Wall clock time and date at job start Wed Apr 1 2020 02:56:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 C 1.38230 * 119.62078 * 2 1
4 4 C 1.38627 * 119.16341 * 179.75507 * 3 2 1
5 5 C 1.38672 * 118.41699 * 0.50111 * 4 3 2
6 6 C 1.38181 * 119.16526 * 359.73212 * 5 4 3
7 7 C 1.50697 * 119.61513 * 179.97438 * 6 5 4
8 8 N 1.46497 * 109.47109 * 95.02816 * 7 6 5
9 9 C 1.46498 * 119.99984 * 269.99772 * 8 7 6
10 10 C 1.34778 * 120.00431 * 89.99459 * 8 7 6
11 11 O 1.21345 * 120.00016 * 354.97133 * 10 8 7
12 12 C 1.49448 * 120.00137 * 174.96654 * 10 8 7
13 13 O 1.21345 * 120.00291 * 85.04144 * 12 10 8
14 14 N 1.34781 * 120.00094 * 265.03534 * 12 10 8
15 15 C 1.46924 * 120.62790 * 354.85123 * 14 12 10
16 16 C 1.53195 * 108.77174 * 233.57655 * 15 14 12
17 17 C 1.53039 * 109.31773 * 305.37043 * 16 15 14
18 18 C 1.53035 * 109.53939 * 61.35668 * 17 16 15
19 19 H 1.09010 * 109.49416 * 58.59428 * 18 17 16
20 20 C 1.50703 * 109.50053 * 178.68358 * 18 17 16
21 21 H 1.08008 * 119.99295 * 34.89078 * 20 18 17
22 22 C 1.37869 * 120.00486 * 214.89221 * 20 18 17
23 23 N 1.31512 * 120.00346 * 184.79956 * 22 20 18
24 24 Si 1.86800 * 119.99920 * 4.79969 * 22 20 18
25 25 H 1.48501 * 109.47397 * 94.76528 * 24 22 20
26 26 H 1.48503 * 109.47160 * 214.76158 * 24 22 20
27 27 H 1.48503 * 109.47045 * 334.76368 * 24 22 20
28 28 C 1.46925 * 120.62776 * 174.56118 * 14 12 10
29 29 N 1.31853 * 119.62077 * 180.26142 * 2 1 3
30 30 H 1.09003 * 109.47403 * 269.73411 * 1 2 3
31 31 H 1.08997 * 109.46851 * 149.73152 * 1 2 3
32 32 H 1.09000 * 109.47018 * 29.73355 * 1 2 3
33 33 H 1.08003 * 120.41544 * 359.96859 * 3 2 1
34 34 H 1.07993 * 120.78721 * 180.21303 * 4 3 2
35 35 H 1.08004 * 120.41513 * 179.75704 * 5 4 3
36 36 H 1.09004 * 109.47228 * 215.02311 * 7 6 5
37 37 H 1.08998 * 109.47754 * 335.02670 * 7 6 5
38 38 H 1.08997 * 109.47537 * 95.14304 * 9 8 7
39 39 H 1.09001 * 109.47599 * 215.14398 * 9 8 7
40 40 H 1.09002 * 109.47426 * 335.14577 * 9 8 7
41 41 H 1.08995 * 109.59223 * 353.36972 * 15 14 12
42 42 H 1.09000 * 109.58874 * 113.65200 * 15 14 12
43 43 H 1.09001 * 109.49734 * 65.32007 * 16 15 14
44 44 H 1.08997 * 109.49862 * 185.41153 * 16 15 14
45 45 H 1.08999 * 109.46125 * 181.38908 * 17 16 15
46 46 H 1.09005 * 109.45727 * 301.35524 * 17 16 15
47 47 H 0.96995 * 120.00490 * 179.97438 * 23 22 20
48 48 H 1.09001 * 109.58615 * 246.20146 * 28 14 12
49 49 H 1.08992 * 109.58915 * 6.63468 * 28 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1902 1.2017 0.0000
4 6 3.5764 1.1906 0.0052
5 6 4.2266 -0.0342 -0.0005
6 6 3.4766 -1.1948 -0.0054
7 6 4.1727 -2.5313 -0.0121
8 7 4.2919 -3.0268 1.3613
9 6 5.4725 -2.6913 2.1612
10 6 3.3154 -3.7912 1.8892
11 8 2.2970 -3.9937 1.2612
12 6 3.4869 -4.3895 3.2479
13 8 3.2047 -3.7434 4.2355
14 7 3.9548 -5.6469 3.3764
15 6 4.1942 -6.4813 2.1910
16 6 3.4446 -7.8064 2.3613
17 6 3.8605 -8.4572 3.6825
18 6 3.4858 -7.5371 4.8465
19 1 2.4117 -7.3517 4.8324
20 6 3.8665 -8.1930 6.1489
21 1 4.7537 -8.8065 6.2054
22 6 3.0824 -8.0100 7.2680
23 7 3.4636 -8.5034 8.4259
24 14 1.4784 -7.0612 7.1397
25 1 0.3557 -8.0119 6.9375
26 1 1.2567 -6.2923 8.3907
27 1 1.5477 -6.1252 5.9889
28 6 4.2412 -6.2070 4.7042
29 7 2.1587 -1.1462 -0.0052
30 1 -0.3634 -0.0048 1.0277
31 1 -0.3633 -0.8876 -0.5180
32 1 -0.3633 0.8924 -0.5097
33 1 1.6508 2.1373 -0.0005
34 1 4.1366 2.1139 0.0088
35 1 5.3057 -0.0805 -0.0007
36 1 3.5937 -3.2396 -0.6048
37 1 5.1664 -2.4213 -0.4462
38 1 5.2592 -1.8158 2.7744
39 1 5.7261 -3.5331 2.8055
40 1 6.3108 -2.4753 1.4988
41 1 3.8294 -5.9667 1.3021
42 1 5.2622 -6.6738 2.0892
43 1 2.3709 -7.6185 2.3706
44 1 3.6906 -8.4725 1.5343
45 1 3.3471 -9.4122 3.7944
46 1 4.9380 -8.6221 3.6826
47 1 2.9122 -8.3744 9.2134
48 1 5.3128 -6.3797 4.8045
49 1 3.9074 -5.5114 5.4739
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001327405011.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:56:23
Heat of formation + Delta-G solvation = -29.120612 kcal
Electronic energy + Delta-G solvation = -30964.556740 eV
Core-core repulsion = 26891.758674 eV
Total energy + Delta-G solvation = -4072.798066 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-40.93747 -40.30462 -38.60713 -36.95924 -35.99621 -33.45668 -33.30883 -32.78785
-31.93721 -30.57020 -29.14373 -27.44966 -26.93655 -25.37293 -25.20680 -23.14132
-22.41873 -21.91811 -21.64691 -19.50678 -18.54251 -17.71597 -16.98915 -16.82111
-16.64983 -16.55217 -16.39841 -15.71696 -14.98451 -14.70868 -14.55189 -14.35580
-14.06626 -13.89230 -13.58111 -13.39810 -13.35881 -13.18944 -12.98177 -12.79012
-12.68011 -12.59736 -12.49566 -12.41164 -12.29929 -12.07967 -11.98155 -11.29591
-11.21936 -11.04011 -10.78246 -10.52771 -10.11276 -10.09593 -9.67931 -9.66635
-9.57498 -9.29948 -9.15307 -9.01709 -8.93220 -8.59613 -8.20069 -6.12957
-4.14241 0.75810 1.03683 2.27503 2.33897 2.79771 3.32568 3.42818
3.45099 3.53021 3.66249 3.90322 4.28040 4.41334 4.42966 4.46213
4.73296 4.79545 4.84892 4.97162 5.11140 5.14000 5.18987 5.25375
5.29306 5.32550 5.33440 5.41578 5.48356 5.51346 5.53115 5.78022
5.81363 5.86226 5.91194 6.00676 6.11745 6.13538 6.21836 6.41071
6.44172 6.51928 6.62340 6.73639 6.79203 6.95748 7.23878 7.33460
7.61629 7.70080 7.84471 7.85556 8.19693 8.46318 8.91947 9.50752
10.99114
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.016477 B = 0.002861 C = 0.002708
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1698.981351 B = 9783.211654 C =10335.887200
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.105 4.105
2 C 0.129 3.871
3 C -0.173 4.173
4 C -0.075 4.075
5 C -0.168 4.168
6 C 0.111 3.889
7 C 0.167 3.833
8 N -0.603 5.603
9 C 0.076 3.924
10 C 0.517 3.483
11 O -0.491 6.491
12 C 0.508 3.492
13 O -0.520 6.520
14 N -0.590 5.590
15 C 0.109 3.891
16 C -0.137 4.137
17 C -0.104 4.104
18 C 0.002 3.998
19 H 0.040 0.960
20 C -0.514 4.514
21 H 0.076 0.924
22 C 0.077 3.923
23 N -0.894 5.894
24 Si 0.868 3.132
25 H -0.277 1.277
26 H -0.286 1.286
27 H -0.256 1.256
28 C 0.113 3.887
29 N -0.455 5.455
30 H 0.079 0.921
31 H 0.079 0.921
32 H 0.073 0.927
33 H 0.133 0.867
34 H 0.134 0.866
35 H 0.134 0.866
36 H 0.103 0.897
37 H 0.100 0.900
38 H 0.061 0.939
39 H 0.075 0.925
40 H 0.080 0.920
41 H 0.071 0.929
42 H 0.071 0.929
43 H 0.063 0.937
44 H 0.067 0.933
45 H 0.062 0.938
46 H 0.055 0.945
47 H 0.265 0.735
48 H 0.068 0.932
49 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.488 17.294 -21.321 27.818
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C -0.009 4.009
3 C -0.193 4.193
4 C -0.101 4.101
5 C -0.189 4.189
6 C -0.028 4.028
7 C 0.044 3.956
8 N -0.339 5.339
9 C -0.067 4.067
10 C 0.300 3.700
11 O -0.362 6.362
12 C 0.290 3.710
13 O -0.395 6.395
14 N -0.324 5.324
15 C -0.014 4.014
16 C -0.175 4.175
17 C -0.142 4.142
18 C -0.018 4.018
19 H 0.058 0.942
20 C -0.552 4.552
21 H 0.094 0.906
22 C -0.126 4.126
23 N -0.531 5.531
24 Si 0.694 3.306
25 H -0.203 1.203
26 H -0.213 1.213
27 H -0.180 1.180
28 C -0.008 4.008
29 N -0.165 5.165
30 H 0.097 0.903
31 H 0.098 0.902
32 H 0.092 0.908
33 H 0.151 0.849
34 H 0.152 0.848
35 H 0.152 0.848
36 H 0.121 0.879
37 H 0.118 0.882
38 H 0.079 0.921
39 H 0.094 0.906
40 H 0.099 0.901
41 H 0.089 0.911
42 H 0.090 0.910
43 H 0.082 0.918
44 H 0.086 0.914
45 H 0.080 0.920
46 H 0.073 0.927
47 H 0.075 0.925
48 H 0.087 0.913
49 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges 3.254 16.692 -20.907 26.950
hybrid contribution -0.323 1.481 0.205 1.529
sum 2.931 18.172 -20.703 27.702
Atomic orbital electron populations
1.20730 0.88786 1.03374 1.03355 1.21389 0.97241 0.88158 0.94115
1.21998 0.95062 0.99302 1.02929 1.21546 0.94476 0.98224 0.95845
1.21933 1.01171 0.92942 1.02814 1.21597 0.89896 0.95602 0.95717
1.20354 1.00399 0.91577 0.83303 1.47805 1.20836 1.51166 1.14119
1.21908 0.86718 1.02052 0.95983 1.20594 0.83692 0.79201 0.86546
1.90825 1.26336 1.59409 1.59660 1.20114 0.78798 0.83121 0.89007
1.90792 1.49285 1.61628 1.37803 1.48598 1.62027 1.11781 1.09992
1.21750 1.00343 0.92511 0.86819 1.21989 1.00562 0.95332 0.99585
1.21587 1.00565 0.99257 0.92802 1.19638 0.96377 0.90697 0.95093
0.94195 1.20871 1.11916 1.30625 0.91758 0.90580 1.25063 0.97711
0.94689 0.95149 1.69898 1.38159 1.45522 0.99535 0.86960 0.84319
0.80915 0.78359 1.20298 1.21257 1.18031 1.22698 1.00340 0.97435
0.80289 1.67442 1.09239 1.29177 1.10614 0.90274 0.90230 0.90818
0.84887 0.84791 0.84840 0.87879 0.88232 0.92074 0.90630 0.90101
0.91053 0.91040 0.91811 0.91445 0.91971 0.92659 0.92506 0.91335
0.89844
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.99 10.17 36.01 0.37 -0.62 16
2 C 0.13 1.50 6.78 -82.59 -0.56 0.94 16
3 C -0.17 -1.56 9.74 -39.44 -0.38 -1.95 16
4 C -0.08 -0.61 10.18 -39.28 -0.40 -1.01 16
5 C -0.17 -1.46 9.72 -39.44 -0.38 -1.85 16
6 C 0.11 1.28 6.36 -82.59 -0.53 0.76 16
7 C 0.17 1.69 5.72 -5.20 -0.03 1.66 16
8 N -0.60 -7.51 2.86 -183.47 -0.52 -8.04 16
9 C 0.08 0.74 10.28 59.85 0.61 1.35 16
10 C 0.52 8.81 5.59 -11.59 -0.06 8.74 16
11 O -0.49 -9.61 16.51 5.50 0.09 -9.52 16
12 C 0.51 9.92 5.69 -11.58 -0.07 9.86 16
13 O -0.52 -12.03 16.52 5.50 0.09 -11.94 16
14 N -0.59 -10.87 2.97 -173.02 -0.51 -11.38 16
15 C 0.11 1.60 6.32 -3.71 -0.02 1.58 16
16 C -0.14 -2.13 6.08 -26.61 -0.16 -2.29 16
17 C -0.10 -1.95 5.15 -26.69 -0.14 -2.09 16
18 C 0.00 0.04 1.90 -91.43 -0.17 -0.14 16
19 H 0.04 0.99 5.07 -51.92 -0.26 0.73 16
20 C -0.51 -13.89 8.86 -34.44 -0.31 -14.19 16
21 H 0.08 2.20 8.06 -52.48 -0.42 1.77 16
22 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16
23 N -0.89 -27.01 13.96 55.43 0.77 -26.24 16
24 Si 0.87 22.37 27.31 -169.99 -4.64 17.73 16
25 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16
26 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16
27 H -0.26 -6.73 6.37 56.52 0.36 -6.36 16
28 C 0.11 2.38 5.74 -3.49 -0.02 2.36 16
29 N -0.45 -6.36 10.19 -5.74 -0.06 -6.41 16
30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16
31 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16
32 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16
33 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16
34 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16
35 H 0.13 0.76 8.06 -52.48 -0.42 0.33 16
36 H 0.10 1.17 7.50 -51.93 -0.39 0.78 16
37 H 0.10 0.58 7.76 -51.93 -0.40 0.18 16
38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
39 H 0.08 0.82 6.99 -51.93 -0.36 0.45 16
40 H 0.08 0.46 7.83 -51.93 -0.41 0.05 16
41 H 0.07 0.99 6.22 -51.93 -0.32 0.67 16
42 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16
43 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16
44 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16
45 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16
46 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16
47 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16
48 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16
49 H 0.08 1.99 7.00 -51.93 -0.36 1.63 16
LS Contribution 400.88 15.07 6.04 6.04
Total: -1.00 -36.52 400.88 -8.70 -45.21
By element:
Atomic # 1 Polarization: 6.92 SS G_CDS: -7.60 Total: -0.68 kcal
Atomic # 6 Polarization: 7.57 SS G_CDS: -2.35 Total: 5.22 kcal
Atomic # 7 Polarization: -51.75 SS G_CDS: -0.32 Total: -52.07 kcal
Atomic # 8 Polarization: -21.64 SS G_CDS: 0.18 Total: -21.45 kcal
Atomic # 14 Polarization: 22.37 SS G_CDS: -4.64 Total: 17.73 kcal
Total LS contribution 6.04 Total: 6.04 kcal
Total: -36.52 -8.70 -45.21 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001327405011.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 16.092 kcal
(2) G-P(sol) polarization free energy of solvation -36.517 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.425 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.213 kcal
(6) G-S(sol) free energy of system = (1) + (5) -29.121 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds