Wall clock time and date at job start Wed Apr 1 2020 06:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50690 * 110.29194 * 2 1 4 4 N 1.34776 * 120.00169 * 300.70120 * 3 2 1 5 5 O 1.21289 * 119.99998 * 120.70166 * 3 2 1 6 6 C 1.54620 * 110.32720 * 122.24952 * 2 1 3 7 7 C 1.54937 * 102.84254 * 97.03957 * 6 2 1 8 8 N 1.48117 * 103.25211 * 37.37341 * 7 6 2 9 9 C 1.34781 * 127.02712 * 140.67594 * 8 7 6 10 10 O 1.21585 * 119.99551 * 180.02562 * 9 8 7 11 11 N 1.34778 * 120.00452 * 0.03869 * 9 8 7 12 12 C 1.46500 * 120.00031 * 179.97438 * 11 9 8 13 13 H 1.09004 * 109.47054 * 35.00463 * 12 11 9 14 14 C 1.53002 * 109.46596 * 155.00250 * 12 11 9 15 15 C 1.50698 * 109.47123 * 294.99544 * 14 12 11 16 16 H 1.08002 * 120.00390 * 0.02562 * 15 14 12 17 17 C 1.37883 * 119.99785 * 179.97438 * 15 14 12 18 18 N 1.31515 * 119.99649 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99931 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47324 * 89.99619 * 19 17 15 21 21 H 1.48501 * 109.46826 * 209.99461 * 19 17 15 22 22 H 1.48496 * 109.47115 * 329.99316 * 19 17 15 23 23 C 1.50698 * 109.47105 * 275.00451 * 12 11 9 24 24 C 1.38233 * 120.00104 * 319.72409 * 23 12 11 25 25 C 1.38234 * 119.99963 * 179.74703 * 24 23 12 26 26 C 1.38235 * 119.99804 * 0.55345 * 25 24 23 27 27 C 1.38227 * 120.00101 * 359.70150 * 26 25 24 28 28 C 1.38233 * 119.99966 * 140.00435 * 23 12 11 29 29 C 1.47481 * 105.93559 * 320.70809 * 8 7 6 30 30 H 1.08994 * 109.47357 * 180.68281 * 1 2 3 31 31 H 1.08998 * 109.46865 * 300.68043 * 1 2 3 32 32 H 1.08994 * 109.46919 * 60.67867 * 1 2 3 33 33 H 0.96997 * 119.99882 * 0.02562 * 4 3 2 34 34 H 0.97005 * 120.00257 * 179.97438 * 4 3 2 35 35 H 1.08994 * 110.73779 * 215.38215 * 6 2 1 36 36 H 1.09003 * 110.73798 * 338.70226 * 6 2 1 37 37 H 1.09000 * 110.66267 * 278.93290 * 7 6 2 38 38 H 1.08992 * 110.80325 * 155.88561 * 7 6 2 39 39 H 0.96998 * 119.99604 * 0.02562 * 11 9 8 40 40 H 1.08993 * 109.47485 * 55.00432 * 14 12 11 41 41 H 1.09001 * 109.46793 * 175.00247 * 14 12 11 42 42 H 0.97001 * 119.99512 * 180.02562 * 18 17 15 43 43 H 1.08003 * 119.99556 * 0.02562 * 24 23 12 44 44 H 1.08005 * 120.00088 * 180.27358 * 25 24 23 45 45 H 1.07999 * 119.99962 * 179.72441 * 26 25 24 46 46 H 1.07999 * 120.00043 * 179.97438 * 27 26 25 47 47 H 1.07999 * 119.99887 * 359.97438 * 28 23 12 48 48 H 1.08995 * 109.91505 * 266.08423 * 29 8 7 49 49 H 1.09003 * 109.90907 * 144.80386 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0527 1.4134 0.0000 4 7 1.7275 2.2521 -1.0036 5 8 2.7660 1.7962 0.9032 6 6 2.0672 -0.7737 1.2262 7 6 2.3604 -2.1796 0.6450 8 7 2.8804 -1.8850 -0.7103 9 6 3.8922 -2.5095 -1.3449 10 8 4.2156 -2.1605 -2.4638 11 7 4.5455 -3.5210 -0.7394 12 6 5.6449 -4.2001 -1.4294 13 1 6.1937 -3.4794 -2.0358 14 6 6.5882 -4.8215 -0.3974 15 6 7.2392 -3.7285 0.4104 16 1 7.0034 -2.6941 0.2083 17 6 8.1351 -4.0492 1.4083 18 7 8.7028 -3.0953 2.1136 19 14 8.5424 -5.8383 1.7583 20 1 9.7004 -6.2542 0.9268 21 1 8.8824 -5.9965 3.1951 22 1 7.3682 -6.6864 1.4311 23 6 5.0881 -5.2830 -2.3174 24 6 4.0400 -6.0684 -1.8754 25 6 3.5258 -7.0582 -2.6919 26 6 4.0673 -7.2701 -3.9460 27 6 5.1188 -6.4882 -4.3860 28 6 5.6293 -5.4946 -3.5717 29 6 2.0649 -0.7682 -1.2229 30 1 -0.3634 -1.0275 0.0122 31 1 -0.3633 0.5244 0.8838 32 1 -0.3633 0.5032 -0.8960 33 1 1.1567 1.9461 -1.7257 34 1 2.0636 3.1621 -1.0034 35 1 2.9806 -0.3136 1.6031 36 1 1.3106 -0.8297 2.0090 37 1 1.4460 -2.7699 0.5862 38 1 3.1123 -2.6960 1.2416 39 1 4.2871 -3.7998 0.1530 40 1 6.0216 -5.4752 0.2656 41 1 7.3562 -5.4011 -0.9098 42 1 9.3334 -3.3209 2.8153 43 1 3.6200 -5.9057 -0.8937 44 1 2.7040 -7.6690 -2.3483 45 1 3.6685 -8.0464 -4.5823 46 1 5.5421 -6.6540 -5.3656 47 1 6.4508 -4.8836 -3.9154 48 1 1.2330 -1.1553 -1.8112 49 1 2.6809 -0.1092 -1.8349 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280161973.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:43:07 Heat of formation + Delta-G solvation = -41.458335 kcal Electronic energy + Delta-G solvation = -30976.579048 eV Core-core repulsion = 26903.245979 eV Total energy + Delta-G solvation = -4073.333070 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.76898 -39.60515 -38.66226 -37.16371 -35.19841 -34.07478 -32.87595 -32.46838 -30.93489 -30.50120 -29.47215 -29.26822 -26.77946 -25.06868 -23.92935 -22.55016 -22.28672 -21.74119 -20.25849 -19.50990 -19.42771 -18.16259 -17.24414 -16.96690 -16.57809 -16.35921 -16.11923 -15.58399 -14.99308 -14.76735 -14.65285 -14.35798 -14.26083 -14.09048 -13.50763 -13.39097 -13.14037 -13.05795 -12.83350 -12.74627 -12.63714 -12.42817 -12.36312 -12.11384 -11.75425 -11.65994 -11.31597 -11.24309 -11.06860 -10.86111 -10.71570 -10.61012 -10.14116 -10.00875 -9.85298 -9.83310 -9.68897 -9.29803 -8.70111 -8.60863 -8.57709 -8.32105 -8.21082 -6.07384 -4.07343 1.69758 1.72971 2.47509 2.87849 3.27561 3.30799 3.35857 3.37576 3.66308 4.09796 4.15699 4.35431 4.40395 4.53120 4.59885 4.84475 5.04138 5.16760 5.18814 5.20434 5.25404 5.26576 5.29610 5.44042 5.46865 5.56269 5.59747 5.67407 5.74156 5.82507 5.83744 5.86338 6.03369 6.16359 6.25407 6.30799 6.37758 6.45788 6.60733 6.75611 6.78065 6.84805 6.95878 7.07091 7.12731 7.32006 7.33148 7.47964 7.68004 8.10359 8.41965 8.48634 8.99410 9.06989 9.52871 11.05364 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008470 B = 0.003939 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3305.105424 B = 7107.091554 C = 9399.294460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.100 4.100 3 C 0.532 3.468 4 N -0.855 5.855 5 O -0.531 6.531 6 C -0.116 4.116 7 C 0.100 3.900 8 N -0.640 5.640 9 C 0.729 3.271 10 O -0.594 6.594 11 N -0.712 5.712 12 C 0.212 3.788 13 H 0.092 0.908 14 C -0.013 4.013 15 C -0.520 4.520 16 H 0.076 0.924 17 C 0.071 3.929 18 N -0.897 5.897 19 Si 0.875 3.125 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.265 1.265 23 C -0.075 4.075 24 C -0.107 4.107 25 C -0.126 4.126 26 C -0.134 4.134 27 C -0.123 4.123 28 C -0.107 4.107 29 C 0.141 3.859 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.400 0.600 34 H 0.402 0.598 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.396 0.604 40 H 0.023 0.977 41 H 0.030 0.970 42 H 0.263 0.737 43 H 0.116 0.884 44 H 0.114 0.886 45 H 0.114 0.886 46 H 0.117 0.883 47 H 0.122 0.878 48 H 0.072 0.928 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.071 0.792 -7.196 21.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.104 4.104 3 C 0.316 3.684 4 N -0.419 5.419 5 O -0.406 6.406 6 C -0.154 4.154 7 C -0.023 4.023 8 N -0.380 5.380 9 C 0.431 3.569 10 O -0.472 6.472 11 N -0.365 5.365 12 C 0.107 3.893 13 H 0.110 0.890 14 C -0.051 4.051 15 C -0.558 4.558 16 H 0.094 0.906 17 C -0.131 4.131 18 N -0.535 5.535 19 Si 0.702 3.298 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.190 1.190 23 C -0.077 4.077 24 C -0.126 4.126 25 C -0.144 4.144 26 C -0.152 4.152 27 C -0.141 4.141 28 C -0.125 4.125 29 C 0.017 3.983 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.229 0.771 34 H 0.233 0.767 35 H 0.115 0.885 36 H 0.104 0.896 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.231 0.769 40 H 0.041 0.959 41 H 0.048 0.952 42 H 0.073 0.927 43 H 0.134 0.866 44 H 0.132 0.868 45 H 0.132 0.868 46 H 0.135 0.865 47 H 0.140 0.860 48 H 0.090 0.910 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -19.123 1.085 -7.254 20.481 hybrid contribution 0.056 -0.759 0.362 0.842 sum -19.067 0.327 -6.892 20.277 Atomic orbital electron populations 1.21854 0.91286 1.03418 1.02573 1.21749 0.97502 0.92470 0.98659 1.20289 0.79477 0.87208 0.81448 1.43834 1.55064 1.16234 1.26724 1.90773 1.36503 1.77238 1.36127 1.22765 1.03346 0.94109 0.95213 1.22512 0.99307 0.97004 0.83518 1.47708 1.35394 1.36890 1.17980 1.15358 0.78198 0.79652 0.83660 1.90879 1.68836 1.68613 1.18889 1.45024 1.36236 1.35351 1.19854 1.19843 0.85625 0.90901 0.92930 0.89034 1.19875 0.94263 0.97151 0.93807 1.21015 1.24526 0.93881 1.16349 0.90602 1.24988 0.95496 0.96901 0.95688 1.69917 1.29251 1.32150 1.22183 0.86869 0.79357 0.86092 0.77499 1.20216 1.21384 1.18989 1.20625 0.95408 0.96811 0.94833 1.20901 0.96755 0.95435 0.99466 1.21039 1.00161 0.98483 0.94702 1.21003 0.97648 1.00102 0.96476 1.21054 0.97206 0.96312 0.99505 1.21045 0.99988 0.97907 0.93575 1.21736 0.94548 0.88220 0.93824 0.90817 0.91551 0.91918 0.77109 0.76744 0.88458 0.89574 0.91133 0.89551 0.76879 0.95921 0.95156 0.92664 0.86645 0.86755 0.86819 0.86539 0.86012 0.91000 0.90479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.84 8.10 37.16 0.30 -0.54 16 2 C -0.10 -1.00 0.80 -154.29 -0.12 -1.12 16 3 C 0.53 6.39 6.58 -10.99 -0.07 6.32 16 4 N -0.85 -6.72 8.67 31.22 0.27 -6.45 16 5 O -0.53 -8.96 16.28 5.55 0.09 -8.87 16 6 C -0.12 -1.32 5.97 -24.86 -0.15 -1.46 16 7 C 0.10 1.16 6.95 -2.13 -0.01 1.15 16 8 N -0.64 -9.57 3.29 -175.49 -0.58 -10.15 16 9 C 0.73 13.95 8.50 -86.91 -0.74 13.21 16 10 O -0.59 -13.36 16.34 5.29 0.09 -13.28 16 11 N -0.71 -13.34 4.01 -59.81 -0.24 -13.58 16 12 C 0.21 4.31 2.11 -69.08 -0.15 4.16 16 13 H 0.09 2.09 7.44 -51.93 -0.39 1.70 16 14 C -0.01 -0.30 3.56 -27.88 -0.10 -0.40 16 15 C -0.52 -14.18 9.39 -34.44 -0.32 -14.51 16 16 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 17 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 18 N -0.90 -27.21 13.96 55.43 0.77 -26.44 16 19 Si 0.87 21.05 27.47 -169.99 -4.67 16.38 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 23 C -0.08 -1.36 4.91 -104.63 -0.51 -1.87 16 24 C -0.11 -1.72 9.32 -39.58 -0.37 -2.09 16 25 C -0.13 -1.77 10.05 -39.58 -0.40 -2.16 16 26 C -0.13 -1.81 10.05 -39.59 -0.40 -2.21 16 27 C -0.12 -1.77 10.05 -39.59 -0.40 -2.17 16 28 C -0.11 -1.79 9.67 -39.58 -0.38 -2.18 16 29 C 0.14 1.69 6.24 -2.98 -0.02 1.67 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.28 7.62 -51.93 -0.40 -0.12 16 33 H 0.40 1.95 8.28 -40.82 -0.34 1.61 16 34 H 0.40 2.84 8.93 -40.82 -0.36 2.47 16 35 H 0.10 1.46 6.90 -51.93 -0.36 1.10 16 36 H 0.09 0.76 7.85 -51.93 -0.41 0.36 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.09 1.07 6.82 -51.93 -0.35 0.71 16 39 H 0.40 6.81 6.93 -40.82 -0.28 6.53 16 40 H 0.02 0.50 7.20 -51.93 -0.37 0.13 16 41 H 0.03 0.69 7.57 -51.93 -0.39 0.30 16 42 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 43 H 0.12 1.72 7.73 -52.48 -0.41 1.32 16 44 H 0.11 1.30 8.06 -52.48 -0.42 0.88 16 45 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 46 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 47 H 0.12 1.97 8.04 -52.49 -0.42 1.55 16 48 H 0.07 0.71 7.68 -51.93 -0.40 0.31 16 49 H 0.08 1.05 7.53 -51.93 -0.39 0.66 16 LS Contribution 399.90 15.07 6.03 6.03 Total: -1.00 -37.00 399.90 -9.57 -46.57 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -7.39 Total: 12.07 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -3.94 Total: -2.29 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: 0.23 Total: -56.61 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: 0.18 Total: -22.14 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.67 Total: 16.38 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -37.00 -9.57 -46.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280161973.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.115 kcal (2) G-P(sol) polarization free energy of solvation -36.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds