Wall clock time and date at job start Wed Apr 1 2020 02:56:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 C 1.38230 * 119.62078 * 2 1
4 4 C 1.38627 * 119.16341 * 179.75507 * 3 2 1
5 5 C 1.38672 * 118.41699 * 0.50111 * 4 3 2
6 6 C 1.38181 * 119.16526 * 359.73212 * 5 4 3
7 7 C 1.50697 * 119.61513 * 179.97438 * 6 5 4
8 8 N 1.46497 * 109.47109 * 95.02816 * 7 6 5
9 9 C 1.46498 * 119.99984 * 269.99772 * 8 7 6
10 10 C 1.34778 * 120.00431 * 89.99459 * 8 7 6
11 11 O 1.21345 * 120.00016 * 354.97133 * 10 8 7
12 12 C 1.49448 * 120.00137 * 174.96654 * 10 8 7
13 13 O 1.21345 * 120.00291 * 85.04144 * 12 10 8
14 14 N 1.34781 * 120.00094 * 265.03534 * 12 10 8
15 15 C 1.46924 * 120.62790 * 354.85123 * 14 12 10
16 16 C 1.53195 * 108.77174 * 233.57655 * 15 14 12
17 17 C 1.53039 * 109.31773 * 305.37043 * 16 15 14
18 18 C 1.53035 * 109.53939 * 61.35668 * 17 16 15
19 19 H 1.09010 * 109.49416 * 58.59428 * 18 17 16
20 20 C 1.50703 * 109.50053 * 178.68358 * 18 17 16
21 21 H 1.08008 * 119.99295 * 34.89078 * 20 18 17
22 22 C 1.37869 * 120.00486 * 214.89221 * 20 18 17
23 23 N 1.31512 * 120.00346 * 184.79956 * 22 20 18
24 24 Si 1.86800 * 119.99920 * 4.79969 * 22 20 18
25 25 H 1.48501 * 109.47397 * 94.76528 * 24 22 20
26 26 H 1.48503 * 109.47160 * 214.76158 * 24 22 20
27 27 H 1.48503 * 109.47045 * 334.76368 * 24 22 20
28 28 C 1.46925 * 120.62776 * 174.56118 * 14 12 10
29 29 N 1.31853 * 119.62077 * 180.26142 * 2 1 3
30 30 H 1.09003 * 109.47403 * 269.73411 * 1 2 3
31 31 H 1.08997 * 109.46851 * 149.73152 * 1 2 3
32 32 H 1.09000 * 109.47018 * 29.73355 * 1 2 3
33 33 H 1.08003 * 120.41544 * 359.96859 * 3 2 1
34 34 H 1.07993 * 120.78721 * 180.21303 * 4 3 2
35 35 H 1.08004 * 120.41513 * 179.75704 * 5 4 3
36 36 H 1.09004 * 109.47228 * 215.02311 * 7 6 5
37 37 H 1.08998 * 109.47754 * 335.02670 * 7 6 5
38 38 H 1.08997 * 109.47537 * 95.14304 * 9 8 7
39 39 H 1.09001 * 109.47599 * 215.14398 * 9 8 7
40 40 H 1.09002 * 109.47426 * 335.14577 * 9 8 7
41 41 H 1.08995 * 109.59223 * 353.36972 * 15 14 12
42 42 H 1.09000 * 109.58874 * 113.65200 * 15 14 12
43 43 H 1.09001 * 109.49734 * 65.32007 * 16 15 14
44 44 H 1.08997 * 109.49862 * 185.41153 * 16 15 14
45 45 H 1.08999 * 109.46125 * 181.38908 * 17 16 15
46 46 H 1.09005 * 109.45727 * 301.35524 * 17 16 15
47 47 H 0.96995 * 120.00490 * 179.97438 * 23 22 20
48 48 H 1.09001 * 109.58615 * 246.20146 * 28 14 12
49 49 H 1.08992 * 109.58915 * 6.63468 * 28 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1902 1.2017 0.0000
4 6 3.5764 1.1906 0.0052
5 6 4.2266 -0.0342 -0.0005
6 6 3.4766 -1.1948 -0.0054
7 6 4.1727 -2.5313 -0.0121
8 7 4.2919 -3.0268 1.3613
9 6 5.4725 -2.6913 2.1612
10 6 3.3154 -3.7912 1.8892
11 8 2.2970 -3.9937 1.2612
12 6 3.4869 -4.3895 3.2479
13 8 3.2047 -3.7434 4.2355
14 7 3.9548 -5.6469 3.3764
15 6 4.1942 -6.4813 2.1910
16 6 3.4446 -7.8064 2.3613
17 6 3.8605 -8.4572 3.6825
18 6 3.4858 -7.5371 4.8465
19 1 2.4117 -7.3517 4.8324
20 6 3.8665 -8.1930 6.1489
21 1 4.7537 -8.8065 6.2054
22 6 3.0824 -8.0100 7.2680
23 7 3.4636 -8.5034 8.4259
24 14 1.4784 -7.0612 7.1397
25 1 0.3557 -8.0119 6.9375
26 1 1.2567 -6.2923 8.3907
27 1 1.5477 -6.1252 5.9889
28 6 4.2412 -6.2070 4.7042
29 7 2.1587 -1.1462 -0.0052
30 1 -0.3634 -0.0048 1.0277
31 1 -0.3633 -0.8876 -0.5180
32 1 -0.3633 0.8924 -0.5097
33 1 1.6508 2.1373 -0.0005
34 1 4.1366 2.1139 0.0088
35 1 5.3057 -0.0805 -0.0007
36 1 3.5937 -3.2396 -0.6048
37 1 5.1664 -2.4213 -0.4462
38 1 5.2592 -1.8158 2.7744
39 1 5.7261 -3.5331 2.8055
40 1 6.3108 -2.4753 1.4988
41 1 3.8294 -5.9667 1.3021
42 1 5.2622 -6.6738 2.0892
43 1 2.3709 -7.6185 2.3706
44 1 3.6906 -8.4725 1.5343
45 1 3.3471 -9.4122 3.7944
46 1 4.9380 -8.6221 3.6826
47 1 2.9122 -8.3744 9.2134
48 1 5.3128 -6.3797 4.8045
49 1 3.9074 -5.5114 5.4739
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001327405011.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:56:22
Heat of formation + Delta-G solvation = -54.356586 kcal
Electronic energy + Delta-G solvation = -30965.651054 eV
Core-core repulsion = 26891.758674 eV
Total energy + Delta-G solvation = -4073.892380 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-42.14295 -41.22063 -39.94965 -38.55043 -37.06148 -35.32770 -34.09646 -33.69513
-33.46649 -32.24988 -29.98080 -28.23396 -28.13227 -27.07868 -26.50066 -24.25976
-23.48283 -23.15004 -22.67283 -21.06989 -19.91857 -19.19982 -18.70428 -18.09479
-17.78721 -17.44285 -17.26104 -16.66673 -16.46885 -16.08237 -15.85385 -15.45599
-15.36772 -15.30358 -15.03174 -14.78482 -14.46668 -14.27858 -14.12162 -14.04928
-13.91941 -13.84118 -13.48982 -13.34424 -13.13167 -13.09658 -12.90535 -12.82589
-12.78744 -12.63708 -12.57956 -12.04053 -11.80203 -11.66472 -11.29166 -11.07710
-10.83452 -10.75808 -10.65011 -10.47122 -9.95163 -9.79882 -9.76565 -8.37241
-6.38013 0.04927 0.36908 0.94060 1.04535 1.21358 1.28903 1.40233
1.42492 2.25646 2.28314 2.85365 3.00884 3.08569 3.23768 3.72166
3.85464 3.87215 4.05706 4.08998 4.13458 4.18447 4.19912 4.34571
4.41279 4.42918 4.49293 4.54482 4.60419 4.65033 4.66988 4.67217
4.67963 4.80373 4.82108 4.87655 4.95606 5.01353 5.12355 5.18567
5.20412 5.23879 5.28163 5.28406 5.55600 5.61790 5.66152 5.80175
5.87544 6.12305 6.27076 6.63755 6.67152 6.73885 7.13409 7.28731
8.78751
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.016477 B = 0.002861 C = 0.002708
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1698.981351 B = 9783.211654 C =10335.887200
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.103 4.103
2 C 0.095 3.905
3 C -0.172 4.172
4 C -0.077 4.077
5 C -0.159 4.159
6 C 0.082 3.918
7 C 0.165 3.835
8 N -0.586 5.586
9 C 0.070 3.930
10 C 0.521 3.479
11 O -0.527 6.527
12 C 0.503 3.497
13 O -0.568 6.568
14 N -0.587 5.587
15 C 0.106 3.894
16 C -0.130 4.130
17 C -0.099 4.099
18 C -0.003 4.003
19 H 0.017 0.983
20 C -0.503 4.503
21 H 0.054 0.946
22 C 0.029 3.971
23 N -0.936 5.936
24 Si 0.920 3.080
25 H -0.267 1.267
26 H -0.287 1.287
27 H -0.270 1.270
28 C 0.123 3.877
29 N -0.504 5.504
30 H 0.069 0.931
31 H 0.061 0.939
32 H 0.102 0.898
33 H 0.158 0.842
34 H 0.169 0.831
35 H 0.171 0.829
36 H 0.085 0.915
37 H 0.154 0.846
38 H 0.053 0.947
39 H 0.062 0.938
40 H 0.134 0.866
41 H 0.084 0.916
42 H 0.109 0.891
43 H 0.043 0.957
44 H 0.110 0.890
45 H 0.056 0.944
46 H 0.071 0.929
47 H 0.266 0.734
48 H 0.086 0.914
49 H 0.048 0.952
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.833 19.119 -24.490 31.812
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C -0.042 4.042
3 C -0.192 4.192
4 C -0.103 4.103
5 C -0.179 4.179
6 C -0.057 4.057
7 C 0.044 3.956
8 N -0.320 5.320
9 C -0.072 4.072
10 C 0.303 3.697
11 O -0.402 6.402
12 C 0.286 3.714
13 O -0.447 6.447
14 N -0.319 5.319
15 C -0.015 4.015
16 C -0.168 4.168
17 C -0.137 4.137
18 C -0.023 4.023
19 H 0.036 0.964
20 C -0.541 4.541
21 H 0.072 0.928
22 C -0.170 4.170
23 N -0.576 5.576
24 Si 0.746 3.254
25 H -0.192 1.192
26 H -0.213 1.213
27 H -0.195 1.195
28 C 0.002 3.998
29 N -0.215 5.215
30 H 0.088 0.912
31 H 0.081 0.919
32 H 0.121 0.879
33 H 0.176 0.824
34 H 0.187 0.813
35 H 0.189 0.811
36 H 0.103 0.897
37 H 0.171 0.829
38 H 0.072 0.928
39 H 0.081 0.919
40 H 0.153 0.847
41 H 0.102 0.898
42 H 0.127 0.873
43 H 0.062 0.938
44 H 0.128 0.872
45 H 0.074 0.926
46 H 0.089 0.911
47 H 0.076 0.924
48 H 0.104 0.896
49 H 0.066 0.934
Dipole moment (debyes) X Y Z Total
from point charges 5.634 18.518 -24.129 30.933
hybrid contribution -0.960 0.962 1.127 1.766
sum 4.674 19.479 -23.002 30.502
Atomic orbital electron populations
1.20747 0.88422 1.03960 1.02883 1.21742 0.98024 0.88851 0.95628
1.22322 0.96021 0.99263 1.01590 1.22043 0.94257 0.99561 0.94443
1.22326 1.02888 0.92023 1.00709 1.21897 0.89575 0.97057 0.97160
1.20701 1.02935 0.90672 0.81329 1.47852 1.20016 1.49022 1.15126
1.22177 0.87041 1.01130 0.96804 1.20098 0.84316 0.80115 0.85162
1.90817 1.27878 1.61357 1.60109 1.20711 0.77725 0.83143 0.89845
1.90756 1.51349 1.62881 1.39739 1.48588 1.61317 1.11981 1.10057
1.22074 1.02612 0.91370 0.85479 1.21951 0.99469 0.96306 0.99040
1.21475 1.01484 0.98063 0.92669 1.19635 0.95244 0.92325 0.95075
0.96449 1.21156 1.10414 1.29249 0.93307 0.92788 1.25646 1.00216
0.95885 0.95205 1.69989 1.39534 1.47860 1.00248 0.86144 0.82065
0.79700 0.77446 1.19225 1.21336 1.19498 1.22213 1.00749 0.95579
0.81273 1.67370 1.11076 1.30867 1.12221 0.91217 0.91949 0.87937
0.82397 0.81304 0.81112 0.89666 0.82882 0.92849 0.91884 0.84739
0.89753 0.87265 0.93772 0.87172 0.92563 0.91080 0.92431 0.89559
0.93350
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -1.99 10.17 71.24 0.72 -1.27 16
2 C 0.10 2.19 6.78 42.55 0.29 2.48 16
3 C -0.17 -2.75 9.74 22.36 0.22 -2.53 16
4 C -0.08 -0.97 10.18 22.47 0.23 -0.74 16
5 C -0.16 -2.16 9.72 22.36 0.22 -1.94 16
6 C 0.08 1.73 6.36 42.54 0.27 2.00 16
7 C 0.17 2.88 5.72 85.63 0.49 3.37 16
8 N -0.59 -13.31 2.86 -852.75 -2.44 -15.74 16
9 C 0.07 1.13 10.28 127.77 1.31 2.44 16
10 C 0.52 17.54 5.59 87.27 0.49 18.02 16
11 O -0.53 -20.93 16.51 -3.23 -0.05 -20.99 16
12 C 0.50 19.80 5.69 87.27 0.50 20.30 16
13 O -0.57 -27.32 16.52 -3.23 -0.05 -27.37 16
14 N -0.59 -21.20 2.97 -819.66 -2.43 -23.63 16
15 C 0.11 2.81 6.32 86.36 0.55 3.36 16
16 C -0.13 -3.70 6.08 30.67 0.19 -3.52 16
17 C -0.10 -3.56 5.15 30.62 0.16 -3.40 16
18 C 0.00 -0.14 1.90 -11.32 -0.02 -0.16 16
19 H 0.02 0.88 5.07 -2.38 -0.01 0.86 16
20 C -0.50 -27.74 8.86 25.60 0.23 -27.51 16
21 H 0.05 3.18 8.06 -2.91 -0.02 3.15 16
22 C 0.03 1.71 5.47 84.65 0.46 2.18 16
23 N -0.94 -58.17 13.96 21.44 0.30 -57.87 16
24 Si 0.92 48.06 27.31 68.60 1.87 49.93 16
25 H -0.27 -13.37 7.11 99.48 0.71 -12.66 16
26 H -0.29 -14.90 7.11 99.48 0.71 -14.19 16
27 H -0.27 -14.60 6.37 99.48 0.63 -13.97 16
28 C 0.12 5.25 5.74 86.51 0.50 5.74 16
29 N -0.50 -14.11 10.19 -172.08 -1.75 -15.87 16
30 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16
31 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16
32 H 0.10 1.26 8.08 -2.39 -0.02 1.24 16
33 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16
34 H 0.17 0.88 8.06 -2.91 -0.02 0.86 16
35 H 0.17 0.91 8.06 -2.91 -0.02 0.89 16
36 H 0.08 1.82 7.50 -2.39 -0.02 1.80 16
37 H 0.15 0.95 7.76 -2.39 -0.02 0.93 16
38 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16
39 H 0.06 1.22 6.99 -2.39 -0.02 1.20 16
40 H 0.13 0.74 7.83 -2.39 -0.02 0.72 16
41 H 0.08 2.11 6.22 -2.39 -0.01 2.10 16
42 H 0.11 2.16 8.14 -2.39 -0.02 2.15 16
43 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16
44 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16
45 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16
46 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16
47 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16
48 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16
49 H 0.05 2.39 7.00 -2.39 -0.02 2.38 16
Total: -1.00 -86.86 400.88 3.11 -83.75
By element:
Atomic # 1 Polarization: 8.09 SS G_CDS: 0.87 Total: 8.96 kcal
Atomic # 6 Polarization: 12.03 SS G_CDS: 6.79 Total: 18.82 kcal
Atomic # 7 Polarization: -106.79 SS G_CDS: -6.32 Total: -113.11 kcal
Atomic # 8 Polarization: -48.25 SS G_CDS: -0.11 Total: -48.36 kcal
Atomic # 14 Polarization: 48.06 SS G_CDS: 1.87 Total: 49.93 kcal
Total: -86.86 3.11 -83.75 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001327405011.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 29.394 kcal
(2) G-P(sol) polarization free energy of solvation -86.859 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.465 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.108 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.751 kcal
(6) G-S(sol) free energy of system = (1) + (5) -54.357 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds