Wall clock time and date at job start Wed Apr 1 2020 04:47:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50707 * 1
3 3 C 1.38672 * 120.41731 * 2 1
4 4 C 1.38632 * 118.41713 * 179.97438 * 3 2 1
5 5 C 1.38226 * 119.16238 * 0.02562 * 4 3 2
6 6 C 1.50693 * 119.61879 * 179.97438 * 5 4 3
7 7 N 1.46502 * 109.47256 * 95.00057 * 6 5 4
8 8 C 1.34782 * 120.00166 * 180.02562 * 7 6 5
9 9 O 1.21350 * 119.99528 * 359.97438 * 8 7 6
10 10 C 1.49446 * 120.00084 * 179.97438 * 8 7 6
11 11 O 1.21356 * 119.99803 * 353.37756 * 10 8 7
12 12 N 1.34768 * 120.00057 * 173.37736 * 10 8 7
13 13 C 1.46923 * 120.63140 * 353.06161 * 12 10 8
14 14 C 1.53197 * 108.77603 * 126.41596 * 13 12 10
15 15 C 1.53036 * 109.34037 * 54.62030 * 14 13 12
16 16 C 1.53043 * 109.53781 * 298.68543 * 15 14 13
17 17 H 1.09000 * 109.49772 * 301.34791 * 16 15 14
18 18 C 1.50699 * 109.49861 * 181.28187 * 16 15 14
19 19 H 1.08009 * 119.99826 * 0.06421 * 18 16 15
20 20 C 1.37874 * 120.00391 * 180.34183 * 18 16 15
21 21 N 1.31511 * 119.99935 * 359.72505 * 20 18 16
22 22 Si 1.86803 * 120.00371 * 179.72468 * 20 18 16
23 23 H 1.48501 * 109.46987 * 359.97438 * 22 20 18
24 24 H 1.48502 * 109.47049 * 119.99668 * 22 20 18
25 25 H 1.48495 * 109.47162 * 239.99991 * 22 20 18
26 26 C 1.46927 * 120.63303 * 173.08900 * 12 10 8
27 27 N 1.31862 * 120.76269 * 0.25083 * 5 4 3
28 28 C 1.31885 * 121.72543 * 359.48045 * 27 5 4
29 29 C 1.50696 * 119.61935 * 180.27039 * 28 27 5
30 30 H 1.08996 * 109.46672 * 89.99920 * 1 2 3
31 31 H 1.08993 * 109.47029 * 210.00410 * 1 2 3
32 32 H 1.09003 * 109.46643 * 330.00469 * 1 2 3
33 33 H 1.07997 * 120.79287 * 0.02562 * 3 2 1
34 34 H 1.07994 * 120.41750 * 179.97438 * 4 3 2
35 35 H 1.09007 * 109.47437 * 334.99844 * 6 5 4
36 36 H 1.09010 * 109.47462 * 214.99866 * 6 5 4
37 37 H 0.96996 * 120.00059 * 359.97438 * 7 6 5
38 38 H 1.08998 * 109.59171 * 246.19792 * 13 12 10
39 39 H 1.09003 * 109.58922 * 6.48999 * 13 12 10
40 40 H 1.08995 * 109.50150 * 174.58993 * 14 13 12
41 41 H 1.09009 * 109.49617 * 294.68452 * 14 13 12
42 42 H 1.08997 * 109.49188 * 178.64856 * 15 14 13
43 43 H 1.09001 * 109.43006 * 58.68768 * 15 14 13
44 44 H 0.97000 * 120.00590 * 180.02562 * 21 20 18
45 45 H 1.09003 * 109.59192 * 113.79627 * 26 12 10
46 46 H 1.08998 * 109.70190 * 353.44355 * 26 12 10
47 47 H 1.09001 * 109.46956 * 270.25095 * 29 28 27
48 48 H 1.09002 * 109.47115 * 30.24420 * 29 28 27
49 49 H 1.08997 * 109.47662 * 150.24684 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.2092 1.1959 0.0000
4 6 3.5946 1.1475 0.0005
5 6 4.2257 -0.0824 0.0005
6 6 5.7312 -0.1469 0.0005
7 7 6.2140 -0.2882 1.3765
8 6 7.5370 -0.3659 1.6219
9 8 8.3282 -0.3194 0.7030
10 6 8.0294 -0.5094 3.0256
11 8 7.2498 -0.4354 3.9526
12 7 9.3393 -0.7210 3.2618
13 6 10.2705 -0.9640 2.1517
14 6 11.4327 0.0286 2.2568
15 6 12.0678 -0.0798 3.6449
16 6 11.0298 0.2760 4.7118
17 1 10.6613 1.2870 4.5380
18 6 11.6646 0.1996 6.0764
19 1 12.7049 -0.0742 6.1735
20 6 10.9161 0.4737 7.2014
21 7 9.6494 0.8071 7.0832
22 14 11.7010 0.3715 8.8934
23 1 13.1262 -0.0218 8.7550
24 1 11.6149 1.6958 9.5598
25 1 10.9857 -0.6413 9.7105
26 6 9.8631 -0.7137 4.6345
27 7 3.5254 -1.1997 -0.0050
28 6 2.2066 -1.1917 -0.0004
29 6 1.4539 -2.4972 -0.0009
30 1 -0.3632 0.0000 -1.0277
31 1 -0.3633 -0.8899 0.5139
32 1 -0.3633 0.8901 0.5138
33 1 1.6890 2.1423 0.0004
34 1 4.1736 2.0591 0.0001
35 1 6.1342 0.7680 -0.4338
36 1 6.0582 -1.0036 -0.5889
37 1 5.5815 -0.3250 2.1110
38 1 10.6535 -1.9827 2.2122
39 1 9.7525 -0.8241 1.2029
40 1 12.1786 -0.2027 1.4964
41 1 11.0605 1.0419 2.1055
42 1 12.9102 0.6084 3.7142
43 1 12.4180 -1.0995 3.8048
44 1 9.1228 1.0003 7.8745
45 1 10.2128 -1.7121 4.8976
46 1 9.0779 -0.4078 5.3259
47 1 1.2728 -2.8118 -1.0287
48 1 2.0433 -3.2566 0.5130
49 1 0.5012 -2.3676 0.5126
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001328510829.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:47:24
Heat of formation + Delta-G solvation = -28.110354 kcal
Electronic energy + Delta-G solvation = -29878.088708 eV
Core-core repulsion = 25805.334450 eV
Total energy + Delta-G solvation = -4072.754258 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-40.94695 -40.35018 -38.27584 -36.83961 -35.72936 -33.79649 -33.35946 -33.10862
-31.69555 -29.71807 -29.16611 -28.71652 -26.15095 -25.07443 -24.75731 -22.90097
-22.36627 -21.76248 -21.44691 -20.21365 -18.83062 -17.47798 -17.05799 -16.64329
-16.35814 -15.91684 -15.67208 -15.33580 -15.15328 -15.02799 -14.55381 -14.44286
-14.12945 -13.75401 -13.61364 -13.33469 -13.25069 -13.20705 -12.97201 -12.91039
-12.67479 -12.57569 -12.53908 -12.35088 -12.04584 -11.75895 -11.64839 -11.37158
-10.98849 -10.66656 -10.43021 -10.26579 -10.05487 -10.02779 -9.86604 -9.77796
-9.27854 -9.21908 -9.09761 -9.07654 -8.49425 -8.39279 -7.79811 -6.01064
-4.09059 0.62435 0.92298 1.81372 2.69821 3.29985 3.38317 3.41544
3.42372 3.67070 3.75817 4.05887 4.26941 4.33955 4.42753 4.50918
4.55157 4.73718 4.89496 5.06768 5.14166 5.15931 5.25150 5.28454
5.29605 5.36762 5.44755 5.53801 5.67021 5.72502 5.74117 5.79952
5.89053 5.92321 6.07971 6.28478 6.35185 6.41973 6.62365 6.64436
6.77657 6.89373 7.01790 7.07229 7.20463 7.25098 7.61188 7.66162
7.84796 7.96940 8.00592 8.18924 8.36938 8.60446 8.95308 9.56470
11.04556
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.016264 B = 0.002237 C = 0.002068
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1721.208456 B =12512.502881 C =13538.536084
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.114 4.114
2 C -0.132 4.132
3 C -0.075 4.075
4 C -0.152 4.152
5 C 0.105 3.895
6 C 0.172 3.828
7 N -0.697 5.697
8 C 0.515 3.485
9 O -0.514 6.514
10 C 0.496 3.504
11 O -0.524 6.524
12 N -0.566 5.566
13 C 0.050 3.950
14 C -0.127 4.127
15 C -0.113 4.113
16 C 0.040 3.960
17 H 0.029 0.971
18 C -0.517 4.517
19 H 0.060 0.940
20 C 0.061 3.939
21 N -0.883 5.883
22 Si 0.893 3.107
23 H -0.273 1.273
24 H -0.284 1.284
25 H -0.284 1.284
26 C 0.108 3.892
27 N -0.464 5.464
28 C 0.127 3.873
29 C -0.108 4.108
30 H 0.074 0.926
31 H 0.075 0.925
32 H 0.069 0.931
33 H 0.137 0.863
34 H 0.139 0.861
35 H 0.089 0.911
36 H 0.090 0.910
37 H 0.414 0.586
38 H 0.054 0.946
39 H 0.144 0.856
40 H 0.059 0.941
41 H 0.058 0.942
42 H 0.050 0.950
43 H 0.049 0.951
44 H 0.263 0.737
45 H 0.048 0.952
46 H 0.123 0.877
47 H 0.078 0.922
48 H 0.079 0.921
49 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.444 -1.879 -17.802 24.994
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C -0.134 4.134
3 C -0.100 4.100
4 C -0.173 4.173
5 C -0.033 4.033
6 C 0.048 3.952
7 N -0.351 5.351
8 C 0.297 3.703
9 O -0.391 6.391
10 C 0.277 3.723
11 O -0.402 6.402
12 N -0.298 5.298
13 C -0.072 4.072
14 C -0.165 4.165
15 C -0.151 4.151
16 C 0.021 3.979
17 H 0.047 0.953
18 C -0.556 4.556
19 H 0.078 0.922
20 C -0.141 4.141
21 N -0.521 5.521
22 Si 0.721 3.279
23 H -0.198 1.198
24 H -0.210 1.210
25 H -0.210 1.210
26 C -0.012 4.012
27 N -0.174 5.174
28 C -0.011 4.011
29 C -0.165 4.165
30 H 0.093 0.907
31 H 0.094 0.906
32 H 0.088 0.912
33 H 0.155 0.845
34 H 0.157 0.843
35 H 0.107 0.893
36 H 0.108 0.892
37 H 0.250 0.750
38 H 0.073 0.927
39 H 0.160 0.840
40 H 0.077 0.923
41 H 0.077 0.923
42 H 0.069 0.931
43 H 0.067 0.933
44 H 0.073 0.927
45 H 0.066 0.934
46 H 0.141 0.859
47 H 0.097 0.903
48 H 0.097 0.903
49 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges -16.980 -2.570 -17.846 24.767
hybrid contribution -0.216 0.858 1.341 1.607
sum -17.196 -1.711 -16.505 23.897
Atomic orbital electron populations
1.20833 0.90106 1.03440 1.02703 1.20792 0.97664 0.93633 1.01355
1.21505 0.93893 0.98255 0.96379 1.22023 0.95284 0.99020 1.00931
1.21066 0.95720 0.88742 0.97739 1.20159 0.87021 1.03970 0.84001
1.45754 1.07162 1.72898 1.09265 1.20788 0.82467 0.76419 0.90583
1.90305 1.52674 1.49510 1.46631 1.19702 0.84098 0.80422 0.88095
1.90762 1.54503 1.50323 1.44575 1.48427 1.05594 1.65257 1.10539
1.23083 0.92318 0.98282 0.93503 1.21853 0.96931 0.99361 0.98388
1.21664 0.99059 1.00436 0.93926 1.18981 0.90717 0.94928 0.93273
0.95268 1.21140 0.96825 1.47321 0.90324 0.92183 1.25066 0.94913
0.94796 0.99356 1.69880 1.06701 1.45975 1.29499 0.86514 0.79470
0.77669 0.84235 1.19760 1.21008 1.20965 1.22484 1.00628 0.99407
0.78638 1.67318 1.07747 1.30958 1.11369 1.21151 0.89343 0.95210
0.95434 1.20798 0.99390 0.93143 1.03162 0.90737 0.90627 0.91219
0.84502 0.84281 0.89250 0.89162 0.74973 0.92726 0.83985 0.92277
0.92346 0.93085 0.93255 0.92706 0.93388 0.85891 0.90312 0.90254
0.90289
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.56 9.62 36.01 0.35 -0.21 16
2 C -0.13 -1.05 5.90 -104.48 -0.62 -1.67 16
3 C -0.07 -0.58 9.86 -39.28 -0.39 -0.97 16
4 C -0.15 -1.36 9.72 -39.44 -0.38 -1.74 16
5 C 0.11 1.13 6.15 -82.59 -0.51 0.63 16
6 C 0.17 1.94 5.98 -5.20 -0.03 1.91 16
7 N -0.70 -9.72 5.54 -61.90 -0.34 -10.06 16
8 C 0.51 8.74 7.78 -11.58 -0.09 8.65 16
9 O -0.51 -8.88 13.10 5.50 0.07 -8.81 16
10 C 0.50 10.31 7.74 -11.59 -0.09 10.22 16
11 O -0.52 -12.28 15.95 5.49 0.09 -12.19 16
12 N -0.57 -12.12 2.97 -173.27 -0.51 -12.63 16
13 C 0.05 0.91 6.27 -3.71 -0.02 0.89 16
14 C -0.13 -2.30 6.08 -26.61 -0.16 -2.47 16
15 C -0.11 -2.37 5.11 -26.69 -0.14 -2.51 16
16 C 0.04 1.01 2.25 -91.65 -0.21 0.81 16
17 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16
18 C -0.52 -14.15 8.57 -34.44 -0.30 -14.44 16
19 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16
20 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16
21 N -0.88 -25.66 11.38 55.43 0.63 -25.03 16
22 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16
23 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16
24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16
25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16
26 C 0.11 2.68 5.38 -3.71 -0.02 2.66 16
27 N -0.46 -5.39 10.19 -5.74 -0.06 -5.45 16
28 C 0.13 1.21 6.78 -82.59 -0.56 0.65 16
29 C -0.11 -0.73 9.77 36.00 0.35 -0.38 16
30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16
31 H 0.08 0.31 5.96 -51.93 -0.31 0.00 16
32 H 0.07 0.29 8.10 -51.93 -0.42 -0.13 16
33 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16
34 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16
35 H 0.09 0.89 8.04 -51.93 -0.42 0.47 16
36 H 0.09 1.04 8.14 -51.92 -0.42 0.62 16
37 H 0.41 5.84 7.95 -40.82 -0.32 5.51 16
38 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16
39 H 0.14 2.51 3.78 -56.75 -0.21 2.30 16
40 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16
41 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16
42 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16
43 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16
44 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16
45 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16
46 H 0.12 3.48 5.17 -51.93 -0.27 3.21 16
47 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16
48 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16
49 H 0.08 0.38 5.94 -51.93 -0.31 0.07 16
LS Contribution 394.92 15.07 5.95 5.95
Total: -1.00 -32.36 394.92 -9.40 -41.76
By element:
Atomic # 1 Polarization: 13.83 SS G_CDS: -7.30 Total: 6.53 kcal
Atomic # 6 Polarization: 6.53 SS G_CDS: -2.90 Total: 3.62 kcal
Atomic # 7 Polarization: -52.89 SS G_CDS: -0.29 Total: -53.17 kcal
Atomic # 8 Polarization: -21.16 SS G_CDS: 0.16 Total: -21.00 kcal
Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal
Total LS contribution 5.95 Total: 5.95 kcal
Total: -32.36 -9.40 -41.76 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001328510829.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 13.655 kcal
(2) G-P(sol) polarization free energy of solvation -32.364 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.709 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.401 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.765 kcal
(6) G-S(sol) free energy of system = (1) + (5) -28.110 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds