Wall clock time and date at job start Wed Apr 1 2020 05:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38840 * 120.34184 * 2 1 4 4 C 1.38366 * 118.49125 * 180.02562 * 3 2 1 5 5 C 1.39035 * 119.10047 * 0.02562 * 4 3 2 6 6 N 1.39406 * 119.69634 * 179.97438 * 5 4 3 7 7 C 1.34775 * 120.00283 * 185.08352 * 6 5 4 8 8 O 1.21275 * 119.99770 * 354.92176 * 7 6 5 9 9 C 1.50693 * 120.00189 * 174.91992 * 7 6 5 10 10 H 1.09004 * 109.49929 * 299.93397 * 9 7 6 11 11 C 1.53041 * 109.50100 * 179.83984 * 9 7 6 12 12 C 1.53040 * 109.54069 * 178.68234 * 11 9 7 13 13 C 1.52758 * 109.38261 * 61.23809 * 12 11 9 14 14 N 1.46918 * 109.00982 * 305.58744 * 13 12 11 15 15 C 1.34779 * 120.63328 * 233.58599 * 14 13 12 16 16 O 1.21281 * 119.99864 * 179.72073 * 15 14 13 17 17 C 1.50697 * 119.99888 * 359.71605 * 15 14 13 18 18 C 1.52997 * 109.47188 * 180.02562 * 17 15 14 19 19 C 1.50699 * 109.47080 * 180.02562 * 18 17 15 20 20 H 1.07999 * 120.00046 * 0.02562 * 19 18 17 21 21 C 1.37879 * 120.00103 * 180.02562 * 19 18 17 22 22 N 1.31516 * 120.00368 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99865 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.46803 * 90.00448 * 23 21 19 25 25 H 1.48497 * 109.47344 * 330.00817 * 23 21 19 26 26 H 1.48500 * 109.47445 * 210.00247 * 23 21 19 27 27 C 1.46932 * 118.73830 * 53.30823 * 14 13 12 28 28 N 1.32352 * 120.61050 * 0.27299 * 5 4 3 29 29 C 1.31942 * 121.63178 * 359.44049 * 28 5 4 30 30 H 1.08995 * 109.47595 * 89.99705 * 1 2 3 31 31 H 1.08998 * 109.47377 * 210.00326 * 1 2 3 32 32 H 1.09007 * 109.46917 * 329.99780 * 1 2 3 33 33 H 1.08000 * 120.75658 * 0.04661 * 3 2 1 34 34 H 1.07996 * 120.44880 * 180.02562 * 4 3 2 35 35 H 0.97002 * 119.99569 * 5.08179 * 6 5 4 36 36 H 1.09003 * 109.45614 * 298.70115 * 11 9 7 37 37 H 1.08997 * 109.45793 * 58.65572 * 11 9 7 38 38 H 1.09000 * 109.49796 * 181.31200 * 12 11 9 39 39 H 1.08995 * 109.49721 * 301.37694 * 12 11 9 40 40 H 1.08996 * 109.51153 * 185.70418 * 13 12 11 41 41 H 1.08999 * 109.43242 * 65.42268 * 13 12 11 42 42 H 1.09004 * 109.47019 * 60.00089 * 17 15 14 43 43 H 1.09001 * 109.47515 * 300.00582 * 17 15 14 44 44 H 1.09004 * 109.47078 * 60.00113 * 18 17 15 45 45 H 1.09003 * 109.47409 * 299.99883 * 18 17 15 46 46 H 0.96994 * 120.00517 * 179.97438 * 22 21 19 47 47 H 1.08997 * 109.58344 * 66.43583 * 27 14 13 48 48 H 1.09001 * 109.58788 * 186.71077 * 27 14 13 49 49 H 1.07997 * 119.57097 * 180.29177 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2084 1.1982 0.0000 4 6 3.5913 1.1535 -0.0005 5 6 4.2279 -0.0825 -0.0016 6 7 5.6207 -0.1420 -0.0027 7 6 6.2443 -1.3322 -0.1072 8 8 5.5971 -2.3579 -0.1074 9 6 7.7457 -1.3886 -0.2237 10 1 8.0619 -0.8478 -1.1157 11 6 8.1959 -2.8479 -0.3239 12 6 9.7177 -2.9048 -0.4752 13 6 10.3733 -2.2795 0.7547 14 7 9.8359 -0.9258 0.9472 15 6 10.6634 0.1327 1.0543 16 8 10.2072 1.2459 1.2080 17 6 12.1554 -0.0670 0.9832 18 6 12.8584 1.2838 1.1314 19 6 14.3504 1.0841 1.0597 20 1 14.7565 0.0929 0.9217 21 6 15.1969 2.1667 1.1701 22 7 16.4990 1.9925 1.1080 23 14 14.4944 3.8812 1.4080 24 1 14.3512 4.1603 2.8595 25 1 13.1640 3.9661 0.7540 26 1 15.4097 4.8800 0.7999 27 6 8.3791 -0.7469 1.0147 28 7 3.5238 -1.2032 -0.0075 29 6 2.2045 -1.1916 -0.0016 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5139 33 1 1.6864 2.1437 0.0008 34 1 4.1684 2.0664 -0.0001 35 1 6.1410 0.6733 0.0717 36 1 7.9006 -3.3818 0.5794 37 1 7.7270 -3.3138 -1.1905 38 1 10.0353 -3.9432 -0.5699 39 1 10.0157 -2.3506 -1.3652 40 1 11.4516 -2.2268 0.6053 41 1 10.1532 -2.8881 1.6318 42 1 12.4173 -0.5099 0.0222 43 1 12.4719 -0.7311 1.7875 44 1 12.5965 1.7262 2.0926 45 1 12.5421 1.9482 0.3273 46 1 17.0946 2.7541 1.1854 47 1 7.9932 -1.2279 1.9134 48 1 8.1423 0.3168 1.0393 49 1 1.6632 -2.1261 -0.0020 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292581759.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:32 Heat of formation + Delta-G solvation = -61.027367 kcal Electronic energy + Delta-G solvation = -29542.106953 eV Core-core repulsion = 25467.925307 eV Total energy + Delta-G solvation = -4074.181647 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -42.07712 -41.23284 -40.23602 -38.19519 -36.29395 -35.57619 -34.27995 -33.84036 -33.22683 -32.71995 -31.93151 -28.47053 -27.74754 -26.16773 -25.52043 -24.74075 -23.25108 -22.96621 -22.11068 -21.04390 -19.94195 -19.34486 -18.99644 -18.25391 -17.78326 -17.13564 -16.81938 -16.59908 -16.28376 -16.19251 -16.10683 -15.69954 -15.50845 -15.08322 -15.05906 -14.74858 -14.69873 -14.67726 -14.30470 -13.96151 -13.81259 -13.73974 -13.51633 -13.35566 -13.24743 -12.90078 -12.66991 -12.54081 -12.20612 -11.99598 -11.96941 -11.81046 -11.74311 -11.68410 -11.62850 -11.36437 -11.30167 -10.77735 -10.76327 -10.70606 -10.09568 -9.70712 -9.16010 -8.29571 -6.32342 0.04781 0.35072 1.34577 1.36647 1.46107 1.51006 1.65254 1.74020 2.02033 2.36373 2.87290 3.06276 3.26527 3.47837 3.67961 3.73478 3.84836 3.88478 4.01748 4.03718 4.08027 4.13774 4.17451 4.23890 4.35985 4.46071 4.48499 4.57248 4.59268 4.69903 4.77488 4.87060 4.87867 4.89576 4.94878 4.96841 5.10161 5.12060 5.14829 5.32292 5.34774 5.36670 5.38606 5.46145 5.52707 5.62467 5.80156 6.09056 6.24692 6.34569 6.74167 6.88011 7.18496 7.24147 7.32979 8.85927 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016884 B = 0.002084 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.005222 B =13433.236161 C =14925.265408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.167 4.167 3 C -0.052 4.052 4 C -0.199 4.199 5 C 0.324 3.676 6 N -0.657 5.657 7 C 0.516 3.484 8 O -0.506 6.506 9 C -0.109 4.109 10 H 0.112 0.888 11 C -0.094 4.094 12 C -0.127 4.127 13 C 0.096 3.904 14 N -0.609 5.609 15 C 0.518 3.482 16 O -0.580 6.580 17 C -0.115 4.115 18 C 0.005 3.995 19 C -0.528 4.528 20 H 0.051 0.949 21 C 0.013 3.987 22 N -0.944 5.944 23 Si 0.937 3.063 24 H -0.270 1.270 25 H -0.259 1.259 26 H -0.280 1.280 27 C 0.122 3.878 28 N -0.515 5.515 29 C 0.107 3.893 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.169 0.831 34 H 0.160 0.840 35 H 0.430 0.570 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.105 0.895 39 H 0.069 0.931 40 H 0.099 0.901 41 H 0.086 0.914 42 H 0.103 0.897 43 H 0.101 0.899 44 H 0.008 0.992 45 H 0.011 0.989 46 H 0.266 0.734 47 H 0.075 0.925 48 H 0.089 0.911 49 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.014 -7.016 -3.750 32.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.170 4.170 3 C -0.078 4.078 4 C -0.222 4.222 5 C 0.094 3.906 6 N -0.305 5.305 7 C 0.302 3.698 8 O -0.377 6.377 9 C -0.132 4.132 10 H 0.130 0.870 11 C -0.133 4.133 12 C -0.165 4.165 13 C -0.026 4.026 14 N -0.342 5.342 15 C 0.308 3.692 16 O -0.460 6.460 17 C -0.154 4.154 18 C -0.033 4.033 19 C -0.566 4.566 20 H 0.069 0.931 21 C -0.185 4.185 22 N -0.584 5.584 23 Si 0.762 3.238 24 H -0.195 1.195 25 H -0.183 1.183 26 H -0.205 1.205 27 C -0.001 4.001 28 N -0.229 5.229 29 C -0.050 4.050 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.186 0.814 34 H 0.178 0.822 35 H 0.269 0.731 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.123 0.877 39 H 0.087 0.913 40 H 0.118 0.882 41 H 0.104 0.896 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.027 0.973 45 H 0.030 0.970 46 H 0.075 0.925 47 H 0.094 0.906 48 H 0.107 0.893 49 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -31.989 -7.934 -3.681 33.164 hybrid contribution 0.198 1.916 0.167 1.934 sum -31.792 -6.018 -3.515 32.547 Atomic orbital electron populations 1.20712 0.87933 1.04051 1.03276 1.21202 0.99253 0.93556 1.02980 1.21706 0.92748 0.99522 0.93818 1.21827 0.96476 0.96971 1.06915 1.18814 0.84900 0.90564 0.96334 1.43711 1.03903 1.11323 1.71546 1.21001 0.90422 0.82943 0.75445 1.90783 1.67562 1.33891 1.45464 1.21719 0.89191 1.01100 1.01153 0.87018 1.21317 0.96003 0.92498 1.03432 1.21849 0.93912 1.02993 0.97763 1.22010 1.00161 0.80985 0.99427 1.48154 1.05690 1.08121 1.72283 1.21218 0.90017 0.83605 0.74316 1.90618 1.78647 1.25688 1.51051 1.21518 0.88783 1.00366 1.04767 1.19233 0.93520 0.94175 0.96345 1.21428 0.90961 0.94904 1.49260 0.93119 1.25803 0.94970 1.03187 0.94501 1.70022 1.03592 1.32486 1.52312 0.85842 0.78959 0.79880 0.79114 1.19512 1.18300 1.20549 1.21431 0.80118 1.02025 0.96532 1.67556 1.09475 1.30003 1.15909 1.22886 0.88183 0.99125 0.94854 0.90229 0.90649 0.90054 0.81395 0.82219 0.73063 0.91241 0.90981 0.87686 0.91258 0.88244 0.89592 0.87867 0.88106 0.97342 0.97032 0.92455 0.90628 0.89272 0.81688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.68 10.03 71.24 0.71 0.03 16 2 C -0.17 -2.22 5.90 -19.76 -0.12 -2.33 16 3 C -0.05 -0.62 9.85 22.44 0.22 -0.40 16 4 C -0.20 -2.97 9.94 22.49 0.22 -2.74 16 5 C 0.32 6.98 7.42 132.92 0.99 7.97 16 6 N -0.66 -12.82 5.32 -308.46 -1.64 -14.45 16 7 C 0.52 11.80 7.12 87.65 0.62 12.43 16 8 O -0.51 -15.25 14.24 -3.01 -0.04 -15.30 16 9 C -0.11 -2.07 2.69 -11.47 -0.03 -2.10 16 10 H 0.11 1.99 8.14 -2.38 -0.02 1.97 16 11 C -0.09 -1.65 4.46 30.62 0.14 -1.51 16 12 C -0.13 -1.89 6.06 30.53 0.19 -1.70 16 13 C 0.10 1.72 6.31 86.22 0.54 2.26 16 14 N -0.61 -14.87 2.98 -819.77 -2.44 -17.31 16 15 C 0.52 17.41 7.70 87.66 0.67 18.08 16 16 O -0.58 -23.75 15.39 -3.03 -0.05 -23.79 16 17 C -0.11 -4.15 3.99 29.85 0.12 -4.03 16 18 C 0.01 0.25 3.33 29.85 0.10 0.35 16 19 C -0.53 -29.79 9.66 25.60 0.25 -29.55 16 20 H 0.05 3.01 7.99 -2.91 -0.02 2.99 16 21 C 0.01 0.76 5.47 84.65 0.46 1.23 16 22 N -0.94 -58.39 13.96 21.45 0.30 -58.09 16 23 Si 0.94 45.93 27.47 68.60 1.88 47.81 16 24 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 25 H -0.26 -12.48 6.54 99.48 0.65 -11.83 16 26 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 27 C 0.12 2.60 5.56 86.36 0.48 3.08 16 28 N -0.51 -13.12 7.89 -193.04 -1.52 -14.64 16 29 C 0.11 2.02 10.85 84.64 0.92 2.94 16 30 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.07 0.42 8.09 -2.39 -0.02 0.40 16 32 H 0.08 0.33 8.09 -2.38 -0.02 0.31 16 33 H 0.17 0.89 8.06 -2.91 -0.02 0.87 16 34 H 0.16 1.52 8.06 -2.91 -0.02 1.49 16 35 H 0.43 6.04 8.11 -92.71 -0.75 5.29 16 36 H 0.07 1.29 8.13 -2.39 -0.02 1.27 16 37 H 0.07 1.32 8.07 -2.39 -0.02 1.30 16 38 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.10 1.78 5.93 -2.39 -0.01 1.77 16 41 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.10 3.38 7.68 -2.38 -0.02 3.36 16 43 H 0.10 3.34 7.95 -2.39 -0.02 3.32 16 44 H 0.01 0.41 7.53 -2.38 -0.02 0.39 16 45 H 0.01 0.57 7.16 -2.39 -0.02 0.56 16 46 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 47 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 48 H 0.09 2.02 6.50 -2.39 -0.02 2.01 16 49 H 0.17 2.49 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -81.50 396.91 3.13 -78.37 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 0.15 Total: 13.41 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: 6.49 Total: 4.00 kcal Atomic # 7 Polarization: -99.20 SS G_CDS: -5.30 Total: -104.50 kcal Atomic # 8 Polarization: -39.00 SS G_CDS: -0.09 Total: -39.09 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 1.88 Total: 47.81 kcal Total: -81.50 3.13 -78.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292581759.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.340 kcal (2) G-P(sol) polarization free energy of solvation -81.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds