Wall clock time and date at job start Wed Apr 1 2020 04:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37913 * 119.57639 * 2 1 4 4 C 1.39455 * 119.06811 * 180.02562 * 3 2 1 5 5 N 1.39160 * 120.86965 * 180.02562 * 4 3 2 6 6 C 1.48607 * 111.00116 * 59.87114 * 5 4 3 7 7 C 1.54508 * 104.60958 * 201.22272 * 6 5 4 8 8 C 1.53776 * 104.88272 * 23.77644 * 7 6 5 9 9 C 1.48680 * 110.99860 * 304.36272 * 5 4 3 10 10 C 1.52426 * 110.31558 * 240.75201 * 8 7 6 11 11 N 1.46201 * 109.95180 * 285.74439 * 10 8 7 12 12 C 1.46499 * 118.78142 * 162.48598 * 11 10 8 13 13 C 1.52999 * 109.46948 * 269.97362 * 12 11 10 14 14 C 1.50706 * 109.46985 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99772 * 359.97438 * 14 13 12 16 16 C 1.37872 * 119.99816 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00083 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99880 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46887 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47323 * 119.99719 * 18 16 14 21 21 H 1.48501 * 109.47063 * 239.99662 * 18 16 14 22 22 C 1.33844 * 122.44378 * 342.45691 * 11 10 8 23 23 O 1.21285 * 118.69502 * 182.69294 * 22 11 10 24 24 C 1.50306 * 122.61030 * 2.41306 * 22 11 10 25 25 O 1.42567 * 110.26894 * 118.88549 * 8 7 6 26 26 C 1.39507 * 118.26575 * 0.26805 * 4 3 2 27 27 C 1.37880 * 119.06478 * 359.44369 * 26 4 3 28 28 N 1.31976 * 119.57807 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.47177 * 90.00254 * 1 2 3 30 30 H 1.09001 * 109.47291 * 209.99773 * 1 2 3 31 31 H 1.08993 * 109.47300 * 329.99784 * 1 2 3 32 32 H 1.08006 * 120.46628 * 359.97436 * 3 2 1 33 33 H 1.09000 * 110.41231 * 82.43875 * 6 5 4 34 34 H 1.09002 * 110.40579 * 320.00048 * 6 5 4 35 35 H 1.08998 * 110.34921 * 264.92424 * 7 6 5 36 36 H 1.08997 * 110.35470 * 142.62948 * 7 6 5 37 37 H 1.08991 * 110.43080 * 39.87332 * 9 5 4 38 38 H 1.08998 * 110.42611 * 277.37858 * 9 5 4 39 39 H 1.09007 * 109.39291 * 45.88390 * 10 8 7 40 40 H 1.09003 * 109.39503 * 165.58682 * 10 8 7 41 41 H 1.08999 * 109.46606 * 29.97268 * 12 11 10 42 42 H 1.08993 * 109.47036 * 149.96829 * 12 11 10 43 43 H 1.08996 * 109.47295 * 300.00182 * 13 12 11 44 44 H 1.08997 * 109.47077 * 60.00252 * 13 12 11 45 45 H 0.97001 * 119.99986 * 180.02562 * 17 16 14 46 46 H 1.09004 * 109.39252 * 103.69824 * 24 22 11 47 47 H 1.08997 * 109.39743 * 223.51627 * 24 22 11 48 48 H 1.07989 * 120.46244 * 179.73005 * 26 4 3 49 49 H 1.07997 * 119.57167 * 180.29240 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1877 1.1994 0.0000 4 6 3.5822 1.1871 -0.0005 5 7 4.3068 2.3751 0.0000 6 6 3.9900 3.1916 1.2006 7 6 4.3986 4.6303 0.8124 8 6 4.3451 4.6550 -0.7243 9 6 3.9149 3.2387 -1.1451 10 6 5.7197 4.9811 -1.2965 11 7 6.0149 6.4005 -1.1073 12 6 7.4035 6.8533 -1.2204 13 6 8.0759 6.7840 0.1522 14 6 9.5047 7.2492 0.0357 15 1 9.8942 7.5625 -0.9217 16 6 10.3147 7.2738 1.1511 17 7 9.8405 6.8918 2.3167 18 14 12.0854 7.8511 1.0068 19 1 12.3711 8.2245 -0.4018 20 1 12.2945 9.0309 1.8842 21 1 12.9984 6.7565 1.4233 22 6 5.0635 7.3017 -0.8351 23 8 5.3775 8.4693 -0.7400 24 6 3.6204 6.9250 -0.6487 25 8 3.3882 5.6133 -1.1698 26 6 4.2319 -0.0475 -0.0068 27 6 3.4775 -1.2015 -0.0005 28 7 2.1584 -1.1478 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5138 32 1 1.6484 2.1352 -0.0004 33 1 4.5710 2.8495 2.0570 34 1 2.9235 3.1458 1.4208 35 1 5.4092 4.8442 1.1602 36 1 3.6933 5.3499 1.2280 37 1 2.8368 3.1988 -1.3002 38 1 4.4419 2.9339 -2.0493 39 1 6.4752 4.3834 -0.7864 40 1 5.7334 4.7473 -2.3610 41 1 7.9390 6.2116 -1.9202 42 1 7.4222 7.8811 -1.5827 43 1 7.5404 7.4255 0.8519 44 1 8.0573 5.7561 0.5144 45 1 10.4103 6.9095 3.1015 46 1 3.3765 6.9409 0.4136 47 1 2.9886 7.6397 -1.1760 48 1 5.3106 -0.0984 -0.0118 49 1 3.9720 -2.1616 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273582628.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:11 Heat of formation + Delta-G solvation = -45.451080 kcal Electronic energy + Delta-G solvation = -30862.413203 eV Core-core repulsion = 26788.906994 eV Total energy + Delta-G solvation = -4073.506208 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.44808 -41.42204 -39.92959 -38.13131 -37.03375 -35.15189 -34.16227 -33.53841 -32.07167 -31.09962 -30.32431 -28.73099 -28.45756 -27.05708 -26.31781 -24.76739 -23.54242 -23.22927 -22.03031 -21.65794 -19.64993 -18.96796 -18.70432 -18.08997 -17.70823 -17.51177 -16.94707 -16.78552 -16.56381 -16.31348 -15.88077 -15.62765 -15.52069 -15.16152 -15.15467 -14.79788 -14.63884 -14.31623 -14.23191 -14.19482 -13.93404 -13.64001 -13.47584 -13.16201 -13.14495 -12.99497 -12.89543 -12.68815 -12.62443 -12.54745 -12.49634 -12.12629 -11.91433 -11.84145 -11.46289 -11.36223 -10.60976 -10.53324 -10.47666 -10.43167 -9.89174 -9.83937 -9.69825 -8.24571 -6.36380 0.11684 0.18288 1.37874 1.39103 1.44687 1.52544 1.83458 2.25945 2.39771 2.70866 2.83412 3.09228 3.16045 3.33911 3.42731 3.44399 3.59743 3.81602 4.00710 4.02431 4.09251 4.11081 4.19315 4.29485 4.37019 4.41832 4.43473 4.49512 4.52671 4.61976 4.65285 4.65444 4.67522 4.76017 4.79531 4.83429 4.88825 4.91116 4.96112 5.12766 5.22739 5.24500 5.29446 5.43328 5.53830 5.65601 5.75147 5.81514 6.13519 6.14929 6.40561 6.78028 7.03482 7.04082 7.32998 8.87598 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013820 B = 0.002688 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.495414 B =10415.974495 C =11824.474916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.124 3.876 3 C -0.204 4.204 4 C 0.121 3.879 5 N -0.481 5.481 6 C 0.050 3.950 7 C -0.154 4.154 8 C 0.105 3.895 9 C 0.064 3.936 10 C 0.098 3.902 11 N -0.598 5.598 12 C 0.126 3.874 13 C 0.031 3.969 14 C -0.543 4.543 15 H 0.063 0.937 16 C 0.002 3.998 17 N -0.930 5.930 18 Si 0.968 3.032 19 H -0.261 1.261 20 H -0.281 1.281 21 H -0.273 1.273 22 C 0.470 3.530 23 O -0.592 6.592 24 C 0.061 3.939 25 O -0.354 6.354 26 C -0.160 4.160 27 C 0.106 3.894 28 N -0.514 5.514 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.147 0.853 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.109 0.891 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.057 0.943 43 H -0.024 1.024 44 H 0.000 1.000 45 H 0.264 0.736 46 H 0.107 0.893 47 H 0.153 0.847 48 H 0.149 0.851 49 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.877 -15.606 -6.113 26.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.013 4.013 3 C -0.226 4.226 4 C 0.019 3.981 5 N -0.203 5.203 6 C -0.076 4.076 7 C -0.192 4.192 8 C 0.065 3.935 9 C -0.062 4.062 10 C -0.024 4.024 11 N -0.329 5.329 12 C 0.004 3.996 13 C -0.007 4.007 14 C -0.581 4.581 15 H 0.081 0.919 16 C -0.196 4.196 17 N -0.570 5.570 18 Si 0.792 3.208 19 H -0.185 1.185 20 H -0.207 1.207 21 H -0.199 1.199 22 C 0.259 3.741 23 O -0.473 6.473 24 C -0.018 4.018 25 O -0.272 6.272 26 C -0.180 4.180 27 C -0.051 4.051 28 N -0.224 5.224 29 H 0.106 0.894 30 H 0.094 0.906 31 H 0.108 0.892 32 H 0.164 0.836 33 H 0.105 0.895 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.112 0.888 37 H 0.102 0.898 38 H 0.127 0.873 39 H 0.105 0.895 40 H 0.111 0.889 41 H 0.104 0.896 42 H 0.075 0.925 43 H -0.006 1.006 44 H 0.019 0.981 45 H 0.073 0.927 46 H 0.124 0.876 47 H 0.171 0.829 48 H 0.167 0.833 49 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -19.744 -16.012 -6.057 26.132 hybrid contribution 1.271 1.602 0.677 2.154 sum -18.473 -14.410 -5.379 24.039 Atomic orbital electron populations 1.20794 0.87151 1.04171 1.03936 1.21579 0.98266 0.87793 0.93674 1.22593 0.94927 1.00403 1.04640 1.19415 0.90652 0.92007 0.96041 1.63019 1.51739 1.02193 1.03374 1.23173 1.00822 0.90664 0.92965 1.22979 1.03102 0.98180 0.94939 1.22033 0.87550 0.90299 0.93655 1.23018 1.01754 0.86910 0.94537 1.22223 0.97209 0.80286 1.02690 1.47759 1.07921 1.08735 1.68520 1.21508 0.79665 0.99705 0.98736 1.19110 0.94411 0.94970 0.92188 1.21552 0.97080 1.44208 0.95296 0.91863 1.25967 1.03609 0.95192 0.94842 1.70105 1.38078 1.48697 1.00116 0.85361 0.78774 0.77987 0.78701 1.18453 1.20700 1.19884 1.21694 0.90414 0.85545 0.76426 1.90723 1.83461 1.20122 1.53042 1.22887 0.90133 0.85565 1.03219 1.88044 1.50666 1.16996 1.71490 1.22229 1.02639 0.91504 1.01650 1.23090 0.88909 0.99330 0.93795 1.67613 1.10926 1.29986 1.13910 0.89418 0.90576 0.89220 0.83558 0.89503 0.91016 0.91879 0.88787 0.89803 0.87256 0.89539 0.88872 0.89603 0.92475 1.00588 0.98145 0.92721 0.87590 0.82934 0.83289 0.80172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.13 10.17 71.24 0.72 -0.40 16 2 C 0.12 2.08 6.78 42.46 0.29 2.37 16 3 C -0.20 -3.25 7.76 22.49 0.17 -3.07 16 4 C 0.12 2.18 4.92 38.58 0.19 2.37 16 5 N -0.48 -9.18 5.40 -681.00 -3.68 -12.85 16 6 C 0.05 0.95 6.38 86.49 0.55 1.50 16 7 C -0.15 -3.55 5.66 31.37 0.18 -3.37 16 8 C 0.11 2.31 1.03 -10.42 -0.01 2.30 16 9 C 0.06 1.12 5.64 86.26 0.49 1.61 16 10 C 0.10 2.66 5.08 86.25 0.44 3.10 16 11 N -0.60 -21.48 2.80 -825.58 -2.31 -23.79 16 12 C 0.13 5.48 5.26 86.38 0.45 5.93 16 13 C 0.03 1.69 5.29 29.85 0.16 1.84 16 14 C -0.54 -31.37 9.11 25.60 0.23 -31.14 16 15 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 16 C 0.00 0.12 5.46 84.65 0.46 0.58 16 17 N -0.93 -57.07 13.29 21.45 0.28 -56.79 16 18 Si 0.97 44.73 29.54 68.60 2.03 46.76 16 19 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 20 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 21 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 22 C 0.47 17.07 7.42 87.68 0.65 17.72 16 23 O -0.59 -27.28 16.34 -3.04 -0.05 -27.33 16 24 C 0.06 1.47 6.42 71.11 0.46 1.93 16 25 O -0.35 -7.75 10.35 -148.98 -1.54 -9.30 16 26 C -0.16 -2.73 10.06 22.49 0.23 -2.51 16 27 C 0.11 1.73 11.17 84.58 0.94 2.68 16 28 N -0.51 -9.91 10.27 -184.20 -1.89 -11.81 16 29 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.09 0.68 8.07 -2.39 -0.02 0.66 16 32 H 0.15 1.87 6.90 -2.91 -0.02 1.85 16 33 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.07 1.14 6.83 -2.39 -0.02 1.12 16 35 H 0.06 1.91 7.62 -2.39 -0.02 1.89 16 36 H 0.09 1.96 6.16 -2.39 -0.01 1.94 16 37 H 0.08 1.29 6.49 -2.39 -0.02 1.27 16 38 H 0.11 1.74 7.70 -2.39 -0.02 1.72 16 39 H 0.09 2.55 7.97 -2.38 -0.02 2.53 16 40 H 0.09 2.12 7.93 -2.39 -0.02 2.10 16 41 H 0.09 3.33 8.04 -2.39 -0.02 3.31 16 42 H 0.06 2.71 7.22 -2.39 -0.02 2.69 16 43 H -0.02 -1.52 8.14 -2.39 -0.02 -1.54 16 44 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 45 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 46 H 0.11 2.26 6.50 -2.38 -0.02 2.25 16 47 H 0.15 3.01 8.14 -2.39 -0.02 2.99 16 48 H 0.15 2.29 8.06 -2.92 -0.02 2.27 16 49 H 0.18 1.94 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -76.16 391.39 0.39 -75.76 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 0.95 Total: 15.89 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: 6.61 Total: 3.45 kcal Atomic # 7 Polarization: -97.64 SS G_CDS: -7.60 Total: -105.23 kcal Atomic # 8 Polarization: -35.03 SS G_CDS: -1.59 Total: -36.62 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -76.16 0.39 -75.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273582628.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.310 kcal (2) G-P(sol) polarization free energy of solvation -76.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds