Wall clock time and date at job start Wed Apr 1 2020 04:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38225 * 120.42238 * 2 1 4 4 N 1.31848 * 120.76463 * 179.97438 * 3 2 1 5 5 C 1.31888 * 121.72541 * 0.02562 * 4 3 2 6 6 C 1.38174 * 120.76844 * 359.97438 * 5 4 3 7 7 C 1.50697 * 120.42217 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47222 * 89.99821 * 7 6 5 9 9 C 1.50701 * 109.47189 * 180.02562 * 8 7 6 10 10 O 1.21289 * 119.99617 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00269 * 180.02562 * 9 8 7 12 12 C 1.46499 * 120.00032 * 179.97438 * 11 9 8 13 13 H 1.09002 * 110.97339 * 37.70127 * 12 11 9 14 14 C 1.55005 * 111.10743 * 273.54467 * 12 11 9 15 15 O 1.43867 * 105.17202 * 205.93023 * 14 12 11 16 16 C 1.42525 * 109.62936 * 24.31000 * 15 14 12 17 17 C 1.53273 * 115.51844 * 227.83538 * 16 15 14 18 18 N 1.47708 * 85.91121 * 219.80350 * 17 16 15 19 19 C 1.36945 * 134.43751 * 204.17310 * 18 17 16 20 20 H 1.08000 * 119.99549 * 179.97438 * 19 18 17 21 21 C 1.38809 * 119.99831 * 359.96856 * 19 18 17 22 22 N 1.31612 * 120.00136 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99732 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47062 * 60.00513 * 23 21 19 25 25 H 1.48501 * 109.46931 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47244 * 300.00140 * 23 21 19 27 27 C 1.47710 * 91.12546 * 24.15465 * 18 17 16 28 28 C 1.53773 * 108.37764 * 358.12504 * 16 15 14 29 29 C 1.38628 * 120.41785 * 180.20222 * 2 1 3 30 30 H 1.09004 * 109.46609 * 90.00061 * 1 2 3 31 31 H 1.09002 * 109.47848 * 209.99999 * 1 2 3 32 32 H 1.09003 * 109.47258 * 330.00277 * 1 2 3 33 33 H 1.07998 * 119.61829 * 359.95346 * 3 2 1 34 34 H 1.08008 * 119.61291 * 179.97438 * 5 4 3 35 35 H 1.09005 * 109.47054 * 329.99444 * 7 6 5 36 36 H 1.09002 * 109.46923 * 209.99972 * 7 6 5 37 37 H 1.08996 * 109.47276 * 59.99959 * 8 7 6 38 38 H 1.09006 * 109.46593 * 299.99793 * 8 7 6 39 39 H 0.97005 * 119.99544 * 359.97438 * 11 9 8 40 40 H 1.09003 * 110.30159 * 87.01109 * 14 12 11 41 41 H 1.09000 * 110.38429 * 324.89538 * 14 12 11 42 42 H 1.09007 * 113.80079 * 334.04747 * 17 16 15 43 43 H 1.08993 * 113.80736 * 105.55452 * 17 16 15 44 44 H 0.97007 * 120.00351 * 179.97438 * 22 21 19 45 45 H 1.09001 * 113.80025 * 221.59517 * 27 18 17 46 46 H 1.08995 * 113.91219 * 90.10557 * 27 18 17 47 47 H 1.09007 * 110.92524 * 97.23079 * 28 16 15 48 48 H 1.09001 * 110.92171 * 220.86990 * 28 16 15 49 49 H 1.08004 * 120.79109 * 0.03678 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1998 0.0005 5 6 4.2256 0.0822 0.0005 6 6 3.5948 -1.1472 0.0005 7 6 4.4026 -2.4194 0.0012 8 6 4.6754 -2.8496 1.4438 9 6 5.4837 -4.1214 1.4444 10 8 5.8091 -4.6336 0.3942 11 7 5.8442 -4.6903 2.6118 12 6 6.6295 -5.9270 2.6124 13 1 7.3647 -5.9227 1.8076 14 6 5.7104 -7.1720 2.5223 15 8 6.4584 -8.2373 3.1349 16 6 7.4110 -7.6922 4.0442 17 6 8.8351 -8.2450 3.9187 18 7 8.8657 -8.2091 5.3951 19 6 9.8618 -8.1334 6.3318 20 1 9.6146 -8.1220 7.3831 21 6 11.1891 -8.0714 5.9301 22 7 11.4902 -8.0849 4.6490 23 14 12.5477 -7.9673 7.2079 24 1 12.4942 -9.1638 8.0858 25 1 13.8656 -7.9120 6.5257 26 1 12.3634 -6.7430 8.0278 27 6 7.3920 -8.2871 5.4566 28 6 7.3098 -6.1587 3.9908 29 6 2.2089 -1.1955 -0.0042 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3635 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.6676 2.1276 -0.0008 34 1 5.3047 0.1284 0.0005 35 1 5.3488 -2.2491 -0.5124 36 1 3.8462 -3.2032 -0.5127 37 1 3.7292 -3.0198 1.9573 38 1 5.2318 -2.0656 1.9576 39 1 5.5836 -4.2808 3.4517 40 1 5.4973 -7.4101 1.4802 41 1 4.7826 -6.9991 3.0677 42 1 8.8812 -9.2513 3.5022 43 1 9.5349 -7.5551 3.4473 44 1 12.4177 -8.0412 4.3682 45 1 6.9476 -7.6305 6.2046 46 1 7.0049 -9.3051 5.4999 47 1 6.6860 -5.7813 4.8012 48 1 8.2992 -5.7022 4.0182 49 1 1.6887 -2.1420 -0.0082 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327397093.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:04 Heat of formation + Delta-G solvation = -21.605583 kcal Electronic energy + Delta-G solvation = -29075.683751 eV Core-core repulsion = 25003.211562 eV Total energy + Delta-G solvation = -4072.472190 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.64386 -41.24676 -40.39360 -37.92960 -35.82267 -35.48772 -34.46483 -34.14009 -32.09053 -30.80862 -29.77925 -28.13580 -27.34644 -26.77583 -26.09672 -24.00747 -23.84988 -22.80433 -21.83205 -21.28295 -20.36149 -18.76816 -18.36580 -17.83498 -17.67724 -17.59324 -17.16923 -16.58916 -16.32888 -16.30447 -15.67813 -15.59603 -15.19196 -15.06601 -14.73018 -14.56938 -14.27520 -14.13726 -13.94323 -13.91579 -13.78671 -13.65657 -13.38198 -13.15779 -13.06929 -12.84094 -12.80163 -12.67168 -12.46794 -12.41778 -12.32238 -11.99181 -11.95241 -11.79573 -11.56302 -11.01310 -10.85828 -10.49215 -10.37718 -10.34874 -10.09458 -9.70422 -8.98345 -7.92057 -5.27254 0.15570 0.35268 1.46152 1.49854 1.56087 1.62302 2.04120 2.44102 2.83255 2.89386 3.21550 3.37331 3.47882 3.56275 3.62869 3.70674 3.73738 3.85952 3.95597 4.04834 4.06434 4.09253 4.11540 4.22127 4.26695 4.49711 4.64328 4.66076 4.70349 4.73214 4.75092 4.82277 4.84757 4.89456 4.91806 4.92777 4.99054 5.03318 5.12466 5.17549 5.21890 5.25801 5.35154 5.39794 5.43583 5.48460 5.83229 5.86340 6.17761 6.54009 6.87813 7.05392 7.24929 7.57675 8.51846 9.25037 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019496 B = 0.001754 C = 0.001683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.865455 B =15957.625746 C =16629.439519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.135 4.135 3 C 0.076 3.924 4 N -0.510 5.510 5 C 0.078 3.922 6 C -0.125 4.125 7 C -0.056 4.056 8 C -0.123 4.123 9 C 0.512 3.488 10 O -0.581 6.581 11 N -0.704 5.704 12 C 0.123 3.877 13 H 0.079 0.921 14 C 0.044 3.956 15 O -0.382 6.382 16 C 0.078 3.922 17 C 0.158 3.842 18 N -0.628 5.628 19 C -0.234 4.234 20 H 0.091 0.909 21 C -0.067 4.067 22 N -0.955 5.955 23 Si 0.982 3.018 24 H -0.278 1.278 25 H -0.297 1.297 26 H -0.271 1.271 27 C 0.119 3.881 28 C -0.108 4.108 29 C -0.080 4.080 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.169 0.831 34 H 0.160 0.840 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.122 0.878 38 H 0.114 0.886 39 H 0.420 0.580 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.007 0.993 43 H 0.049 0.951 44 H 0.249 0.751 45 H 0.075 0.925 46 H 0.041 0.959 47 H 0.111 0.889 48 H 0.073 0.927 49 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.055 17.872 -7.125 31.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.136 4.136 3 C -0.081 4.081 4 N -0.218 5.218 5 C -0.079 4.079 6 C -0.127 4.127 7 C -0.094 4.094 8 C -0.162 4.162 9 C 0.301 3.699 10 O -0.461 6.461 11 N -0.358 5.358 12 C 0.017 3.983 13 H 0.097 0.903 14 C -0.033 4.033 15 O -0.300 6.300 16 C 0.037 3.963 17 C 0.032 3.968 18 N -0.356 5.356 19 C -0.361 4.361 20 H 0.108 0.892 21 C -0.260 4.260 22 N -0.603 5.603 23 Si 0.810 3.190 24 H -0.204 1.204 25 H -0.223 1.223 26 H -0.196 1.196 27 C -0.007 4.007 28 C -0.146 4.146 29 C -0.106 4.106 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.186 0.814 34 H 0.177 0.823 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.140 0.860 38 H 0.132 0.868 39 H 0.258 0.742 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.025 0.975 43 H 0.067 0.933 44 H 0.058 0.942 45 H 0.093 0.907 46 H 0.059 0.941 47 H 0.129 0.871 48 H 0.092 0.908 49 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -24.106 18.125 -7.786 31.149 hybrid contribution 1.004 -0.991 0.659 1.557 sum -23.102 17.134 -7.126 29.632 Atomic orbital electron populations 1.20792 0.88195 1.04242 1.03409 1.21243 0.99039 0.93594 0.99768 1.23059 0.89669 0.98867 0.96483 1.67675 1.09522 1.32058 1.12528 1.22887 1.00891 0.87418 0.96660 1.20866 0.94909 0.96071 1.00852 1.20176 0.99880 0.93393 0.95993 1.21648 1.01778 0.93767 0.99035 1.21341 0.79294 0.86442 0.82852 1.90732 1.56750 1.65799 1.32798 1.45742 1.54954 1.25234 1.09843 1.22374 0.93168 0.84992 0.97814 0.90335 1.23844 0.94839 0.85960 0.98695 1.88376 1.51054 1.32024 1.58544 1.23729 0.88934 0.93684 0.89959 1.22382 0.92328 0.96622 0.85516 1.45971 1.01545 1.85638 1.02485 1.19376 0.85636 1.42851 0.88280 0.89159 1.25685 0.99379 1.02710 0.98196 1.70021 1.17454 1.57749 1.15104 0.85101 0.77723 0.78422 0.77767 1.20420 1.22313 1.19641 1.22972 0.84499 0.98612 0.94567 1.22738 1.02295 0.92745 0.96800 1.21734 0.93227 0.99311 0.96306 0.90145 0.90274 0.90081 0.81369 0.82263 0.90850 0.90264 0.85986 0.86775 0.74173 0.89846 0.89575 0.97527 0.93270 0.94214 0.90712 0.94080 0.87101 0.90789 0.82948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.55 10.04 71.24 0.71 0.16 16 2 C -0.13 -1.46 5.90 -19.77 -0.12 -1.58 16 3 C 0.08 1.06 10.86 84.69 0.92 1.98 16 4 N -0.51 -9.49 10.36 -195.85 -2.03 -11.52 16 5 C 0.08 1.26 10.86 84.67 0.92 2.18 16 6 C -0.13 -1.67 5.15 -19.78 -0.10 -1.78 16 7 C -0.06 -0.76 4.66 29.85 0.14 -0.62 16 8 C -0.12 -1.36 5.68 29.85 0.17 -1.19 16 9 C 0.51 10.08 7.83 87.66 0.69 10.76 16 10 O -0.58 -17.00 15.73 -3.06 -0.05 -17.05 16 11 N -0.70 -12.82 5.24 -435.30 -2.28 -15.10 16 12 C 0.12 3.27 3.37 46.52 0.16 3.43 16 13 H 0.08 2.57 7.74 -2.39 -0.02 2.55 16 14 C 0.04 1.20 7.49 72.67 0.54 1.75 16 15 O -0.38 -13.80 11.14 -148.98 -1.66 -15.46 16 16 C 0.08 2.98 1.68 -10.31 -0.02 2.96 16 17 C 0.16 7.92 6.94 86.24 0.60 8.52 16 18 N -0.63 -32.38 3.67 -732.87 -2.69 -35.07 16 19 C -0.23 -12.97 10.70 84.03 0.90 -12.07 16 20 H 0.09 4.70 7.83 -2.91 -0.02 4.68 16 21 C -0.07 -3.79 5.50 84.86 0.47 -3.32 16 22 N -0.95 -58.21 11.39 21.65 0.25 -57.96 16 23 Si 0.98 45.37 29.55 68.60 2.03 47.40 16 24 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 25 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 26 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 27 C 0.12 4.80 8.45 86.23 0.73 5.53 16 28 C -0.11 -3.25 5.96 31.70 0.19 -3.07 16 29 C -0.08 -0.90 9.55 22.47 0.21 -0.68 16 30 H 0.08 0.33 8.14 -2.38 -0.02 0.31 16 31 H 0.08 0.27 8.10 -2.39 -0.02 0.25 16 32 H 0.08 0.26 8.09 -2.39 -0.02 0.24 16 33 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 34 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 35 H 0.07 1.19 8.05 -2.38 -0.02 1.17 16 36 H 0.08 1.16 8.05 -2.39 -0.02 1.14 16 37 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.11 0.95 8.14 -2.38 -0.02 0.93 16 39 H 0.42 4.73 8.51 -92.70 -0.79 3.95 16 40 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 43 H 0.05 2.72 7.01 -2.39 -0.02 2.70 16 44 H 0.25 14.80 8.31 -92.70 -0.77 14.03 16 45 H 0.07 2.60 8.01 -2.39 -0.02 2.58 16 46 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.11 2.61 7.85 -2.38 -0.02 2.59 16 48 H 0.07 2.64 7.83 -2.39 -0.02 2.62 16 49 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 Total: -1.00 -77.30 405.58 0.84 -76.46 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 0.16 Total: 15.34 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: 7.11 Total: 12.96 kcal Atomic # 7 Polarization: -112.90 SS G_CDS: -6.75 Total: -119.66 kcal Atomic # 8 Polarization: -30.80 SS G_CDS: -1.71 Total: -32.51 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -77.30 0.84 -76.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327397093.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.858 kcal (2) G-P(sol) polarization free energy of solvation -77.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds