Wall clock time and date at job start Wed Apr 1 2020 05:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 110.22014 * 2 1 4 4 C 1.53004 * 109.46928 * 300.70139 * 3 2 1 5 5 C 1.50701 * 109.47196 * 179.97438 * 4 3 2 6 6 O 1.21278 * 119.99757 * 359.97438 * 5 4 3 7 7 N 1.34776 * 120.00201 * 180.02562 * 5 4 3 8 8 C 1.46500 * 119.99651 * 359.97438 * 7 5 4 9 9 C 1.50697 * 109.47008 * 90.00155 * 8 7 5 10 10 H 1.08004 * 120.00591 * 0.02562 * 9 8 7 11 11 C 1.37883 * 120.00167 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99922 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00294 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47085 * 90.00558 * 13 11 9 15 15 H 1.48501 * 109.47491 * 210.00319 * 13 11 9 16 16 H 1.48507 * 109.47455 * 330.00700 * 13 11 9 17 17 C 1.46498 * 120.00098 * 179.97438 * 7 5 4 18 18 C 1.50700 * 109.46844 * 89.99904 * 17 7 5 19 19 C 1.38669 * 120.41997 * 269.72055 * 18 17 7 20 20 C 1.38630 * 118.42120 * 179.78381 * 19 18 17 21 21 C 1.38228 * 119.16008 * 0.47242 * 20 19 18 22 22 N 1.31852 * 120.76126 * 359.76888 * 21 20 19 23 23 C 1.31889 * 121.72898 * 0.02562 * 22 21 20 24 24 C 1.54487 * 110.24610 * 121.93196 * 2 1 3 25 25 C 1.54624 * 101.76438 * 93.58314 * 24 2 1 26 26 C 1.51274 * 104.19859 * 24.79967 * 25 24 2 27 27 O 1.21284 * 124.94311 * 163.75197 * 26 25 24 28 28 N 1.34623 * 110.14849 * 343.76772 * 26 25 24 29 29 H 1.09002 * 109.47153 * 59.99948 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00139 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47082 * 60.69632 * 3 2 1 33 33 H 1.08997 * 109.47371 * 180.69975 * 3 2 1 34 34 H 1.08999 * 109.46825 * 299.99650 * 4 3 2 35 35 H 1.08997 * 109.47228 * 59.99749 * 4 3 2 36 36 H 1.08994 * 109.47074 * 209.99790 * 8 7 5 37 37 H 1.08999 * 109.47387 * 329.99943 * 8 7 5 38 38 H 0.96995 * 120.00488 * 179.97438 * 12 11 9 39 39 H 1.08997 * 109.47187 * 210.00218 * 17 7 5 40 40 H 1.09002 * 109.46939 * 330.00101 * 17 7 5 41 41 H 1.08007 * 120.79007 * 0.02562 * 19 18 17 42 42 H 1.07995 * 120.41791 * 180.26221 * 20 19 18 43 43 H 1.08001 * 119.61558 * 179.78961 * 21 20 19 44 44 H 1.08001 * 119.61460 * 180.02562 * 23 22 21 45 45 H 1.09002 * 110.96417 * 211.70256 * 24 2 1 46 46 H 1.09002 * 110.96636 * 335.42546 * 24 2 1 47 47 H 1.09003 * 110.48375 * 143.48330 * 25 24 2 48 48 H 1.09000 * 110.48647 * 265.98208 * 25 24 2 49 49 H 0.97000 * 124.46439 * 179.53974 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0588 1.4357 0.0000 4 6 1.5439 2.1688 -1.2404 5 6 2.0642 3.5831 -1.2401 6 8 2.7763 3.9671 -0.3366 7 7 1.7374 4.4216 -2.2434 8 6 0.8768 3.9579 -3.3345 9 6 -0.5650 4.2201 -2.9831 10 1 -0.8153 4.6860 -2.0414 11 6 -1.5647 3.8662 -3.8643 12 7 -1.2600 3.2994 -5.0112 13 14 -3.3519 4.1905 -3.4285 14 1 -3.7430 5.5384 -3.9136 15 1 -4.2122 3.1645 -4.0707 16 1 -3.5216 4.1265 -1.9545 17 6 2.2428 5.7967 -2.2428 18 6 3.5628 5.8469 -2.9681 19 6 4.7511 5.6651 -2.2769 20 6 5.9412 5.7151 -2.9861 21 6 5.9047 5.9527 -4.3473 22 7 4.7560 6.1260 -4.9710 23 6 3.6046 6.0811 -4.3293 24 6 2.0646 -0.7666 1.2301 25 6 2.2624 -2.1879 0.6542 26 6 2.4508 -1.9641 -0.8299 27 8 2.9078 -2.7793 -1.6029 28 7 2.0379 -0.7283 -1.1686 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.7124 1.9505 0.8962 33 1 3.1486 1.4215 -0.0125 34 1 1.8903 1.6540 -2.1365 35 1 0.4541 2.1829 -1.2278 36 1 1.1307 4.4925 -4.2497 37 1 1.0254 2.8886 -3.4852 38 1 -1.9633 3.0500 -5.6310 39 1 1.5270 6.4470 -2.7455 40 1 2.3799 6.1329 -1.2151 41 1 4.7493 5.4848 -1.2120 42 1 6.8852 5.5736 -2.4808 43 1 6.8276 5.9966 -4.9064 44 1 2.6838 6.2273 -4.8743 45 1 3.0120 -0.3477 1.5692 46 1 1.3311 -0.7703 2.0364 47 1 3.1484 -2.6542 1.0853 48 1 1.3809 -2.8012 0.8408 49 1 2.0715 -0.3654 -2.0675 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355572618.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:53:11 Heat of formation + Delta-G solvation = -51.055363 kcal Electronic energy + Delta-G solvation = -30830.582195 eV Core-core repulsion = 26756.832967 eV Total energy + Delta-G solvation = -4073.749228 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.68499 -40.07913 -39.00111 -37.17420 -35.34098 -33.35655 -32.73212 -32.14544 -31.39222 -31.33538 -29.23532 -27.62349 -26.54856 -25.42812 -23.52520 -23.28284 -22.78816 -21.67209 -20.79986 -20.00502 -18.33449 -17.15528 -16.99019 -16.64545 -16.31488 -16.12041 -15.80517 -15.53747 -15.33558 -14.97468 -14.61742 -14.47298 -14.09071 -13.73008 -13.63030 -13.48174 -13.05855 -13.02480 -12.78902 -12.69531 -12.57725 -12.45213 -12.20105 -12.06269 -11.79473 -11.75521 -11.47677 -11.21999 -11.06838 -11.03645 -10.87075 -10.69138 -10.51286 -10.28171 -9.91426 -9.84537 -9.63598 -9.27492 -9.25274 -9.08676 -8.78161 -8.64286 -7.89579 -6.28276 -4.37064 1.27104 1.49353 2.62309 3.15289 3.21781 3.24160 3.27881 3.39182 3.70719 4.13263 4.22525 4.26973 4.37025 4.62905 4.64724 4.90156 4.94690 5.00200 5.04322 5.12719 5.16963 5.22654 5.27839 5.36256 5.45313 5.48377 5.53305 5.60472 5.65509 5.77339 5.81016 5.84588 5.90181 6.01050 6.04867 6.11746 6.15200 6.27106 6.31911 6.46145 6.54737 6.61999 6.87037 6.90548 7.05740 7.10198 7.36910 7.65316 7.93265 8.15701 8.18115 8.29092 8.67005 8.86363 9.31782 10.78167 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.006719 B = 0.004318 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4166.471898 B = 6482.191186 C = 9265.533870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.155 3.845 3 C -0.101 4.101 4 C -0.138 4.138 5 C 0.519 3.481 6 O -0.575 6.575 7 N -0.590 5.590 8 C 0.238 3.762 9 C -0.542 4.542 10 H 0.062 0.938 11 C 0.068 3.932 12 N -0.887 5.887 13 Si 0.895 3.105 14 H -0.279 1.279 15 H -0.285 1.285 16 H -0.273 1.273 17 C 0.160 3.840 18 C -0.145 4.145 19 C -0.056 4.056 20 C -0.182 4.182 21 C 0.090 3.910 22 N -0.489 5.489 23 C 0.114 3.886 24 C -0.123 4.123 25 C -0.156 4.156 26 C 0.518 3.482 27 O -0.543 6.543 28 N -0.718 5.718 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.110 0.890 36 H 0.036 0.964 37 H 0.038 0.962 38 H 0.266 0.734 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.137 0.863 42 H 0.129 0.871 43 H 0.150 0.850 44 H 0.157 0.843 45 H 0.084 0.916 46 H 0.091 0.909 47 H 0.098 0.902 48 H 0.102 0.898 49 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.002 -1.881 10.336 12.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.069 3.931 3 C -0.140 4.140 4 C -0.177 4.177 5 C 0.308 3.692 6 O -0.457 6.457 7 N -0.320 5.320 8 C 0.118 3.882 9 C -0.580 4.580 10 H 0.080 0.920 11 C -0.136 4.136 12 N -0.525 5.525 13 Si 0.722 3.278 14 H -0.205 1.205 15 H -0.211 1.211 16 H -0.197 1.197 17 C 0.036 3.964 18 C -0.148 4.148 19 C -0.083 4.083 20 C -0.201 4.201 21 C -0.068 4.068 22 N -0.198 5.198 23 C -0.043 4.043 24 C -0.161 4.161 25 C -0.196 4.196 26 C 0.305 3.695 27 O -0.421 6.421 28 N -0.374 5.374 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.128 0.872 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.076 0.924 39 H 0.109 0.891 40 H 0.102 0.898 41 H 0.155 0.845 42 H 0.147 0.853 43 H 0.167 0.833 44 H 0.175 0.825 45 H 0.103 0.897 46 H 0.110 0.890 47 H 0.117 0.883 48 H 0.120 0.880 49 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 7.492 -2.083 9.404 12.203 hybrid contribution -1.156 0.191 0.407 1.240 sum 6.337 -1.891 9.812 11.832 Atomic orbital electron populations 1.22275 0.93491 1.02430 1.03885 1.21125 0.94486 0.92444 0.85085 1.21655 1.01329 0.92053 0.98948 1.21685 1.04123 0.92975 0.98956 1.20478 0.79698 0.87781 0.81212 1.90566 1.39768 1.78275 1.37103 1.48261 1.48366 1.10498 1.24838 1.19460 0.88388 0.95984 0.84350 1.21448 0.90646 1.41561 1.04361 0.92003 1.24935 0.99332 0.94641 0.94714 1.69913 1.33605 1.40384 1.08597 0.86543 0.84289 0.78216 0.78724 1.20462 1.21060 1.19746 1.20124 0.90623 0.85224 1.00404 1.21432 0.96972 1.00661 0.95763 1.21655 0.91658 0.94000 1.00967 1.22108 0.99037 1.03044 0.95958 1.22700 0.96246 0.95744 0.92073 1.67704 0.98556 1.13206 1.40287 1.22814 0.96129 0.94084 0.91271 1.22704 1.02809 0.93657 0.96889 1.22337 1.04814 0.98830 0.93601 1.20920 0.76145 0.81566 0.90916 1.90744 1.45937 1.47739 1.57684 1.46535 1.63612 1.15547 1.11679 0.90650 0.90989 0.92384 0.89781 0.90935 0.89837 0.87199 0.94626 0.94452 0.92379 0.89122 0.89839 0.84490 0.85284 0.83294 0.82537 0.89718 0.89049 0.88312 0.87976 0.74885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 8.41 37.16 0.31 -1.41 16 2 C 0.16 1.66 0.87 -130.90 -0.11 1.55 16 3 C -0.10 -1.27 3.70 -26.73 -0.10 -1.37 16 4 C -0.14 -2.12 3.76 -27.88 -0.10 -2.23 16 5 C 0.52 9.42 7.67 -10.99 -0.08 9.33 16 6 O -0.58 -11.02 15.22 5.56 0.08 -10.93 16 7 N -0.59 -11.07 2.44 -176.44 -0.43 -11.51 16 8 C 0.24 5.13 4.97 -5.19 -0.03 5.11 16 9 C -0.54 -12.84 9.28 -34.44 -0.32 -13.16 16 10 H 0.06 1.49 7.81 -52.48 -0.41 1.08 16 11 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 12 N -0.89 -23.18 13.29 55.43 0.74 -22.44 16 13 Si 0.89 19.36 29.54 -169.99 -5.02 14.34 16 14 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 15 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 16 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 17 C 0.16 2.69 5.56 -5.20 -0.03 2.66 16 18 C -0.15 -2.31 5.48 -104.48 -0.57 -2.88 16 19 C -0.06 -0.83 9.86 -39.28 -0.39 -1.22 16 20 C -0.18 -2.35 10.11 -39.44 -0.40 -2.75 16 21 C 0.09 1.22 11.18 -17.55 -0.20 1.02 16 22 N -0.49 -7.92 10.36 -13.25 -0.14 -8.06 16 23 C 0.11 1.86 10.86 -17.55 -0.19 1.67 16 24 C -0.12 -1.02 6.21 -25.10 -0.16 -1.18 16 25 C -0.16 -1.44 6.86 -26.75 -0.18 -1.63 16 26 C 0.52 7.06 8.44 -10.77 -0.09 6.97 16 27 O -0.54 -9.73 18.03 5.55 0.10 -9.63 16 28 N -0.72 -9.01 5.40 -46.57 -0.25 -9.26 16 29 H 0.07 0.94 6.49 -51.93 -0.34 0.61 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 33 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 34 H 0.08 1.29 6.15 -51.93 -0.32 0.97 16 35 H 0.11 1.80 6.33 -51.93 -0.33 1.47 16 36 H 0.04 0.82 8.07 -51.93 -0.42 0.40 16 37 H 0.04 0.84 6.44 -51.93 -0.33 0.51 16 38 H 0.27 6.70 8.31 -40.82 -0.34 6.37 16 39 H 0.09 1.48 8.02 -51.93 -0.42 1.07 16 40 H 0.08 1.37 7.37 -51.93 -0.38 0.99 16 41 H 0.14 2.02 7.71 -52.48 -0.40 1.61 16 42 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 43 H 0.15 1.56 8.06 -52.49 -0.42 1.13 16 44 H 0.16 2.49 8.06 -52.49 -0.42 2.07 16 45 H 0.08 0.68 7.91 -51.93 -0.41 0.27 16 46 H 0.09 0.59 7.89 -51.93 -0.41 0.18 16 47 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.41 5.42 7.68 -40.82 -0.31 5.11 16 LS Contribution 403.42 15.07 6.08 6.08 Total: -1.00 -30.21 403.42 -9.00 -39.21 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -7.42 Total: 10.15 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -2.74 Total: 2.06 kcal Atomic # 7 Polarization: -51.19 SS G_CDS: -0.08 Total: -51.28 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: 0.18 Total: -20.57 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.34 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -30.21 -9.00 -39.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355572618.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.848 kcal (2) G-P(sol) polarization free energy of solvation -30.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds