Wall clock time and date at job start Wed Apr 1 2020 04:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35738 * 120.33053 * 2 1 4 4 C 1.40823 * 119.71868 * 180.02562 * 3 2 1 5 5 C 1.34544 * 120.58557 * 0.02562 * 4 3 2 6 6 N 1.37434 * 120.73701 * 359.95543 * 5 4 3 7 7 C 1.35133 * 131.28145 * 180.02562 * 6 5 4 8 8 C 1.38058 * 108.77014 * 180.02562 * 7 6 5 9 9 C 1.47502 * 126.36851 * 180.02562 * 8 7 6 10 10 O 1.21593 * 120.00026 * 18.62427 * 9 8 7 11 11 N 1.34783 * 119.99408 * 198.62770 * 9 8 7 12 12 C 1.46500 * 120.00133 * 358.34362 * 11 9 8 13 13 C 1.46498 * 119.99676 * 178.34300 * 11 9 8 14 14 C 1.53002 * 109.46923 * 89.99909 * 13 11 9 15 15 H 1.08994 * 109.47314 * 305.00423 * 14 13 11 16 16 O 1.42905 * 109.47022 * 65.00169 * 14 13 11 17 17 C 1.52999 * 109.47152 * 184.99882 * 14 13 11 18 18 N 1.46503 * 109.47317 * 180.02562 * 17 14 13 19 19 C 1.46492 * 119.99916 * 270.00399 * 18 17 14 20 20 C 1.36938 * 119.99863 * 89.99949 * 18 17 14 21 21 H 1.08008 * 120.00119 * 341.79675 * 20 18 17 22 22 C 1.38808 * 119.99807 * 161.52720 * 20 18 17 23 23 N 1.31618 * 120.00103 * 344.29303 * 22 20 18 24 24 Si 1.86803 * 119.99982 * 164.30038 * 22 20 18 25 25 H 1.48500 * 109.47203 * 59.99659 * 24 22 20 26 26 H 1.48503 * 109.47138 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47127 * 299.99267 * 24 22 20 28 28 C 1.41200 * 107.25475 * 0.25948 * 8 7 6 29 29 C 1.37949 * 119.81465 * 0.04462 * 6 5 4 30 30 H 1.09001 * 109.47478 * 269.97602 * 1 2 3 31 31 H 1.09002 * 109.47476 * 29.97325 * 1 2 3 32 32 H 1.09005 * 109.47215 * 149.97657 * 1 2 3 33 33 H 1.07995 * 120.14281 * 0.02562 * 3 2 1 34 34 H 1.07999 * 119.71002 * 180.02562 * 4 3 2 35 35 H 1.08002 * 119.62845 * 179.97438 * 5 4 3 36 36 H 1.07999 * 125.61078 * 0.02562 * 7 6 5 37 37 H 1.08991 * 109.47346 * 275.91601 * 12 11 9 38 38 H 1.09005 * 109.46867 * 35.91199 * 12 11 9 39 39 H 1.09001 * 109.46741 * 155.91083 * 12 11 9 40 40 H 1.09003 * 109.47468 * 330.00426 * 13 11 9 41 41 H 1.08996 * 109.47045 * 210.00051 * 13 11 9 42 42 H 0.96700 * 114.00030 * 59.99672 * 16 14 13 43 43 H 1.09001 * 109.47268 * 60.00069 * 17 14 13 44 44 H 1.08999 * 109.47179 * 300.00039 * 17 14 13 45 45 H 1.09003 * 109.47109 * 265.02192 * 19 18 17 46 46 H 1.09003 * 109.47501 * 25.02266 * 19 18 17 47 47 H 1.08996 * 109.47315 * 145.02502 * 19 18 17 48 48 H 0.96998 * 120.00325 * 180.02562 * 23 22 20 49 49 H 1.07998 * 126.56457 * 179.72000 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1925 1.1716 0.0000 4 6 3.6006 1.1565 -0.0005 5 6 4.2728 -0.0089 -0.0016 6 7 3.6004 -1.2076 -0.0012 7 6 4.0499 -2.4820 -0.0016 8 6 2.9650 -3.3357 -0.0015 9 6 3.0121 -4.8100 -0.0013 10 8 4.0289 -5.3857 0.3351 11 7 1.9281 -5.5188 -0.3741 12 6 0.6916 -4.8259 -0.7447 13 6 1.9862 -6.9822 -0.4088 14 6 1.5670 -7.5417 0.9522 15 1 2.1866 -7.1004 1.7329 16 8 0.1953 -7.2235 1.1959 17 6 1.7466 -9.0611 0.9563 18 7 1.3447 -9.5968 2.2593 19 6 2.3309 -9.7231 3.3352 20 6 0.0471 -9.9794 2.4715 21 1 -0.7340 -9.6285 1.8132 22 6 -0.2637 -10.8229 3.5292 23 7 0.6901 -11.4985 4.1343 24 14 -2.0356 -10.9991 4.0939 25 1 -2.8640 -11.5100 2.9723 26 1 -2.1003 -11.9523 5.2307 27 1 -2.5510 -9.6756 4.5272 28 6 1.8020 -2.5350 -0.0072 29 6 2.2210 -1.2202 -0.0007 30 1 -0.3634 -0.0004 1.0276 31 1 -0.3634 0.8902 -0.5134 32 1 -0.3634 -0.8898 -0.5142 33 1 1.6602 2.1113 0.0004 34 1 4.1458 2.0888 -0.0001 35 1 5.3528 -0.0024 -0.0024 36 1 5.0871 -2.7829 -0.0019 37 1 0.1203 -4.5962 0.1547 38 1 0.9361 -3.9004 -1.2660 39 1 0.0987 -5.4655 -1.3984 40 1 3.0042 -7.3002 -0.6343 41 1 1.3103 -7.3546 -1.1785 42 1 -0.4150 -7.5848 0.5386 43 1 2.7929 -9.3038 0.7704 44 1 1.1270 -9.5023 0.1757 45 1 2.7394 -10.7337 3.3368 46 1 3.1361 -9.0059 3.1760 47 1 1.8509 -9.5238 4.2932 48 1 0.4730 -12.0882 4.8732 49 1 0.7802 -2.8847 -0.0129 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486356454.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:54 Heat of formation + Delta-G solvation = 10.579416 kcal Electronic energy + Delta-G solvation = -30201.839541 eV Core-core repulsion = 26130.762997 eV Total energy + Delta-G solvation = -4071.076544 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.27184 -40.83252 -38.85981 -37.54880 -36.85771 -36.02597 -35.00470 -33.30333 -31.93783 -30.72352 -29.52659 -28.32587 -27.90988 -27.57530 -27.06129 -24.62691 -23.42661 -22.84210 -22.18334 -22.09946 -20.23824 -18.80487 -18.48865 -17.77416 -17.59712 -17.18857 -16.98771 -16.73628 -16.35251 -16.29196 -16.01643 -15.78274 -15.27951 -15.19190 -14.99328 -14.77489 -14.54543 -14.16354 -14.09788 -14.04381 -13.80571 -13.64471 -13.24221 -13.08172 -12.76887 -12.75151 -12.58801 -12.52050 -12.47537 -12.26340 -12.20412 -12.01671 -11.98252 -11.89200 -11.81963 -11.24705 -11.07435 -10.96499 -10.54590 -9.71924 -9.46267 -8.71076 -8.29489 -7.75986 -5.18798 -0.19212 0.36722 1.08488 1.47398 1.52746 1.58180 1.63090 2.14208 2.38788 2.53986 2.56479 3.36563 3.54974 3.57643 3.62530 3.78903 3.84669 3.97412 4.07241 4.09916 4.16405 4.20859 4.34481 4.38590 4.50219 4.56086 4.57669 4.71507 4.75267 4.78192 4.79117 4.82612 4.85318 4.89353 4.93739 5.00121 5.15874 5.22663 5.25111 5.35314 5.37574 5.47783 5.54843 5.61628 5.70990 5.72734 5.90720 6.27333 6.35304 6.41453 7.05592 7.18138 7.20158 7.90875 8.35872 9.29055 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017864 B = 0.002280 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.989771 B =12279.203580 C =12975.379929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.061 4.061 3 C -0.137 4.137 4 C -0.122 4.122 5 C 0.011 3.989 6 N -0.341 5.341 7 C 0.000 4.000 8 C -0.190 4.190 9 C 0.575 3.425 10 O -0.592 6.592 11 N -0.596 5.596 12 C 0.069 3.931 13 C 0.094 3.906 14 C 0.091 3.909 15 H 0.048 0.952 16 O -0.557 6.557 17 C 0.122 3.878 18 N -0.613 5.613 19 C 0.179 3.821 20 C -0.233 4.233 21 H 0.083 0.917 22 C -0.072 4.072 23 N -0.949 5.949 24 Si 0.971 3.029 25 H -0.269 1.269 26 H -0.301 1.301 27 H -0.285 1.285 28 C -0.182 4.182 29 C 0.020 3.980 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.161 0.839 34 H 0.180 0.820 35 H 0.185 0.815 36 H 0.184 0.816 37 H 0.060 0.940 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.116 0.884 42 H 0.377 0.623 43 H 0.050 0.950 44 H 0.069 0.931 45 H 0.006 0.994 46 H 0.015 0.985 47 H 0.014 0.986 48 H 0.244 0.756 49 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.460 30.262 -15.877 34.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.062 4.062 3 C -0.157 4.157 4 C -0.142 4.142 5 C -0.106 4.106 6 N -0.004 5.004 7 C -0.135 4.135 8 C -0.197 4.197 9 C 0.365 3.635 10 O -0.474 6.474 11 N -0.326 5.326 12 C -0.072 4.072 13 C -0.029 4.029 14 C 0.028 3.972 15 H 0.066 0.934 16 O -0.362 6.362 17 C -0.005 4.005 18 N -0.335 5.335 19 C 0.034 3.966 20 C -0.364 4.364 21 H 0.101 0.899 22 C -0.265 4.265 23 N -0.598 5.598 24 Si 0.800 3.200 25 H -0.195 1.195 26 H -0.228 1.228 27 H -0.212 1.212 28 C -0.205 4.205 29 C -0.085 4.085 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.092 0.908 33 H 0.179 0.821 34 H 0.198 0.802 35 H 0.202 0.798 36 H 0.201 0.799 37 H 0.078 0.922 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.097 0.903 41 H 0.134 0.866 42 H 0.224 0.776 43 H 0.068 0.932 44 H 0.087 0.913 45 H 0.024 0.976 46 H 0.034 0.966 47 H 0.033 0.967 48 H 0.053 0.947 49 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 2.409 30.306 -15.092 33.942 hybrid contribution -0.467 -1.075 0.564 1.301 sum 1.942 29.232 -14.528 32.701 Atomic orbital electron populations 1.20797 0.88004 1.04442 1.03444 1.19733 0.97799 0.89684 0.99002 1.21295 0.94216 0.98557 1.01676 1.21216 0.94954 0.97861 1.00141 1.22297 0.99973 0.82545 1.05802 1.41479 1.07517 1.05683 1.45687 1.22035 0.99796 0.80571 1.11076 1.19455 0.94842 0.91742 1.13664 1.17909 0.82671 0.86688 0.76220 1.90736 1.33364 1.72676 1.50639 1.47589 1.12792 1.06506 1.65685 1.22523 0.84779 0.98976 1.00962 1.22224 1.03763 0.79142 0.97815 1.22715 0.83059 0.95783 0.95609 0.93352 1.86596 1.16305 1.77823 1.55521 1.21536 0.98906 0.92382 0.87656 1.44025 1.07399 1.73176 1.08904 1.20486 0.89730 0.95797 0.90619 1.19532 0.84745 1.20344 1.11734 0.89937 1.25755 1.01163 0.98117 1.01457 1.70279 1.32794 1.30608 1.26136 0.85270 0.80474 0.76736 0.77555 1.19450 1.22777 1.21190 1.21955 0.99186 0.89548 1.09796 1.19120 0.82217 0.95783 1.11414 0.90269 0.88901 0.90783 0.82130 0.80235 0.79769 0.79868 0.92174 0.88858 0.88830 0.90301 0.86606 0.77582 0.93214 0.91305 0.97564 0.96634 0.96667 0.94723 0.80492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 9.91 71.24 0.71 -0.35 16 2 C -0.06 -0.90 5.90 -19.67 -0.12 -1.02 16 3 C -0.14 -1.44 9.72 22.32 0.22 -1.23 16 4 C -0.12 -1.13 9.97 22.06 0.22 -0.91 16 5 C 0.01 0.14 10.89 82.97 0.90 1.05 16 6 N -0.34 -6.95 2.92 -345.07 -1.01 -7.96 16 7 C 0.00 -0.01 11.42 84.14 0.96 0.95 16 8 C -0.19 -5.24 5.82 -20.15 -0.12 -5.36 16 9 C 0.57 18.93 7.66 86.68 0.66 19.59 16 10 O -0.59 -24.09 16.54 -4.01 -0.07 -24.16 16 11 N -0.60 -16.38 2.84 -850.58 -2.41 -18.80 16 12 C 0.07 1.31 8.41 127.77 1.07 2.38 16 13 C 0.09 2.64 5.09 86.38 0.44 3.08 16 14 C 0.09 3.33 3.48 30.59 0.11 3.44 16 15 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 16 O -0.56 -20.12 12.00 -148.98 -1.79 -21.91 16 17 C 0.12 4.98 5.36 86.38 0.46 5.44 16 18 N -0.61 -32.21 2.88 -726.95 -2.09 -34.30 16 19 C 0.18 9.83 8.98 127.77 1.15 10.98 16 20 C -0.23 -12.98 9.08 84.03 0.76 -12.21 16 21 H 0.08 4.26 7.68 -2.91 -0.02 4.24 16 22 C -0.07 -4.19 5.06 84.86 0.43 -3.76 16 23 N -0.95 -59.14 10.60 21.65 0.23 -58.91 16 24 Si 0.97 46.85 29.58 68.60 2.03 48.88 16 25 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 26 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 27 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 28 C -0.18 -4.09 8.16 22.94 0.19 -3.90 16 29 C 0.02 0.41 6.60 38.90 0.26 0.67 16 30 H 0.08 0.74 8.14 -2.39 -0.02 0.73 16 31 H 0.09 0.49 8.09 -2.39 -0.02 0.47 16 32 H 0.07 0.69 7.69 -2.38 -0.02 0.68 16 33 H 0.16 0.75 8.06 -2.91 -0.02 0.72 16 34 H 0.18 0.35 8.06 -2.91 -0.02 0.32 16 35 H 0.19 1.32 8.06 -2.91 -0.02 1.30 16 36 H 0.18 4.06 8.06 -2.91 -0.02 4.03 16 37 H 0.06 1.21 7.41 -2.39 -0.02 1.20 16 38 H 0.09 1.53 5.19 -2.38 -0.01 1.52 16 39 H 0.09 1.30 7.83 -2.39 -0.02 1.28 16 40 H 0.08 2.41 7.44 -2.39 -0.02 2.39 16 41 H 0.12 2.36 7.85 -2.39 -0.02 2.34 16 42 H 0.38 10.55 9.05 -74.06 -0.67 9.88 16 43 H 0.05 1.97 8.07 -2.39 -0.02 1.95 16 44 H 0.07 2.53 8.04 -2.39 -0.02 2.51 16 45 H 0.01 0.36 7.46 -2.39 -0.02 0.34 16 46 H 0.02 0.76 8.03 -2.39 -0.02 0.74 16 47 H 0.01 0.88 7.09 -2.39 -0.02 0.86 16 48 H 0.24 14.84 8.31 -92.71 -0.77 14.07 16 49 H 0.18 3.25 4.84 -2.91 -0.01 3.24 16 Total: -1.00 -83.25 398.76 3.49 -79.76 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 0.30 Total: 18.56 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: 8.30 Total: 18.84 kcal Atomic # 7 Polarization: -114.68 SS G_CDS: -5.28 Total: -119.97 kcal Atomic # 8 Polarization: -44.21 SS G_CDS: -1.85 Total: -46.07 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -83.25 3.49 -79.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486356454.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.336 kcal (2) G-P(sol) polarization free energy of solvation -83.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds