Wall clock time and date at job start Wed Apr 1 2020 04:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38070 * 119.56671 * 2 1 4 4 C 1.38841 * 119.32175 * 179.97438 * 3 2 1 5 5 C 1.38336 * 118.50814 * 0.02562 * 4 3 2 6 6 C 1.39101 * 119.10074 * 359.97438 * 5 4 3 7 7 N 1.39003 * 119.70274 * 179.97438 * 6 5 4 8 8 C 1.48601 * 111.00203 * 59.87760 * 7 6 5 9 9 C 1.54502 * 104.61298 * 201.21784 * 8 7 6 10 10 C 1.53768 * 104.88312 * 23.76097 * 9 8 7 11 11 C 1.48672 * 111.00559 * 304.36701 * 7 6 5 12 12 C 1.52425 * 110.34849 * 119.00307 * 10 9 8 13 13 N 1.46197 * 109.94749 * 169.63488 * 12 10 9 14 14 C 1.46504 * 118.76911 * 162.45777 * 13 12 10 15 15 C 1.53001 * 109.47415 * 90.00195 * 14 13 12 16 16 C 1.50694 * 109.47168 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 15 14 18 18 C 1.37885 * 119.99902 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99913 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99854 * 179.72538 * 18 16 15 21 21 H 1.48504 * 109.47032 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46816 * 120.00323 * 20 18 16 23 23 H 1.48495 * 109.46630 * 240.00111 * 20 18 16 24 24 C 1.33837 * 122.45519 * 342.73754 * 13 12 10 25 25 O 1.21285 * 118.69590 * 182.15288 * 24 13 12 26 26 C 1.50287 * 122.62171 * 1.90474 * 24 13 12 27 27 O 1.42571 * 110.26486 * 240.88866 * 10 9 8 28 28 N 1.31943 * 119.57297 * 180.23448 * 2 1 3 29 29 H 1.08998 * 109.46898 * 89.99931 * 1 2 3 30 30 H 1.09006 * 109.46618 * 209.99607 * 1 2 3 31 31 H 1.08990 * 109.47377 * 329.99457 * 1 2 3 32 32 H 1.07994 * 120.33940 * 0.02562 * 3 2 1 33 33 H 1.08004 * 120.74145 * 180.02562 * 4 3 2 34 34 H 1.08001 * 120.45003 * 180.02562 * 5 4 3 35 35 H 1.09004 * 110.40575 * 82.43515 * 8 7 6 36 36 H 1.08997 * 110.40839 * 320.00798 * 8 7 6 37 37 H 1.08995 * 110.35979 * 264.90027 * 9 8 7 38 38 H 1.09007 * 110.44376 * 142.65531 * 9 8 7 39 39 H 1.09002 * 110.42957 * 39.89218 * 11 7 6 40 40 H 1.09006 * 110.42975 * 277.39803 * 11 7 6 41 41 H 1.09008 * 109.38848 * 49.48839 * 12 10 9 42 42 H 1.09001 * 109.38906 * 289.78668 * 12 10 9 43 43 H 1.09000 * 109.46981 * 329.99836 * 14 13 12 44 44 H 1.09002 * 109.46732 * 209.99894 * 14 13 12 45 45 H 1.08998 * 109.46837 * 59.99777 * 15 14 13 46 46 H 1.09002 * 109.46926 * 299.99581 * 15 14 13 47 47 H 0.97001 * 119.99646 * 180.02562 * 19 18 16 48 48 H 1.09002 * 109.53591 * 223.74714 * 26 24 13 49 49 H 1.08994 * 109.13880 * 103.99058 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1883 1.2009 0.0000 4 6 3.5767 1.1950 0.0005 5 6 4.2318 -0.0235 0.0005 6 6 3.4816 -1.1948 0.0005 7 7 4.1269 -2.4260 -0.0001 8 6 4.9913 -2.5748 1.1995 9 6 6.0142 -3.6652 0.8100 10 6 6.0611 -3.6319 -0.7266 11 6 5.0678 -2.5340 -1.1461 12 6 7.4655 -3.2847 -1.2066 13 7 7.5653 -3.4944 -2.6500 14 6 8.6721 -2.8693 -3.3785 15 6 9.8680 -3.8232 -3.4059 16 6 11.0062 -3.1804 -4.1557 17 1 10.8883 -2.1907 -4.5716 18 6 12.1982 -3.8559 -4.3109 19 7 12.3416 -5.0613 -3.8050 20 14 13.6065 -3.0622 -5.2470 21 1 13.1916 -1.7161 -5.7177 22 1 14.7844 -2.9319 -4.3522 23 1 13.9630 -3.9073 -6.4148 24 6 6.6803 -4.2315 -3.3316 25 8 6.8506 -4.3932 -4.5215 26 6 5.4867 -4.8716 -2.6803 27 8 5.6574 -4.8908 -1.2603 28 7 2.1582 -1.1475 -0.0047 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3633 0.8898 0.5139 32 1 1.6468 2.1353 0.0004 33 1 4.1328 2.1209 0.0010 34 1 5.3110 -0.0647 0.0014 35 1 4.3998 -2.8972 2.0565 36 1 5.5008 -1.6367 1.4196 37 1 5.6785 -4.6419 1.1582 38 1 6.9952 -3.4324 1.2244 39 1 5.5884 -1.5890 -1.3013 40 1 4.5344 -2.8286 -2.0499 41 1 8.1896 -3.9209 -0.6975 42 1 7.6786 -2.2407 -0.9769 43 1 8.9576 -1.9428 -2.8803 44 1 8.3579 -2.6511 -4.3992 45 1 9.5824 -4.7496 -3.9041 46 1 10.1822 -4.0414 -2.3852 47 1 13.1803 -5.5363 -3.9139 48 1 5.3760 -5.8927 -3.0454 49 1 4.5935 -4.2990 -2.9298 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274840269.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:23 Heat of formation + Delta-G solvation = -38.899765 kcal Electronic energy + Delta-G solvation = -30818.962188 eV Core-core repulsion = 26745.740066 eV Total energy + Delta-G solvation = -4073.222122 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.48509 -41.41813 -39.89139 -37.92700 -37.04095 -35.15985 -34.14932 -33.66794 -32.18281 -31.49065 -30.06675 -29.03567 -28.15992 -27.10310 -26.27818 -24.48807 -23.47490 -23.36672 -22.02492 -21.80388 -19.72625 -18.87615 -18.71604 -18.28227 -17.58765 -17.45409 -17.26446 -16.79916 -16.54217 -16.37811 -15.86800 -15.75203 -15.34521 -15.27350 -14.89085 -14.70277 -14.54661 -14.31494 -14.29392 -14.01363 -13.73116 -13.67480 -13.37314 -13.21013 -13.09388 -12.90148 -12.86928 -12.73776 -12.67019 -12.63538 -12.50735 -12.05284 -11.92330 -11.75041 -11.51063 -11.31677 -10.83281 -10.79745 -10.61096 -10.43058 -9.76692 -9.71642 -9.55005 -8.24004 -6.36564 -0.00769 0.31191 1.37759 1.39838 1.41868 1.52936 1.82556 2.35570 2.39144 2.49735 2.67217 3.09620 3.16813 3.31351 3.50415 3.57892 3.70704 3.85281 3.93321 4.02281 4.09203 4.11454 4.14015 4.26605 4.30779 4.31603 4.35692 4.46370 4.54213 4.56943 4.60050 4.69038 4.75310 4.76757 4.79487 4.87811 4.90267 5.01425 5.14927 5.16700 5.18092 5.23215 5.41835 5.46370 5.53371 5.55035 5.78004 5.84783 6.07091 6.14657 6.37696 6.78839 7.01225 7.12618 7.33042 8.88442 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016570 B = 0.002460 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.418300 B =11380.053730 C =11909.751430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.119 3.881 3 C -0.176 4.176 4 C -0.062 4.062 5 C -0.214 4.214 6 C 0.281 3.719 7 N -0.482 5.482 8 C 0.047 3.953 9 C -0.100 4.100 10 C 0.103 3.897 11 C 0.022 3.978 12 C 0.092 3.908 13 N -0.599 5.599 14 C 0.129 3.871 15 C 0.026 3.974 16 C -0.541 4.541 17 H 0.066 0.934 18 C -0.002 4.002 19 N -0.933 5.933 20 Si 0.971 3.029 21 H -0.258 1.258 22 H -0.273 1.273 23 H -0.283 1.283 24 C 0.472 3.528 25 O -0.589 6.589 26 C 0.059 3.941 27 O -0.356 6.356 28 N -0.503 5.503 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.101 0.899 32 H 0.166 0.834 33 H 0.164 0.836 34 H 0.147 0.853 35 H 0.096 0.904 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.116 0.884 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.114 0.886 43 H 0.094 0.906 44 H 0.056 0.944 45 H -0.028 1.028 46 H 0.000 1.000 47 H 0.264 0.736 48 H 0.140 0.860 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.798 14.427 15.385 30.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.019 4.019 3 C -0.195 4.195 4 C -0.088 4.088 5 C -0.237 4.237 6 C 0.051 3.949 7 N -0.204 5.204 8 C -0.079 4.079 9 C -0.138 4.138 10 C 0.062 3.938 11 C -0.105 4.105 12 C -0.030 4.030 13 N -0.330 5.330 14 C 0.007 3.993 15 C -0.012 4.012 16 C -0.580 4.580 17 H 0.084 0.916 18 C -0.199 4.199 19 N -0.573 5.573 20 Si 0.795 3.205 21 H -0.182 1.182 22 H -0.198 1.198 23 H -0.209 1.209 24 C 0.260 3.740 25 O -0.471 6.471 26 C -0.020 4.020 27 O -0.275 6.275 28 N -0.214 5.214 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.120 0.880 32 H 0.184 0.816 33 H 0.182 0.818 34 H 0.164 0.836 35 H 0.114 0.886 36 H 0.091 0.909 37 H 0.115 0.885 38 H 0.134 0.866 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.132 0.868 43 H 0.112 0.888 44 H 0.074 0.926 45 H -0.010 1.010 46 H 0.019 0.981 47 H 0.073 0.927 48 H 0.157 0.843 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -22.551 12.860 14.923 29.944 hybrid contribution 2.084 1.112 -1.007 2.567 sum -20.467 13.972 13.916 28.422 Atomic orbital electron populations 1.20803 0.86918 1.04358 1.03797 1.21767 0.98335 0.87747 0.94061 1.22355 0.95198 0.99959 1.01998 1.21898 0.94780 0.98679 0.93447 1.22686 1.02412 0.93970 1.04619 1.19888 0.89619 0.89185 0.96203 1.62181 1.26046 1.28501 1.03698 1.23339 0.93285 0.99026 0.92238 1.22344 1.01255 1.01213 0.88987 1.22225 0.90919 0.83830 0.96834 1.23773 0.93235 0.99048 0.94447 1.22394 0.97227 1.04344 0.79067 1.47755 1.26401 1.49570 1.09253 1.21542 0.85337 0.96131 0.96286 1.19159 0.92684 0.94022 0.95366 1.21560 0.98224 1.02838 1.35327 0.91554 1.26038 1.01945 0.95360 0.96607 1.70129 1.26709 1.13676 1.46789 0.85318 0.78341 0.78813 0.78069 1.18199 1.19809 1.20914 1.21609 0.85734 0.79111 0.87536 1.90726 1.76772 1.61849 1.17738 1.22814 0.93898 1.04346 0.80953 1.88132 1.88556 1.31569 1.19197 1.67093 1.09563 1.31217 1.13559 0.89784 0.91273 0.88008 0.81603 0.81817 0.83565 0.88616 0.90905 0.88541 0.86564 0.90770 0.90462 0.90363 0.86832 0.88756 0.92587 1.00963 0.98143 0.92735 0.84268 0.87606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.14 10.17 71.24 0.72 -0.41 16 2 C 0.12 2.06 6.78 42.50 0.29 2.35 16 3 C -0.18 -2.19 9.73 22.37 0.22 -1.98 16 4 C -0.06 -0.78 10.17 22.44 0.23 -0.55 16 5 C -0.21 -3.50 8.03 22.50 0.18 -3.32 16 6 C 0.28 6.08 5.91 133.05 0.79 6.87 16 7 N -0.48 -10.41 5.47 -688.22 -3.77 -14.17 16 8 C 0.05 0.74 6.37 86.48 0.55 1.29 16 9 C -0.10 -1.61 6.44 31.36 0.20 -1.41 16 10 C 0.10 2.29 1.04 -10.43 -0.01 2.28 16 11 C 0.02 0.48 5.16 86.26 0.45 0.93 16 12 C 0.09 2.37 5.13 86.25 0.44 2.81 16 13 N -0.60 -21.51 2.80 -825.60 -2.31 -23.82 16 14 C 0.13 5.49 5.23 86.38 0.45 5.94 16 15 C 0.03 1.40 5.29 29.85 0.16 1.56 16 16 C -0.54 -31.22 9.11 25.60 0.23 -30.98 16 17 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 18 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 19 N -0.93 -58.11 13.29 21.45 0.28 -57.83 16 20 Si 0.97 44.71 29.54 68.60 2.03 46.73 16 21 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 22 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 23 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 24 C 0.47 18.04 7.41 87.67 0.65 18.69 16 25 O -0.59 -28.34 16.37 -3.05 -0.05 -28.39 16 26 C 0.06 1.69 6.39 71.11 0.45 2.15 16 27 O -0.36 -9.74 10.32 -148.98 -1.54 -11.28 16 28 N -0.50 -11.91 10.31 -181.33 -1.87 -13.78 16 29 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.10 0.56 8.07 -2.39 -0.02 0.54 16 32 H 0.17 0.95 8.06 -2.91 -0.02 0.93 16 33 H 0.16 1.06 8.06 -2.91 -0.02 1.04 16 34 H 0.15 1.90 6.74 -2.91 -0.02 1.88 16 35 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.07 0.88 6.74 -2.39 -0.02 0.86 16 37 H 0.10 1.64 7.97 -2.39 -0.02 1.62 16 38 H 0.12 1.34 7.68 -2.38 -0.02 1.32 16 39 H 0.07 1.46 5.97 -2.39 -0.01 1.44 16 40 H 0.08 1.95 5.65 -2.38 -0.01 1.93 16 41 H 0.08 2.12 8.09 -2.38 -0.02 2.10 16 42 H 0.11 2.22 7.70 -2.39 -0.02 2.21 16 43 H 0.09 3.41 7.94 -2.39 -0.02 3.39 16 44 H 0.06 2.60 7.29 -2.39 -0.02 2.59 16 45 H -0.03 -1.81 8.14 -2.39 -0.02 -1.83 16 46 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 47 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 48 H 0.14 3.73 8.14 -2.39 -0.02 3.71 16 49 H 0.11 2.66 6.33 -2.39 -0.02 2.65 16 Total: -1.00 -82.52 390.41 0.19 -82.33 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: 0.96 Total: 13.63 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: 6.46 Total: 6.58 kcal Atomic # 7 Polarization: -101.94 SS G_CDS: -7.66 Total: -109.61 kcal Atomic # 8 Polarization: -38.08 SS G_CDS: -1.59 Total: -39.67 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -82.52 0.19 -82.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274840269.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.430 kcal (2) G-P(sol) polarization free energy of solvation -82.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds