Wall clock time and date at job start Wed Apr 1 2020 04:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38677 * 120.41926 * 2 1 4 4 C 1.38626 * 118.42342 * 179.71501 * 3 2 1 5 5 C 1.38233 * 119.15640 * 0.50216 * 4 3 2 6 6 C 1.50699 * 119.61550 * 179.75578 * 5 4 3 7 7 C 1.52998 * 109.47049 * 124.73210 * 6 5 4 8 8 N 1.46502 * 109.47360 * 180.02562 * 7 6 5 9 9 C 1.34782 * 120.00166 * 180.02562 * 8 7 6 10 10 O 1.21350 * 119.99528 * 359.97438 * 9 8 7 11 11 C 1.49446 * 120.00084 * 179.97438 * 9 8 7 12 12 O 1.21356 * 119.99803 * 353.37756 * 11 9 8 13 13 N 1.34768 * 120.00057 * 173.37736 * 11 9 8 14 14 C 1.46923 * 120.63140 * 353.06161 * 13 11 9 15 15 C 1.53197 * 108.77603 * 126.41596 * 14 13 11 16 16 C 1.53036 * 109.34037 * 54.62030 * 15 14 13 17 17 C 1.53043 * 109.53781 * 298.68543 * 16 15 14 18 18 H 1.09000 * 109.49772 * 301.34791 * 17 16 15 19 19 C 1.50699 * 109.49861 * 181.28187 * 17 16 15 20 20 H 1.08009 * 119.99826 * 0.06421 * 19 17 16 21 21 C 1.37874 * 120.00391 * 180.34183 * 19 17 16 22 22 N 1.31511 * 119.99935 * 359.72505 * 21 19 17 23 23 Si 1.86803 * 120.00371 * 179.72468 * 21 19 17 24 24 H 1.48502 * 109.47059 * 89.99815 * 23 21 19 25 25 H 1.48498 * 109.47106 * 209.99770 * 23 21 19 26 26 H 1.48506 * 109.46912 * 330.00086 * 23 21 19 27 27 C 1.46927 * 120.63303 * 173.08900 * 13 11 9 28 28 N 1.31855 * 120.76494 * 359.49128 * 5 4 3 29 29 C 1.31882 * 121.72385 * 0.26392 * 28 5 4 30 30 H 1.08991 * 109.46886 * 270.01952 * 1 2 3 31 31 H 1.09000 * 109.47404 * 30.02470 * 1 2 3 32 32 H 1.08999 * 109.46765 * 150.01912 * 1 2 3 33 33 H 1.08001 * 120.78529 * 0.02562 * 3 2 1 34 34 H 1.07995 * 120.42471 * 180.28740 * 4 3 2 35 35 H 1.09004 * 109.47291 * 4.73487 * 6 5 4 36 36 H 1.08999 * 109.47577 * 244.73415 * 6 5 4 37 37 H 1.09007 * 109.47352 * 60.00056 * 7 6 5 38 38 H 1.09010 * 109.47442 * 300.00142 * 7 6 5 39 39 H 0.96996 * 120.00059 * 359.97438 * 8 7 6 40 40 H 1.08998 * 109.59171 * 246.19792 * 14 13 11 41 41 H 1.09003 * 109.58922 * 6.48999 * 14 13 11 42 42 H 1.08995 * 109.50150 * 174.58993 * 15 14 13 43 43 H 1.09009 * 109.49617 * 294.68452 * 15 14 13 44 44 H 1.08997 * 109.49188 * 178.64856 * 16 15 14 45 45 H 1.09001 * 109.43006 * 58.68768 * 16 15 14 46 46 H 0.97000 * 120.00590 * 180.02562 * 22 21 19 47 47 H 1.09003 * 109.59192 * 113.79627 * 27 13 11 48 48 H 1.08998 * 109.70190 * 353.44355 * 27 13 11 49 49 H 1.08000 * 119.61649 * 180.02562 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5946 1.1476 0.0061 5 6 4.2256 -0.0823 0.0013 6 6 5.7312 -0.1468 0.0022 7 6 6.2046 -0.9948 1.1844 8 7 7.6683 -1.0570 1.1858 9 6 8.3123 -1.7548 2.1423 10 8 7.6796 -2.3310 3.0027 11 6 9.8054 -1.8187 2.1433 12 8 10.4336 -1.3457 1.2191 13 7 10.4542 -2.4018 3.1707 14 6 9.7213 -2.8428 4.3652 15 6 10.0447 -4.3174 4.6256 16 6 11.5619 -4.4950 4.7180 17 6 12.2068 -4.0852 3.3919 18 1 11.7992 -4.6947 2.5854 19 6 13.6976 -4.2900 3.4731 20 1 14.1412 -4.6752 4.3795 21 6 14.4959 -3.9805 2.3925 22 7 13.9558 -3.5115 1.2889 23 14 16.3447 -4.2272 2.4958 24 1 16.6873 -5.5985 2.0403 25 1 17.0260 -3.2329 1.6284 26 1 16.7904 -4.0465 3.9008 27 6 11.9080 -2.6079 3.1176 28 7 3.5255 -1.1996 0.0012 29 6 2.2067 -1.1916 0.0004 30 1 -0.3633 0.0004 1.0276 31 1 -0.3634 0.8897 -0.5142 32 1 -0.3633 -0.8902 -0.5135 33 1 1.6889 2.1423 0.0004 34 1 4.1735 2.0592 0.0109 35 1 6.1380 0.8605 0.0917 36 1 6.0763 -0.5966 -0.9288 37 1 5.7978 -2.0022 1.0950 38 1 5.8596 -0.5450 2.1155 39 1 8.1739 -0.5968 0.4978 40 1 10.0275 -2.2446 5.2234 41 1 8.6502 -2.7250 4.2011 42 1 9.5841 -4.6310 5.5624 43 1 9.6569 -4.9249 3.8078 44 1 11.7938 -5.5392 4.9271 45 1 11.9521 -3.8688 5.5203 46 1 14.5174 -3.2941 0.5284 47 1 12.3925 -1.9905 3.8741 48 1 12.2818 -2.3367 2.1304 49 1 1.6672 -2.1272 0.0007 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329082831.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:32 Heat of formation + Delta-G solvation = -32.379458 kcal Electronic energy + Delta-G solvation = -29409.206769 eV Core-core repulsion = 25336.267389 eV Total energy + Delta-G solvation = -4072.939380 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.76548 -40.39107 -38.29630 -36.83784 -35.92924 -34.14656 -33.21022 -32.63258 -31.69558 -30.71074 -29.70640 -27.28645 -25.76218 -24.97092 -24.39479 -23.42293 -22.08349 -21.75204 -21.54930 -20.14491 -18.75576 -17.31695 -17.18359 -16.69065 -16.28131 -16.11214 -15.77832 -15.52643 -15.23652 -15.00443 -14.59375 -14.46714 -14.41961 -13.77044 -13.63405 -13.53899 -13.34398 -13.17939 -13.06474 -12.92966 -12.74977 -12.56238 -12.12504 -12.06811 -11.96364 -11.78169 -11.63404 -11.34317 -10.96652 -10.68131 -10.42456 -10.25341 -10.16785 -10.02424 -9.86072 -9.77208 -9.23144 -9.17848 -9.13610 -9.09075 -8.48822 -8.38571 -7.79313 -6.00183 -4.08297 0.67994 0.89911 1.84076 2.71859 3.31587 3.37072 3.38674 3.41321 3.69034 3.85170 4.03423 4.31788 4.39071 4.43388 4.48434 4.58468 4.68975 4.82361 4.85235 4.98781 5.10017 5.11640 5.29871 5.30355 5.36639 5.50960 5.62946 5.66416 5.73226 5.75443 5.81685 5.86709 5.92690 6.11454 6.29242 6.32574 6.42787 6.63722 6.66067 6.79014 6.90250 7.02597 7.08374 7.21188 7.28369 7.61805 7.63485 7.85872 7.97845 8.04326 8.20288 8.37799 8.61246 8.95792 9.57130 11.05449 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.025005 B = 0.001859 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.494589 B =15056.737963 C =15725.953850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.144 4.144 3 C -0.076 4.076 4 C -0.162 4.162 5 C 0.128 3.872 6 C -0.082 4.082 7 C 0.127 3.873 8 N -0.705 5.705 9 C 0.512 3.488 10 O -0.513 6.513 11 C 0.495 3.505 12 O -0.525 6.525 13 N -0.567 5.567 14 C 0.050 3.950 15 C -0.128 4.128 16 C -0.113 4.113 17 C 0.040 3.960 18 H 0.029 0.971 19 C -0.519 4.519 20 H 0.059 0.941 21 C 0.062 3.938 22 N -0.883 5.883 23 Si 0.894 3.106 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.274 1.274 27 C 0.108 3.892 28 N -0.474 5.474 29 C 0.104 3.896 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.413 0.587 40 H 0.054 0.946 41 H 0.144 0.856 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.050 0.950 45 H 0.048 0.952 46 H 0.264 0.736 47 H 0.047 0.953 48 H 0.123 0.877 49 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.826 10.451 -2.348 27.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.146 4.146 3 C -0.101 4.101 4 C -0.182 4.182 5 C -0.010 4.010 6 C -0.120 4.120 7 C 0.003 3.997 8 N -0.359 5.359 9 C 0.295 3.705 10 O -0.391 6.391 11 C 0.276 3.724 12 O -0.403 6.403 13 N -0.299 5.299 14 C -0.072 4.072 15 C -0.166 4.166 16 C -0.151 4.151 17 C 0.021 3.979 18 H 0.048 0.952 19 C -0.557 4.557 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.521 5.521 23 Si 0.722 3.278 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.199 1.199 27 C -0.011 4.011 28 N -0.182 5.182 29 C -0.053 4.053 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.152 0.848 34 H 0.154 0.846 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.249 0.751 40 H 0.072 0.928 41 H 0.160 0.840 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.067 0.933 46 H 0.074 0.926 47 H 0.066 0.934 48 H 0.141 0.859 49 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -25.419 9.558 -2.398 27.263 hybrid contribution 0.839 0.879 -0.260 1.243 sum -24.580 10.438 -2.659 26.836 Atomic orbital electron populations 1.20721 0.90159 1.03156 1.02691 1.20968 0.97689 0.94312 1.01646 1.21491 0.93980 0.98240 0.96438 1.21995 0.95212 0.98940 1.02023 1.20964 0.95800 0.88631 0.95599 1.20727 0.89431 1.01835 1.00057 1.21312 0.78969 1.01570 0.97848 1.45814 1.07414 1.52139 1.30508 1.20762 0.89679 0.78670 0.81405 1.90306 1.68387 1.44485 1.35899 1.19750 0.87129 0.81328 0.84181 1.90753 1.67799 1.46309 1.35434 1.48434 1.10672 1.54922 1.15832 1.23082 1.02132 0.95282 0.86696 1.21854 0.98152 0.95887 1.00675 1.21662 0.92932 1.00338 1.00125 1.18980 0.95387 0.91370 0.92195 0.95244 1.21101 0.91156 1.43786 0.99667 0.92250 1.25061 0.98816 0.94873 0.95332 1.69870 1.35360 1.43336 1.03491 0.86566 0.85391 0.77905 0.77982 1.20671 1.21184 1.19895 1.22476 0.73744 0.99531 1.05390 1.67480 1.08265 1.30927 1.11565 1.22686 0.89605 0.97608 0.95437 0.90819 0.91361 0.91086 0.84819 0.84569 0.89291 0.88797 0.89763 0.91226 0.75080 0.92776 0.83996 0.92296 0.92321 0.93088 0.93276 0.92639 0.93415 0.85874 0.82693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.44 10.04 36.01 0.36 -0.07 16 2 C -0.14 -0.96 5.90 -104.48 -0.62 -1.58 16 3 C -0.08 -0.49 9.86 -39.28 -0.39 -0.87 16 4 C -0.16 -1.16 9.71 -39.44 -0.38 -1.54 16 5 C 0.13 1.16 6.18 -82.58 -0.51 0.65 16 6 C -0.08 -0.67 5.73 -27.88 -0.16 -0.83 16 7 C 0.13 1.39 5.53 -4.04 -0.02 1.37 16 8 N -0.71 -9.26 5.55 -60.72 -0.34 -9.60 16 9 C 0.51 8.71 7.78 -11.58 -0.09 8.62 16 10 O -0.51 -9.18 13.10 5.50 0.07 -9.11 16 11 C 0.50 10.20 7.74 -11.59 -0.09 10.11 16 12 O -0.53 -12.06 15.95 5.49 0.09 -11.97 16 13 N -0.57 -12.13 2.97 -173.27 -0.51 -12.65 16 14 C 0.05 0.92 6.27 -3.71 -0.02 0.89 16 15 C -0.13 -2.35 6.08 -26.61 -0.16 -2.51 16 16 C -0.11 -2.38 5.11 -26.69 -0.14 -2.52 16 17 C 0.04 1.01 2.25 -91.65 -0.21 0.80 16 18 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 19 C -0.52 -14.21 8.57 -34.44 -0.30 -14.51 16 20 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 21 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 22 N -0.88 -25.67 11.38 55.43 0.63 -25.03 16 23 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 26 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 27 C 0.11 2.68 5.38 -3.71 -0.02 2.66 16 28 N -0.47 -4.93 9.88 -9.47 -0.09 -5.02 16 29 C 0.10 0.86 10.86 -17.55 -0.19 0.67 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.21 8.10 -51.93 -0.42 -0.21 16 32 H 0.07 0.23 8.09 -51.93 -0.42 -0.19 16 33 H 0.13 0.54 8.06 -52.49 -0.42 0.11 16 34 H 0.14 0.68 7.95 -52.49 -0.42 0.26 16 35 H 0.09 0.55 7.87 -51.93 -0.41 0.14 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.08 1.07 7.95 -51.93 -0.41 0.65 16 38 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 39 H 0.41 4.92 7.96 -40.82 -0.33 4.59 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.14 2.56 3.78 -56.75 -0.21 2.34 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.06 1.13 8.14 -51.92 -0.42 0.71 16 44 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 46 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 47 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 48 H 0.12 3.47 5.17 -51.93 -0.27 3.20 16 49 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 398.43 15.07 6.00 6.00 Total: -1.00 -32.87 398.43 -9.70 -42.57 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -7.50 Total: 5.54 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -3.03 Total: 2.96 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: -0.31 Total: -52.30 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: 0.16 Total: -21.08 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.87 -9.70 -42.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329082831.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.191 kcal (2) G-P(sol) polarization free energy of solvation -32.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds