 -174.71 -0.49 -11.05 16 12 C 0.11 2.35 5.26 -4.04 -0.02 2.33 16 13 C 0.02 0.41 5.29 -27.88 -0.15 0.26 16 14 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 15 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 18 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 C 0.48 8.65 7.42 -11.59 -0.09 8.56 16 23 O -0.54 -12.04 16.34 5.55 0.09 -11.95 16 24 C 0.05 0.64 6.42 35.81 0.23 0.87 16 25 O -0.36 -4.47 10.35 -35.23 -0.36 -4.83 16 26 C -0.15 -1.40 10.06 -39.24 -0.39 -1.79 16 27 C 0.11 0.97 11.17 -17.61 -0.20 0.77 16 28 N -0.49 -5.09 10.27 -9.57 -0.10 -5.19 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.38 8.07 -51.93 -0.42 -0.04 16 32 H 0.13 1.06 6.90 -52.48 -0.36 0.70 16 33 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.05 0.49 6.83 -51.93 -0.35 0.14 16 35 H 0.10 1.41 7.62 -51.93 -0.40 1.02 16 36 H 0.08 0.94 6.16 -51.93 -0.32 0.62 16 37 H 0.07 0.66 6.49 -51.93 -0.34 0.32 16 38 H 0.10 0.93 7.70 -51.93 -0.40 0.53 16 39 H 0.10 1.42 7.97 -51.93 -0.41 1.00 16 40 H 0.07 0.87 7.93 -51.93 -0.41 0.46 16 41 H 0.06 1.25 8.04 -51.93 -0.42 0.83 16 42 H 0.08 1.75 7.22 -51.93 -0.37 1.38 16 43 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 46 H 0.09 1.02 6.50 -51.93 -0.34 0.69 16 47 H 0.13 1.42 8.14 -51.93 -0.42 1.00 16 48 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 49 H 0.16 0.98 8.06 -52.49 -0.42 0.55 16 LS Contribution 391.39 15.07 5.90 5.90 Total: -1.00 -34.10 391.39 -9.84 -43.94 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -7.47 Total: 0.04 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -2.22 Total: -1.77 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: -0.75 Total: -48.00 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -0.27 Total: -16.78 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.10 -9.84 -43.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273582628.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.844 kcal (2) G-P(sol) polarization free energy of solvation -34.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds