Wall clock time and date at job start Wed Apr 1 2020 04:47:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50707 * 1
3 3 C 1.38672 * 120.41731 * 2 1
4 4 C 1.38632 * 118.41713 * 179.97438 * 3 2 1
5 5 C 1.38226 * 119.16238 * 0.02562 * 4 3 2
6 6 C 1.50693 * 119.61879 * 179.97438 * 5 4 3
7 7 N 1.46502 * 109.47256 * 95.00057 * 6 5 4
8 8 C 1.34782 * 120.00166 * 180.02562 * 7 6 5
9 9 O 1.21350 * 119.99528 * 359.97438 * 8 7 6
10 10 C 1.49446 * 120.00084 * 179.97438 * 8 7 6
11 11 O 1.21356 * 119.99803 * 353.37756 * 10 8 7
12 12 N 1.34768 * 120.00057 * 173.37736 * 10 8 7
13 13 C 1.46923 * 120.63140 * 353.06161 * 12 10 8
14 14 C 1.53197 * 108.77603 * 126.41596 * 13 12 10
15 15 C 1.53036 * 109.34037 * 54.62030 * 14 13 12
16 16 C 1.53043 * 109.53781 * 298.68543 * 15 14 13
17 17 H 1.09000 * 109.49772 * 301.34791 * 16 15 14
18 18 C 1.50699 * 109.49861 * 181.28187 * 16 15 14
19 19 H 1.08009 * 119.99826 * 0.06421 * 18 16 15
20 20 C 1.37874 * 120.00391 * 180.34183 * 18 16 15
21 21 N 1.31511 * 119.99935 * 359.72505 * 20 18 16
22 22 Si 1.86803 * 120.00371 * 179.72468 * 20 18 16
23 23 H 1.48501 * 109.46987 * 359.97438 * 22 20 18
24 24 H 1.48502 * 109.47049 * 119.99668 * 22 20 18
25 25 H 1.48495 * 109.47162 * 239.99991 * 22 20 18
26 26 C 1.46927 * 120.63303 * 173.08900 * 12 10 8
27 27 N 1.31862 * 120.76269 * 0.25083 * 5 4 3
28 28 C 1.31885 * 121.72543 * 359.48045 * 27 5 4
29 29 C 1.50696 * 119.61935 * 180.27039 * 28 27 5
30 30 H 1.08996 * 109.46672 * 89.99920 * 1 2 3
31 31 H 1.08993 * 109.47029 * 210.00410 * 1 2 3
32 32 H 1.09003 * 109.46643 * 330.00469 * 1 2 3
33 33 H 1.07997 * 120.79287 * 0.02562 * 3 2 1
34 34 H 1.07994 * 120.41750 * 179.97438 * 4 3 2
35 35 H 1.09007 * 109.47437 * 334.99844 * 6 5 4
36 36 H 1.09010 * 109.47462 * 214.99866 * 6 5 4
37 37 H 0.96996 * 120.00059 * 359.97438 * 7 6 5
38 38 H 1.08998 * 109.59171 * 246.19792 * 13 12 10
39 39 H 1.09003 * 109.58922 * 6.48999 * 13 12 10
40 40 H 1.08995 * 109.50150 * 174.58993 * 14 13 12
41 41 H 1.09009 * 109.49617 * 294.68452 * 14 13 12
42 42 H 1.08997 * 109.49188 * 178.64856 * 15 14 13
43 43 H 1.09001 * 109.43006 * 58.68768 * 15 14 13
44 44 H 0.97000 * 120.00590 * 180.02562 * 21 20 18
45 45 H 1.09003 * 109.59192 * 113.79627 * 26 12 10
46 46 H 1.08998 * 109.70190 * 353.44355 * 26 12 10
47 47 H 1.09001 * 109.46956 * 270.25095 * 29 28 27
48 48 H 1.09002 * 109.47115 * 30.24420 * 29 28 27
49 49 H 1.08997 * 109.47662 * 150.24684 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.2092 1.1959 0.0000
4 6 3.5946 1.1475 0.0005
5 6 4.2257 -0.0824 0.0005
6 6 5.7312 -0.1469 0.0005
7 7 6.2140 -0.2882 1.3765
8 6 7.5370 -0.3659 1.6219
9 8 8.3282 -0.3194 0.7030
10 6 8.0294 -0.5094 3.0256
11 8 7.2498 -0.4354 3.9526
12 7 9.3393 -0.7210 3.2618
13 6 10.2705 -0.9640 2.1517
14 6 11.4327 0.0286 2.2568
15 6 12.0678 -0.0798 3.6449
16 6 11.0298 0.2760 4.7118
17 1 10.6613 1.2870 4.5380
18 6 11.6646 0.1996 6.0764
19 1 12.7049 -0.0742 6.1735
20 6 10.9161 0.4737 7.2014
21 7 9.6494 0.8071 7.0832
22 14 11.7010 0.3715 8.8934
23 1 13.1262 -0.0218 8.7550
24 1 11.6149 1.6958 9.5598
25 1 10.9857 -0.6413 9.7105
26 6 9.8631 -0.7137 4.6345
27 7 3.5254 -1.1997 -0.0050
28 6 2.2066 -1.1917 -0.0004
29 6 1.4539 -2.4972 -0.0009
30 1 -0.3632 0.0000 -1.0277
31 1 -0.3633 -0.8899 0.5139
32 1 -0.3633 0.8901 0.5138
33 1 1.6890 2.1423 0.0004
34 1 4.1736 2.0591 0.0001
35 1 6.1342 0.7680 -0.4338
36 1 6.0582 -1.0036 -0.5889
37 1 5.5815 -0.3250 2.1110
38 1 10.6535 -1.9827 2.2122
39 1 9.7525 -0.8241 1.2029
40 1 12.1786 -0.2027 1.4964
41 1 11.0605 1.0419 2.1055
42 1 12.9102 0.6084 3.7142
43 1 12.4180 -1.0995 3.8048
44 1 9.1228 1.0003 7.8745
45 1 10.2128 -1.7121 4.8976
46 1 9.0779 -0.4078 5.3259
47 1 1.2728 -2.8118 -1.0287
48 1 2.0433 -3.2566 0.5130
49 1 0.5012 -2.3676 0.5126
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001328510829.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:47:23
Heat of formation + Delta-G solvation = -49.274233 kcal
Electronic energy + Delta-G solvation = -29879.006442 eV
Core-core repulsion = 25805.334450 eV
Total energy + Delta-G solvation = -4073.671993 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-42.04674 -41.43684 -39.79964 -38.55145 -36.76866 -35.25459 -34.48001 -33.97212
-33.44890 -31.57394 -30.02928 -29.28748 -27.64687 -26.85796 -25.84741 -23.96817
-23.50730 -23.34274 -22.22360 -21.70252 -20.50820 -19.01785 -18.27410 -18.01681
-17.74646 -17.17697 -16.87413 -16.74578 -16.50578 -16.01911 -15.71687 -15.58374
-15.47507 -15.36517 -14.78278 -14.67891 -14.46130 -14.33631 -13.91854 -13.86177
-13.71583 -13.57529 -13.53752 -13.46764 -13.22318 -13.00851 -12.90940 -12.87902
-12.46536 -12.30878 -12.17124 -12.16851 -11.71371 -11.63034 -11.16573 -10.98857
-10.69392 -10.56570 -10.51863 -10.40151 -10.08240 -9.67450 -9.56060 -8.12997
-6.29400 -0.07116 0.27366 0.31524 1.35004 1.41613 1.42082 1.53946
2.11936 2.40031 2.47818 2.81680 3.04105 3.15360 3.29401 3.59779
3.80625 3.97102 3.98371 4.15402 4.19400 4.24365 4.34174 4.40442
4.56761 4.58624 4.62353 4.68348 4.70808 4.74227 4.77449 4.80091
4.81638 4.89350 5.05838 5.11342 5.13813 5.15118 5.24106 5.25342
5.26947 5.34805 5.37690 5.50317 5.56615 5.75926 5.83058 5.91014
5.94229 6.28411 6.41761 6.67956 6.82251 6.95435 6.96730 7.40478
8.91285
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.016264 B = 0.002237 C = 0.002068
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1721.208456 B =12512.502881 C =13538.536084
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.113 4.113
2 C -0.130 4.130
3 C -0.079 4.079
4 C -0.155 4.155
5 C 0.083 3.917
6 C 0.175 3.825
7 N -0.682 5.682
8 C 0.525 3.475
9 O -0.515 6.515
10 C 0.487 3.513
11 O -0.560 6.560
12 N -0.573 5.573
13 C 0.048 3.952
14 C -0.120 4.120
15 C -0.107 4.107
16 C 0.039 3.961
17 H -0.010 1.010
18 C -0.534 4.534
19 H 0.063 0.937
20 C 0.010 3.990
21 N -0.916 5.916
22 Si 0.960 3.040
23 H -0.262 1.262
24 H -0.282 1.282
25 H -0.282 1.282
26 C 0.121 3.879
27 N -0.495 5.495
28 C 0.105 3.895
29 C -0.106 4.106
30 H 0.088 0.912
31 H 0.084 0.916
32 H 0.080 0.920
33 H 0.165 0.835
34 H 0.154 0.846
35 H 0.106 0.894
36 H 0.087 0.913
37 H 0.413 0.587
38 H 0.070 0.930
39 H 0.156 0.844
40 H 0.099 0.901
41 H 0.047 0.953
42 H 0.054 0.946
43 H 0.057 0.943
44 H 0.261 0.739
45 H 0.043 0.957
46 H 0.084 0.916
47 H 0.089 0.911
48 H 0.065 0.935
49 H 0.100 0.900
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.012 -1.847 -19.339 26.492
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C -0.132 4.132
3 C -0.105 4.105
4 C -0.175 4.175
5 C -0.054 4.054
6 C 0.053 3.947
7 N -0.333 5.333
8 C 0.307 3.693
9 O -0.393 6.393
10 C 0.269 3.731
11 O -0.440 6.440
12 N -0.304 5.304
13 C -0.072 4.072
14 C -0.158 4.158
15 C -0.144 4.144
16 C 0.019 3.981
17 H 0.008 0.992
18 C -0.572 4.572
19 H 0.081 0.919
20 C -0.190 4.190
21 N -0.554 5.554
22 Si 0.785 3.215
23 H -0.186 1.186
24 H -0.207 1.207
25 H -0.208 1.208
26 C -0.001 4.001
27 N -0.205 5.205
28 C -0.033 4.033
29 C -0.163 4.163
30 H 0.106 0.894
31 H 0.102 0.898
32 H 0.099 0.901
33 H 0.182 0.818
34 H 0.172 0.828
35 H 0.124 0.876
36 H 0.106 0.894
37 H 0.249 0.751
38 H 0.089 0.911
39 H 0.172 0.828
40 H 0.117 0.883
41 H 0.066 0.934
42 H 0.073 0.927
43 H 0.075 0.925
44 H 0.070 0.930
45 H 0.062 0.938
46 H 0.102 0.898
47 H 0.108 0.892
48 H 0.084 0.916
49 H 0.118 0.882
Dipole moment (debyes) X Y Z Total
from point charges -17.548 -2.541 -19.431 26.305
hybrid contribution -0.157 0.861 1.777 1.981
sum -17.704 -1.680 -17.654 25.059
Atomic orbital electron populations
1.20918 0.87772 1.04437 1.03824 1.21179 0.99372 0.93086 0.99591
1.21896 0.93585 0.99490 0.95526 1.22242 0.96177 0.98840 1.00277
1.20998 0.95202 0.89489 0.99723 1.20311 0.87951 1.04590 0.81885
1.45741 1.05827 1.71058 1.10714 1.19901 0.83550 0.77418 0.88466
1.90281 1.52914 1.50374 1.45764 1.20419 0.83645 0.79290 0.89741
1.90733 1.55366 1.51628 1.46261 1.48460 1.06581 1.65351 1.10044
1.23335 0.91935 0.99238 0.92660 1.21820 0.97560 0.98821 0.97564
1.21560 0.97900 1.00779 0.94191 1.18918 0.91995 0.92893 0.94252
0.99223 1.21519 0.97072 1.47010 0.91599 0.91860 1.25900 0.95291
0.94467 1.03305 1.70057 1.08107 1.46981 1.30291 0.85469 0.78977
0.77579 0.79428 1.18564 1.20745 1.20759 1.21962 0.99278 0.98664
0.80186 1.67258 1.09071 1.31749 1.12417 1.21633 0.89008 0.96924
0.95785 1.20863 0.99766 0.91689 1.03964 0.89375 0.89773 0.90116
0.81793 0.82791 0.87598 0.89432 0.75070 0.91121 0.82770 0.88284
0.93404 0.92695 0.92470 0.92967 0.93827 0.89752 0.89234 0.91603
0.88193
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.79 9.62 71.24 0.69 -0.10 16
2 C -0.13 -1.83 5.90 -19.77 -0.12 -1.94 16
3 C -0.08 -1.08 9.86 22.47 0.22 -0.86 16
4 C -0.16 -2.57 9.72 22.36 0.22 -2.35 16
5 C 0.08 1.75 6.15 42.55 0.26 2.01 16
6 C 0.18 3.83 5.98 85.63 0.51 4.34 16
7 N -0.68 -18.95 5.54 -468.12 -2.59 -21.54 16
8 C 0.53 17.78 7.78 87.27 0.68 18.46 16
9 O -0.51 -17.19 13.10 -3.25 -0.04 -17.23 16
10 C 0.49 20.78 7.74 87.27 0.68 21.45 16
11 O -0.56 -27.51 15.95 -3.27 -0.05 -27.56 16
12 N -0.57 -24.95 2.97 -820.48 -2.44 -27.39 16
13 C 0.05 1.71 6.27 86.36 0.54 2.25 16
14 C -0.12 -4.13 6.08 30.67 0.19 -3.94 16
15 C -0.11 -4.39 5.11 30.62 0.16 -4.23 16
16 C 0.04 2.00 2.25 -11.46 -0.03 1.98 16
17 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16
18 C -0.53 -29.71 8.57 25.60 0.22 -29.49 16
19 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16
20 C 0.01 0.55 5.30 84.65 0.45 1.00 16
21 N -0.92 -55.30 11.38 21.45 0.24 -55.05 16
22 Si 0.96 44.37 29.54 68.60 2.03 46.39 16
23 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16
24 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16
25 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16
26 C 0.12 6.20 5.38 86.36 0.46 6.66 16
27 N -0.49 -11.41 10.19 -172.08 -1.75 -13.16 16
28 C 0.10 1.91 6.78 42.54 0.29 2.20 16
29 C -0.11 -1.34 9.77 71.23 0.70 -0.64 16
30 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16
31 H 0.08 0.45 5.96 -2.39 -0.01 0.44 16
32 H 0.08 0.42 8.10 -2.39 -0.02 0.40 16
33 H 0.16 1.24 8.06 -2.91 -0.02 1.22 16
34 H 0.15 1.96 8.06 -2.91 -0.02 1.93 16
35 H 0.11 1.97 8.04 -2.38 -0.02 1.95 16
36 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16
37 H 0.41 11.87 7.95 -92.71 -0.74 11.14 16
38 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16
39 H 0.16 5.18 3.78 -78.73 -0.30 4.88 16
40 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16
41 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16
42 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16
43 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16
44 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16
45 H 0.04 2.22 8.14 -2.39 -0.02 2.20 16
46 H 0.08 5.04 5.17 -2.39 -0.01 5.03 16
47 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16
48 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16
49 H 0.10 0.78 5.94 -2.39 -0.01 0.77 16
Total: -1.00 -72.97 394.92 1.45 -71.52
By element:
Atomic # 1 Polarization: 27.28 SS G_CDS: -0.05 Total: 27.23 kcal
Atomic # 6 Polarization: 10.68 SS G_CDS: 6.11 Total: 16.79 kcal
Atomic # 7 Polarization: -110.61 SS G_CDS: -6.54 Total: -117.15 kcal
Atomic # 8 Polarization: -44.70 SS G_CDS: -0.09 Total: -44.79 kcal
Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal
Total: -72.97 1.45 -71.52 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001328510829.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 22.244 kcal
(2) G-P(sol) polarization free energy of solvation -72.973 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.729 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.455 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.518 kcal
(6) G-S(sol) free energy of system = (1) + (5) -49.274 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds