Wall clock time and date at job start Wed Apr 1 2020 06:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50694 * 110.29190 * 2 1 4 4 N 1.34784 * 119.99988 * 300.69965 * 3 2 1 5 5 O 1.21283 * 120.00363 * 120.69847 * 3 2 1 6 6 C 1.54621 * 110.32586 * 122.13527 * 2 1 3 7 7 C 1.55116 * 102.76076 * 97.20521 * 6 2 1 8 8 N 1.48117 * 103.31386 * 37.26506 * 7 6 2 9 9 C 1.34773 * 127.03224 * 140.79594 * 8 7 6 10 10 O 1.21587 * 120.00147 * 179.97438 * 9 8 7 11 11 N 1.34778 * 120.00197 * 359.96294 * 9 8 7 12 12 C 1.46493 * 119.99998 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.47068 * 324.99512 * 12 11 9 14 14 C 1.53004 * 109.47013 * 204.99843 * 12 11 9 15 15 C 1.50696 * 109.47083 * 64.99946 * 14 12 11 16 16 H 1.07998 * 120.00418 * 359.97438 * 15 14 12 17 17 C 1.37883 * 119.99880 * 180.02562 * 15 14 12 18 18 N 1.31512 * 119.99989 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99961 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46715 * 89.99781 * 19 17 15 21 21 H 1.48494 * 109.47210 * 209.99765 * 19 17 15 22 22 H 1.48496 * 109.47003 * 330.00080 * 19 17 15 23 23 C 1.50696 * 109.47600 * 84.99575 * 12 11 9 24 24 C 1.38241 * 119.99711 * 39.72713 * 23 12 11 25 25 C 1.38237 * 120.00142 * 179.79004 * 24 23 12 26 26 C 1.38230 * 119.99694 * 0.46158 * 25 24 23 27 27 C 1.38234 * 120.00039 * 359.76782 * 26 25 24 28 28 C 1.38232 * 120.00440 * 0.02591 * 27 26 25 29 29 C 1.47487 * 105.93046 * 320.76468 * 8 7 6 30 30 H 1.09008 * 109.47203 * 59.30399 * 1 2 3 31 31 H 1.09003 * 109.47566 * 179.30051 * 1 2 3 32 32 H 1.08994 * 109.47565 * 299.30329 * 1 2 3 33 33 H 0.97000 * 119.99339 * 0.02562 * 4 3 2 34 34 H 0.96995 * 120.00015 * 179.72576 * 4 3 2 35 35 H 1.08997 * 110.73613 * 215.48303 * 6 2 1 36 36 H 1.08996 * 110.73681 * 338.80371 * 6 2 1 37 37 H 1.09000 * 110.58199 * 278.82582 * 7 6 2 38 38 H 1.09000 * 110.81749 * 155.81902 * 7 6 2 39 39 H 0.96998 * 119.99776 * 359.97438 * 11 9 8 40 40 H 1.08999 * 109.47216 * 184.99978 * 14 12 11 41 41 H 1.08998 * 109.47264 * 304.99724 * 14 12 11 42 42 H 0.97002 * 119.99766 * 180.02562 * 18 17 15 43 43 H 1.08002 * 119.99807 * 359.97438 * 24 23 12 44 44 H 1.07998 * 120.00009 * 180.25087 * 25 24 23 45 45 H 1.08000 * 119.99759 * 179.79136 * 26 25 24 46 46 H 1.08004 * 119.99832 * 179.97438 * 27 26 25 47 47 H 1.07998 * 120.00215 * 179.97438 * 28 27 26 48 48 H 1.08999 * 109.91365 * 266.08457 * 29 8 7 49 49 H 1.09001 * 109.91204 * 144.80842 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0525 1.4134 0.0000 4 7 1.7273 2.2522 -1.0037 5 8 2.7658 1.7963 0.9031 6 6 2.0670 -0.7712 1.2278 7 6 2.3640 -2.1780 0.6457 8 7 2.8824 -1.8837 -0.7102 9 6 3.8938 -2.5079 -1.3457 10 8 4.2152 -2.1597 -2.4654 11 7 4.5490 -3.5179 -0.7400 12 6 5.6480 -4.1968 -1.4310 13 1 5.4301 -4.2475 -2.4979 14 6 5.8028 -5.6135 -0.8742 15 6 4.5705 -6.4181 -1.1983 16 1 3.7579 -5.9643 -1.7462 17 6 4.4800 -7.7333 -0.7944 18 7 5.4692 -8.2857 -0.1268 19 14 2.9521 -8.7305 -1.1956 20 1 3.1313 -9.4047 -2.5065 21 1 2.7359 -9.7514 -0.1392 22 1 1.7748 -7.8278 -1.2600 23 6 6.9271 -3.4297 -1.2155 24 6 7.1985 -2.8717 0.0198 25 6 8.3739 -2.1717 0.2188 26 6 9.2733 -2.0217 -0.8201 27 6 8.9996 -2.5757 -2.0567 28 6 7.8263 -3.2793 -2.2545 29 6 2.0649 -0.7682 -1.2228 30 1 -0.3634 0.5246 -0.8837 31 1 -0.3634 -1.0276 -0.0125 32 1 -0.3634 0.5029 0.8961 33 1 1.1565 1.9460 -1.7258 34 1 2.0604 3.1631 -1.0016 35 1 2.9794 -0.3093 1.6048 36 1 1.3099 -0.8273 2.0098 37 1 1.4503 -2.7696 0.5881 38 1 3.1171 -2.6930 1.2421 39 1 4.2929 -3.7954 0.1535 40 1 6.6750 -6.0875 -1.3244 41 1 5.9323 -5.5668 0.2070 42 1 5.4056 -9.2111 0.1570 43 1 6.4937 -2.9851 0.8302 44 1 8.5878 -1.7392 1.1850 45 1 10.1900 -1.4720 -0.6656 46 1 9.7022 -2.4581 -2.8685 47 1 7.6124 -3.7117 -3.2207 48 1 1.2330 -1.1569 -1.8101 49 1 2.6793 -0.1088 -1.8358 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280161968.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:42:58 Heat of formation + Delta-G solvation = -70.638113 kcal Electronic energy + Delta-G solvation = -31002.893291 eV Core-core repulsion = 26928.294891 eV Total energy + Delta-G solvation = -4074.598400 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 5.14 seconds Orbital eigenvalues (eV) -41.84008 -40.86986 -39.86642 -38.30756 -36.75580 -35.03879 -34.69419 -33.75353 -32.16889 -31.68323 -30.53119 -30.42617 -27.68562 -26.54211 -25.12030 -23.80939 -23.48656 -23.36364 -21.70751 -20.90198 -20.32505 -19.35094 -18.61963 -18.05606 -17.70837 -17.49078 -17.20879 -16.99697 -16.52123 -16.14373 -15.87924 -15.77797 -15.40882 -15.11122 -14.92804 -14.64576 -14.28916 -14.21093 -14.05494 -13.90314 -13.69291 -13.55749 -13.42487 -13.33840 -13.00479 -12.88579 -12.64369 -12.57471 -12.44360 -12.15671 -12.05333 -11.89237 -11.72015 -11.58294 -11.32460 -11.27111 -10.96412 -10.69708 -10.58016 -10.16273 -9.77709 -9.58193 -9.47437 -8.18689 -6.29028 0.49531 0.54383 1.40611 1.42263 1.49105 1.52443 1.66617 2.17757 2.41344 2.52699 2.90240 3.09095 3.17482 3.32905 3.53080 3.82928 3.98720 4.01581 4.07759 4.18749 4.19832 4.29883 4.32618 4.42050 4.50420 4.60585 4.64915 4.72523 4.74208 4.77950 4.87190 4.92001 4.97449 5.11374 5.15968 5.18111 5.23246 5.28499 5.36340 5.43289 5.59623 5.60681 5.62709 5.78442 5.86003 5.90138 6.09402 6.15431 6.21087 6.39086 6.82977 7.02057 7.28313 7.39708 7.60737 8.92134 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008087 B = 0.004038 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3461.631689 B = 6932.267831 C = 9484.446977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.088 4.088 3 C 0.528 3.472 4 N -0.835 5.835 5 O -0.586 6.586 6 C -0.110 4.110 7 C 0.096 3.904 8 N -0.643 5.643 9 C 0.721 3.279 10 O -0.636 6.636 11 N -0.709 5.709 12 C 0.219 3.781 13 H 0.058 0.942 14 C 0.039 3.961 15 C -0.527 4.527 16 H 0.053 0.947 17 C 0.011 3.989 18 N -0.926 5.926 19 Si 0.958 3.042 20 H -0.279 1.279 21 H -0.281 1.281 22 H -0.265 1.265 23 C -0.098 4.098 24 C -0.121 4.121 25 C -0.127 4.127 26 C -0.130 4.130 27 C -0.123 4.123 28 C -0.132 4.132 29 C 0.136 3.864 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.417 0.583 34 H 0.408 0.592 35 H 0.065 0.935 36 H 0.115 0.885 37 H 0.097 0.903 38 H 0.078 0.922 39 H 0.402 0.598 40 H 0.006 0.994 41 H 0.010 0.990 42 H 0.264 0.736 43 H 0.115 0.885 44 H 0.143 0.857 45 H 0.151 0.849 46 H 0.146 0.854 47 H 0.115 0.885 48 H 0.095 0.905 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.885 18.855 1.525 20.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.093 4.093 3 C 0.313 3.687 4 N -0.398 5.398 5 O -0.466 6.466 6 C -0.148 4.148 7 C -0.026 4.026 8 N -0.381 5.381 9 C 0.423 3.577 10 O -0.518 6.518 11 N -0.362 5.362 12 C 0.113 3.887 13 H 0.076 0.924 14 C 0.002 3.998 15 C -0.565 4.565 16 H 0.071 0.929 17 C -0.187 4.187 18 N -0.566 5.566 19 Si 0.783 3.217 20 H -0.205 1.205 21 H -0.206 1.206 22 H -0.189 1.189 23 C -0.099 4.099 24 C -0.140 4.140 25 C -0.145 4.145 26 C -0.147 4.147 27 C -0.140 4.140 28 C -0.150 4.150 29 C 0.013 3.987 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.248 0.752 34 H 0.240 0.760 35 H 0.084 0.916 36 H 0.133 0.867 37 H 0.115 0.885 38 H 0.097 0.903 39 H 0.237 0.763 40 H 0.024 0.976 41 H 0.028 0.972 42 H 0.073 0.927 43 H 0.133 0.867 44 H 0.161 0.839 45 H 0.169 0.831 46 H 0.164 0.836 47 H 0.133 0.867 48 H 0.113 0.887 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.099 18.949 1.372 20.653 hybrid contribution -0.573 -0.849 -0.248 1.054 sum -8.673 18.100 1.124 20.101 Atomic orbital electron populations 1.21910 0.88036 1.04792 1.04118 1.21714 0.99865 0.90855 0.96827 1.20594 0.78784 0.88052 0.81271 1.43714 1.54155 1.16004 1.25962 1.90722 1.39187 1.78364 1.38320 1.22750 1.02796 0.92994 0.96285 1.22790 1.00298 0.97858 0.81621 1.47772 1.34218 1.36975 1.19136 1.15528 0.78880 0.79835 0.83413 1.90831 1.70712 1.69764 1.20484 1.44930 1.35933 1.35042 1.20304 1.19613 0.81972 0.91134 0.95948 0.92376 1.19125 0.96328 0.88826 0.95537 1.21357 1.02846 0.96639 1.35684 0.92906 1.25786 0.99251 0.98871 0.94835 1.70077 1.33411 1.13929 1.39208 0.85553 0.79890 0.78428 0.77785 1.20508 1.20593 1.18924 1.20514 0.96703 0.97924 0.94793 1.21016 0.98084 0.98576 0.96295 1.21418 0.93825 0.98949 1.00299 1.21457 1.00289 1.00237 0.92766 1.21395 0.96547 0.97525 0.98582 1.21184 0.95343 1.00006 0.98495 1.21992 0.94510 0.87368 0.94878 0.89752 0.89673 0.90698 0.75170 0.76037 0.91598 0.86714 0.88505 0.90330 0.76253 0.97598 0.97152 0.92725 0.86736 0.83947 0.83092 0.83637 0.86686 0.88748 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.16 8.11 71.98 0.58 -0.58 16 2 C -0.09 -1.50 0.80 -52.04 -0.04 -1.54 16 3 C 0.53 10.85 6.58 87.65 0.58 11.43 16 4 N -0.83 -10.20 8.67 -173.53 -1.50 -11.71 16 5 O -0.59 -17.62 16.27 -3.04 -0.05 -17.67 16 6 C -0.11 -2.10 5.98 31.87 0.19 -1.91 16 7 C 0.10 2.12 6.95 86.79 0.60 2.72 16 8 N -0.64 -18.97 3.29 -827.00 -2.72 -21.69 16 9 C 0.72 28.47 8.50 179.06 1.52 29.99 16 10 O -0.64 -29.80 16.34 -3.99 -0.07 -29.87 16 11 N -0.71 -28.19 3.99 -461.42 -1.84 -30.03 16 12 C 0.22 9.80 2.12 44.25 0.09 9.89 16 13 H 0.06 2.89 7.44 -2.39 -0.02 2.87 16 14 C 0.04 2.02 4.50 29.85 0.13 2.15 16 15 C -0.53 -28.84 8.84 25.60 0.23 -28.61 16 16 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 17 C 0.01 0.62 5.46 84.66 0.46 1.08 16 18 N -0.93 -54.16 13.29 21.45 0.28 -53.87 16 19 Si 0.96 43.16 29.54 68.60 2.03 45.19 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 21 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 22 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 23 C -0.10 -3.99 4.91 -19.87 -0.10 -4.09 16 24 C -0.12 -4.43 9.33 22.27 0.21 -4.22 16 25 C -0.13 -3.87 10.05 22.27 0.22 -3.65 16 26 C -0.13 -3.62 10.05 22.27 0.22 -3.40 16 27 C -0.12 -3.75 10.05 22.27 0.22 -3.52 16 28 C -0.13 -4.96 9.67 22.27 0.22 -4.74 16 29 C 0.14 3.05 6.24 86.53 0.54 3.59 16 30 H 0.08 0.41 7.58 -2.38 -0.02 0.39 16 31 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.42 2.58 8.25 -92.71 -0.77 1.81 16 34 H 0.41 4.31 8.93 -92.71 -0.83 3.48 16 35 H 0.07 1.67 6.89 -2.39 -0.02 1.65 16 36 H 0.11 1.55 7.85 -2.39 -0.02 1.54 16 37 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.08 1.78 6.82 -2.39 -0.02 1.77 16 39 H 0.40 14.74 6.93 -92.71 -0.64 14.10 16 40 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 41 H 0.01 0.54 8.14 -2.39 -0.02 0.53 16 42 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 43 H 0.11 4.03 7.71 -2.91 -0.02 4.00 16 44 H 0.14 3.46 8.06 -2.91 -0.02 3.43 16 45 H 0.15 3.07 8.06 -2.91 -0.02 3.04 16 46 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 47 H 0.12 4.27 8.04 -2.91 -0.02 4.24 16 48 H 0.09 1.73 7.68 -2.39 -0.02 1.71 16 49 H 0.06 1.53 7.53 -2.39 -0.02 1.52 16 Total: -1.00 -80.44 403.41 0.77 -79.67 By element: Atomic # 1 Polarization: 36.65 SS G_CDS: -1.24 Total: 35.40 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: 5.89 Total: 4.59 kcal Atomic # 7 Polarization: -111.52 SS G_CDS: -5.78 Total: -117.30 kcal Atomic # 8 Polarization: -47.43 SS G_CDS: -0.11 Total: -47.54 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -80.44 0.77 -79.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280161968.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.028 kcal (2) G-P(sol) polarization free energy of solvation -80.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.14 seconds