Wall clock time and date at job start Wed Apr 1 2020 06:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50690 * 110.29194 * 2 1 4 4 N 1.34776 * 120.00169 * 300.70120 * 3 2 1 5 5 O 1.21289 * 119.99998 * 120.70166 * 3 2 1 6 6 C 1.54620 * 110.32720 * 122.24952 * 2 1 3 7 7 C 1.54937 * 102.84254 * 97.03957 * 6 2 1 8 8 N 1.48117 * 103.25211 * 37.37341 * 7 6 2 9 9 C 1.34781 * 127.02712 * 140.67594 * 8 7 6 10 10 O 1.21585 * 119.99551 * 180.02562 * 9 8 7 11 11 N 1.34778 * 120.00452 * 0.03869 * 9 8 7 12 12 C 1.46500 * 120.00031 * 179.97438 * 11 9 8 13 13 H 1.09004 * 109.47054 * 35.00463 * 12 11 9 14 14 C 1.53002 * 109.46596 * 155.00250 * 12 11 9 15 15 C 1.50698 * 109.47123 * 294.99544 * 14 12 11 16 16 H 1.08002 * 120.00390 * 0.02562 * 15 14 12 17 17 C 1.37883 * 119.99785 * 179.97438 * 15 14 12 18 18 N 1.31515 * 119.99649 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99931 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47324 * 89.99619 * 19 17 15 21 21 H 1.48501 * 109.46826 * 209.99461 * 19 17 15 22 22 H 1.48496 * 109.47115 * 329.99316 * 19 17 15 23 23 C 1.50698 * 109.47105 * 275.00451 * 12 11 9 24 24 C 1.38233 * 120.00104 * 319.72409 * 23 12 11 25 25 C 1.38234 * 119.99963 * 179.74703 * 24 23 12 26 26 C 1.38235 * 119.99804 * 0.55345 * 25 24 23 27 27 C 1.38227 * 120.00101 * 359.70150 * 26 25 24 28 28 C 1.38233 * 119.99966 * 140.00435 * 23 12 11 29 29 C 1.47481 * 105.93559 * 320.70809 * 8 7 6 30 30 H 1.08994 * 109.47357 * 180.68281 * 1 2 3 31 31 H 1.08998 * 109.46865 * 300.68043 * 1 2 3 32 32 H 1.08994 * 109.46919 * 60.67867 * 1 2 3 33 33 H 0.96997 * 119.99882 * 0.02562 * 4 3 2 34 34 H 0.97005 * 120.00257 * 179.97438 * 4 3 2 35 35 H 1.08994 * 110.73779 * 215.38215 * 6 2 1 36 36 H 1.09003 * 110.73798 * 338.70226 * 6 2 1 37 37 H 1.09000 * 110.66267 * 278.93290 * 7 6 2 38 38 H 1.08992 * 110.80325 * 155.88561 * 7 6 2 39 39 H 0.96998 * 119.99604 * 0.02562 * 11 9 8 40 40 H 1.08993 * 109.47485 * 55.00432 * 14 12 11 41 41 H 1.09001 * 109.46793 * 175.00247 * 14 12 11 42 42 H 0.97001 * 119.99512 * 180.02562 * 18 17 15 43 43 H 1.08003 * 119.99556 * 0.02562 * 24 23 12 44 44 H 1.08005 * 120.00088 * 180.27358 * 25 24 23 45 45 H 1.07999 * 119.99962 * 179.72441 * 26 25 24 46 46 H 1.07999 * 120.00043 * 179.97438 * 27 26 25 47 47 H 1.07999 * 119.99887 * 359.97438 * 28 23 12 48 48 H 1.08995 * 109.91505 * 266.08423 * 29 8 7 49 49 H 1.09003 * 109.90907 * 144.80386 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0527 1.4134 0.0000 4 7 1.7275 2.2521 -1.0036 5 8 2.7660 1.7962 0.9032 6 6 2.0672 -0.7737 1.2262 7 6 2.3604 -2.1796 0.6450 8 7 2.8804 -1.8850 -0.7103 9 6 3.8922 -2.5095 -1.3449 10 8 4.2156 -2.1605 -2.4638 11 7 4.5455 -3.5210 -0.7394 12 6 5.6449 -4.2001 -1.4294 13 1 6.1937 -3.4794 -2.0358 14 6 6.5882 -4.8215 -0.3974 15 6 7.2392 -3.7285 0.4104 16 1 7.0034 -2.6941 0.2083 17 6 8.1351 -4.0492 1.4083 18 7 8.7028 -3.0953 2.1136 19 14 8.5424 -5.8383 1.7583 20 1 9.7004 -6.2542 0.9268 21 1 8.8824 -5.9965 3.1951 22 1 7.3682 -6.6864 1.4311 23 6 5.0881 -5.2830 -2.3174 24 6 4.0400 -6.0684 -1.8754 25 6 3.5258 -7.0582 -2.6919 26 6 4.0673 -7.2701 -3.9460 27 6 5.1188 -6.4882 -4.3860 28 6 5.6293 -5.4946 -3.5717 29 6 2.0649 -0.7682 -1.2229 30 1 -0.3634 -1.0275 0.0122 31 1 -0.3633 0.5244 0.8838 32 1 -0.3633 0.5032 -0.8960 33 1 1.1567 1.9461 -1.7257 34 1 2.0636 3.1621 -1.0034 35 1 2.9806 -0.3136 1.6031 36 1 1.3106 -0.8297 2.0090 37 1 1.4460 -2.7699 0.5862 38 1 3.1123 -2.6960 1.2416 39 1 4.2871 -3.7998 0.1530 40 1 6.0216 -5.4752 0.2656 41 1 7.3562 -5.4011 -0.9098 42 1 9.3334 -3.3209 2.8153 43 1 3.6200 -5.9057 -0.8937 44 1 2.7040 -7.6690 -2.3483 45 1 3.6685 -8.0464 -4.5823 46 1 5.5421 -6.6540 -5.3656 47 1 6.4508 -4.8836 -3.9154 48 1 1.2330 -1.1553 -1.8112 49 1 2.6809 -0.1092 -1.8349 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280161973.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:43:06 Heat of formation + Delta-G solvation = -68.960505 kcal Electronic energy + Delta-G solvation = -30977.771632 eV Core-core repulsion = 26903.245979 eV Total energy + Delta-G solvation = -4074.525653 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.85280 -40.88865 -39.86711 -38.32997 -36.79559 -35.06121 -34.68890 -33.78681 -32.23538 -31.66342 -30.96909 -30.43726 -27.75326 -26.52805 -25.08973 -23.61647 -23.48617 -23.24912 -21.69189 -20.92883 -20.34482 -19.34320 -19.05541 -18.12641 -17.66817 -17.50504 -17.37210 -16.84874 -16.39481 -16.21623 -15.85139 -15.74744 -15.42741 -15.13785 -14.99418 -14.72110 -14.46686 -14.19680 -14.11094 -13.92232 -13.79557 -13.55044 -13.51439 -13.36370 -13.03487 -12.98612 -12.58992 -12.54334 -12.40609 -12.05815 -11.92156 -11.76363 -11.73615 -11.69027 -11.43930 -11.28817 -10.98406 -10.78921 -10.72245 -10.18086 -9.74379 -9.58503 -9.47339 -8.28518 -6.34349 0.51022 0.57798 1.37211 1.37487 1.47262 1.49869 1.65858 2.17143 2.35213 2.51797 2.91203 3.04352 3.13255 3.31891 3.53422 3.82442 3.93767 4.03759 4.08166 4.18827 4.22386 4.31518 4.33752 4.35830 4.51147 4.57702 4.62471 4.72612 4.74760 4.77179 4.84953 4.93307 4.97684 5.01103 5.15158 5.15799 5.19493 5.23349 5.27745 5.37920 5.54309 5.58932 5.66215 5.66586 5.84077 5.88276 6.07692 6.19797 6.25253 6.38562 6.72754 7.00475 7.27951 7.29780 7.59608 8.88270 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008470 B = 0.003939 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3305.105424 B = 7107.091554 C = 9399.294460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.088 4.088 3 C 0.522 3.478 4 N -0.834 5.834 5 O -0.591 6.591 6 C -0.116 4.116 7 C 0.099 3.901 8 N -0.643 5.643 9 C 0.721 3.279 10 O -0.637 6.637 11 N -0.710 5.710 12 C 0.222 3.778 13 H 0.049 0.951 14 C -0.003 4.003 15 C -0.520 4.520 16 H 0.023 0.977 17 C 0.010 3.990 18 N -0.950 5.950 19 Si 0.949 3.051 20 H -0.271 1.271 21 H -0.285 1.285 22 H -0.239 1.239 23 C -0.099 4.099 24 C -0.117 4.117 25 C -0.122 4.122 26 C -0.127 4.127 27 C -0.123 4.123 28 C -0.131 4.131 29 C 0.137 3.863 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.418 0.582 34 H 0.407 0.593 35 H 0.050 0.950 36 H 0.118 0.882 37 H 0.114 0.886 38 H 0.072 0.928 39 H 0.403 0.597 40 H 0.039 0.961 41 H 0.032 0.968 42 H 0.266 0.734 43 H 0.123 0.877 44 H 0.148 0.852 45 H 0.151 0.849 46 H 0.142 0.858 47 H 0.110 0.890 48 H 0.106 0.894 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.797 -2.604 -8.159 25.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.092 4.092 3 C 0.307 3.693 4 N -0.397 5.397 5 O -0.471 6.471 6 C -0.155 4.155 7 C -0.023 4.023 8 N -0.381 5.381 9 C 0.423 3.577 10 O -0.519 6.519 11 N -0.363 5.363 12 C 0.117 3.883 13 H 0.068 0.932 14 C -0.040 4.040 15 C -0.558 4.558 16 H 0.042 0.958 17 C -0.187 4.187 18 N -0.590 5.590 19 Si 0.772 3.228 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.162 1.162 23 C -0.100 4.100 24 C -0.135 4.135 25 C -0.140 4.140 26 C -0.145 4.145 27 C -0.141 4.141 28 C -0.150 4.150 29 C 0.014 3.986 30 H 0.111 0.889 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.250 0.750 34 H 0.238 0.762 35 H 0.069 0.931 36 H 0.136 0.864 37 H 0.132 0.868 38 H 0.090 0.910 39 H 0.239 0.761 40 H 0.057 0.943 41 H 0.050 0.950 42 H 0.075 0.925 43 H 0.141 0.859 44 H 0.166 0.834 45 H 0.169 0.831 46 H 0.160 0.840 47 H 0.128 0.872 48 H 0.124 0.876 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -22.928 -2.294 -8.245 24.473 hybrid contribution 1.186 0.437 0.581 1.390 sum -21.742 -1.857 -7.664 23.128 Atomic orbital electron populations 1.21899 0.87348 1.05156 1.04094 1.21737 1.00253 0.90434 0.96760 1.20774 0.78781 0.88421 0.81298 1.43690 1.54081 1.16029 1.25938 1.90754 1.39242 1.78480 1.38639 1.22738 1.02344 0.93733 0.96681 1.22782 1.00429 0.97614 0.81448 1.47783 1.34371 1.36863 1.19110 1.15543 0.78939 0.79783 0.83468 1.90829 1.70343 1.69835 1.20924 1.44894 1.35800 1.35578 1.20025 1.19424 0.85753 0.90883 0.92262 0.93237 1.19724 0.94647 0.95715 0.93959 1.21171 1.24794 0.92909 1.16932 0.95845 1.25959 0.95210 1.02236 0.95312 1.70093 1.30521 1.35099 1.23314 0.85683 0.79995 0.79778 0.77312 1.19682 1.21048 1.16174 1.20378 0.97331 0.97104 0.95197 1.21053 0.96220 0.95853 1.00362 1.21435 1.00452 0.97621 0.94447 1.21477 0.96418 0.99956 0.96601 1.21368 0.97324 0.95274 1.00123 1.21162 1.00539 0.99267 0.94045 1.22014 0.94621 0.87310 0.94700 0.88915 0.90988 0.89569 0.75031 0.76162 0.93108 0.86415 0.86772 0.90974 0.76141 0.94290 0.94987 0.92543 0.85929 0.83382 0.83112 0.83986 0.87176 0.87638 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.12 8.10 71.98 0.58 -0.54 16 2 C -0.09 -1.66 0.80 -52.04 -0.04 -1.70 16 3 C 0.52 12.75 6.58 87.65 0.58 13.32 16 4 N -0.83 -12.62 8.67 -173.54 -1.50 -14.12 16 5 O -0.59 -21.22 16.28 -3.06 -0.05 -21.27 16 6 C -0.12 -2.62 5.97 31.81 0.19 -2.43 16 7 C 0.10 2.23 6.95 86.73 0.60 2.84 16 8 N -0.64 -19.49 3.29 -827.37 -2.72 -22.21 16 9 C 0.72 28.97 8.50 179.05 1.52 30.49 16 10 O -0.64 -30.50 16.34 -3.98 -0.07 -30.57 16 11 N -0.71 -27.96 4.01 -461.40 -1.85 -29.81 16 12 C 0.22 9.55 2.11 44.25 0.09 9.64 16 13 H 0.05 2.49 7.44 -2.39 -0.02 2.47 16 14 C 0.00 -0.13 3.56 29.85 0.11 -0.02 16 15 C -0.52 -29.98 9.39 25.60 0.24 -29.74 16 16 H 0.02 1.55 7.99 -2.91 -0.02 1.53 16 17 C 0.01 0.58 5.47 84.66 0.46 1.04 16 18 N -0.95 -60.37 13.96 21.45 0.30 -60.07 16 19 Si 0.95 43.69 27.47 68.60 1.88 45.57 16 20 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 21 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 22 H -0.24 -9.89 6.54 99.48 0.65 -9.24 16 23 C -0.10 -3.58 4.91 -19.87 -0.10 -3.68 16 24 C -0.12 -3.52 9.32 22.27 0.21 -3.31 16 25 C -0.12 -2.93 10.05 22.27 0.22 -2.71 16 26 C -0.13 -2.88 10.05 22.27 0.22 -2.66 16 27 C -0.12 -3.25 10.05 22.27 0.22 -3.03 16 28 C -0.13 -4.45 9.67 22.27 0.22 -4.24 16 29 C 0.14 3.18 6.24 86.53 0.54 3.72 16 30 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.09 0.38 7.62 -2.39 -0.02 0.37 16 33 H 0.42 3.33 8.28 -92.71 -0.77 2.56 16 34 H 0.41 5.67 8.93 -92.70 -0.83 4.84 16 35 H 0.05 1.64 6.90 -2.39 -0.02 1.63 16 36 H 0.12 1.87 7.85 -2.39 -0.02 1.85 16 37 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.07 1.82 6.82 -2.39 -0.02 1.81 16 39 H 0.40 14.38 6.93 -92.71 -0.64 13.74 16 40 H 0.04 1.69 7.20 -2.39 -0.02 1.67 16 41 H 0.03 1.48 7.57 -2.39 -0.02 1.46 16 42 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 43 H 0.12 3.41 7.73 -2.91 -0.02 3.39 16 44 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 45 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 46 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 47 H 0.11 3.81 8.04 -2.91 -0.02 3.79 16 48 H 0.11 1.77 7.68 -2.39 -0.02 1.75 16 49 H 0.05 1.48 7.53 -2.39 -0.02 1.46 16 Total: -1.00 -89.20 399.90 0.56 -88.63 By element: Atomic # 1 Polarization: 38.16 SS G_CDS: -1.30 Total: 36.85 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: 5.87 Total: 6.98 kcal Atomic # 7 Polarization: -120.43 SS G_CDS: -5.78 Total: -126.21 kcal Atomic # 8 Polarization: -51.72 SS G_CDS: -0.11 Total: -51.83 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.88 Total: 45.57 kcal Total: -89.20 0.56 -88.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280161973.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.674 kcal (2) G-P(sol) polarization free energy of solvation -89.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds