Wall clock time and date at job start Wed Apr 1 2020 06:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50710 * 110.62684 * 2 1 4 4 N 1.34777 * 119.99645 * 303.10337 * 3 2 1 5 5 O 1.21276 * 119.99751 * 123.10480 * 3 2 1 6 6 C 1.55139 * 110.70738 * 236.70340 * 2 1 3 7 7 C 1.54897 * 101.65256 * 205.96011 * 6 2 1 8 8 N 1.47846 * 104.79654 * 37.07175 * 7 6 2 9 9 C 1.46900 * 111.00181 * 213.63385 * 8 7 6 10 10 C 1.50698 * 109.46880 * 290.84015 * 9 8 7 11 11 O 1.21287 * 120.00262 * 353.73214 * 10 9 8 12 12 N 1.34774 * 120.00002 * 173.72715 * 10 9 8 13 13 C 1.46502 * 120.00149 * 184.49501 * 12 10 9 14 14 C 1.50702 * 109.47414 * 269.99977 * 13 12 10 15 15 H 1.08001 * 119.99490 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00142 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99554 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99932 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46889 * 60.00366 * 18 16 14 20 20 H 1.48506 * 109.46920 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47210 * 300.00018 * 18 16 14 22 22 C 1.39926 * 119.99858 * 4.49579 * 12 10 9 23 23 C 1.38873 * 120.07316 * 247.83658 * 22 12 10 24 24 C 1.38111 * 119.92846 * 179.97438 * 23 22 12 25 25 C 1.38280 * 120.07187 * 0.02562 * 24 23 22 26 26 C 1.38277 * 120.14150 * 359.97438 * 25 24 23 27 27 C 1.38108 * 120.07452 * 359.97438 * 26 25 24 28 28 C 1.47436 * 108.56758 * 335.90347 * 8 7 6 29 29 H 1.08997 * 109.47503 * 296.89387 * 1 2 3 30 30 H 1.09004 * 109.46937 * 56.89636 * 1 2 3 31 31 H 1.09005 * 109.47313 * 176.89309 * 1 2 3 32 32 H 0.96996 * 120.00516 * 0.02562 * 4 3 2 33 33 H 0.97006 * 119.99345 * 180.02562 * 4 3 2 34 34 H 1.08996 * 110.98990 * 324.05714 * 6 2 1 35 35 H 1.09007 * 110.98736 * 87.83451 * 6 2 1 36 36 H 1.08998 * 110.37590 * 278.24085 * 7 6 2 37 37 H 1.09003 * 110.37015 * 155.89949 * 7 6 2 38 38 H 1.09002 * 109.47017 * 170.84510 * 9 8 7 39 39 H 1.08993 * 109.47196 * 50.83865 * 9 8 7 40 40 H 1.08994 * 109.47254 * 30.00766 * 13 12 10 41 41 H 1.09009 * 109.46640 * 150.00033 * 13 12 10 42 42 H 0.97011 * 119.99506 * 179.97438 * 17 16 14 43 43 H 1.08002 * 120.03602 * 0.02562 * 23 22 12 44 44 H 1.08003 * 119.95938 * 180.02562 * 24 23 22 45 45 H 1.08002 * 119.92845 * 179.70443 * 25 24 23 46 46 H 1.08008 * 119.96431 * 179.97438 * 26 25 24 47 47 H 1.07999 * 120.04326 * 180.02562 * 27 26 25 48 48 H 1.08998 * 109.89300 * 120.39279 * 28 8 7 49 49 H 1.09002 * 109.89260 * 241.42402 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0609 1.4105 0.0000 4 7 1.7017 2.2657 -0.9778 5 8 2.8114 1.7759 0.8798 6 6 2.0786 -0.7967 -1.2129 7 6 3.4650 -1.2476 -0.6899 8 7 3.2490 -1.5488 0.7414 9 6 4.4406 -1.2189 1.5346 10 6 5.5502 -2.1814 1.1981 11 8 5.3345 -3.1235 0.4654 12 7 6.7825 -1.9951 1.7112 13 6 7.8844 -2.8720 1.3072 14 6 7.9510 -4.0561 2.2369 15 1 7.2429 -4.1467 3.0474 16 6 8.9157 -5.0238 2.0529 17 7 9.7781 -4.9132 1.0662 18 14 8.9977 -6.4919 3.2049 19 1 7.7186 -7.2437 3.1405 20 1 10.1147 -7.3807 2.7954 21 1 9.2245 -6.0190 4.5941 22 6 7.0094 -0.9643 2.6298 23 6 7.8023 0.1199 2.2773 24 6 8.0239 1.1360 3.1861 25 6 7.4575 1.0742 4.4461 26 6 6.6675 -0.0040 4.8002 27 6 6.4412 -1.0228 3.8957 28 6 2.0756 -0.7884 1.2092 29 1 -0.3634 0.4648 0.9165 30 1 -0.3633 0.5613 -0.8609 31 1 -0.3634 -1.0262 -0.0557 32 1 1.1012 1.9735 -1.6813 33 1 2.0437 3.1734 -0.9779 34 1 1.4460 -1.6563 -1.4338 35 1 2.1806 -0.1545 -2.0879 36 1 4.1930 -0.4442 -0.8029 37 1 3.7984 -2.1402 -1.2194 38 1 4.2031 -1.2948 2.5957 39 1 4.7595 -0.2022 1.3054 40 1 7.7173 -3.2194 0.2877 41 1 8.8234 -2.3203 1.3536 42 1 10.4571 -5.5938 0.9369 43 1 8.2446 0.1689 1.2932 44 1 8.6401 1.9796 2.9123 45 1 7.6362 1.8677 5.1567 46 1 6.2269 -0.0495 5.7853 47 1 5.8238 -1.8645 4.1727 48 1 1.3132 -1.4736 1.5797 49 1 2.3714 -0.0999 2.0008 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361571028.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:05:31 Heat of formation + Delta-G solvation = -31.526225 kcal Electronic energy + Delta-G solvation = -31359.571009 eV Core-core repulsion = 27286.668628 eV Total energy + Delta-G solvation = -4072.902381 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.81694 -39.73659 -38.24460 -37.39428 -34.76538 -34.34762 -32.96038 -32.55668 -30.63313 -30.03144 -29.30325 -28.07662 -26.58705 -25.22215 -23.36589 -22.78503 -22.33893 -21.99723 -21.02098 -19.58153 -18.92854 -17.84095 -17.07481 -16.59524 -16.43088 -16.09910 -15.64297 -15.43729 -15.01722 -14.96864 -14.47080 -14.34454 -14.12947 -14.02849 -13.74568 -13.46066 -13.15002 -13.07506 -12.93524 -12.70817 -12.44001 -12.30140 -12.12895 -11.90021 -11.59779 -11.39923 -11.20912 -11.12684 -11.10667 -10.97556 -10.81155 -10.77302 -10.56706 -10.11642 -10.02272 -9.97591 -9.67038 -9.14224 -8.60218 -8.52827 -8.38465 -8.07238 -7.57333 -6.00356 -4.04083 1.66262 1.73702 2.37458 3.19417 3.36718 3.39591 3.40201 3.46151 3.67568 4.08670 4.12530 4.32122 4.47825 4.48454 4.51449 4.79494 5.08368 5.14374 5.23800 5.24794 5.25325 5.27260 5.34973 5.43080 5.45447 5.54940 5.59861 5.69820 5.72998 5.77794 5.79755 5.90172 5.90861 5.94878 6.14014 6.21380 6.34397 6.47644 6.68124 6.81318 6.89188 6.95786 6.99563 7.07876 7.15063 7.27532 7.41659 7.57777 7.95663 7.98759 8.25151 8.45441 8.93305 9.10584 9.60063 11.08015 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011497 B = 0.003552 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.737508 B = 7881.025980 C = 9339.956335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.109 4.109 3 C 0.530 3.470 4 N -0.855 5.855 5 O -0.534 6.534 6 C -0.113 4.113 7 C 0.045 3.955 8 N -0.503 5.503 9 C 0.036 3.964 10 C 0.513 3.487 11 O -0.509 6.509 12 N -0.566 5.566 13 C 0.251 3.749 14 C -0.522 4.522 15 H 0.057 0.943 16 C 0.062 3.938 17 N -0.896 5.896 18 Si 0.898 3.102 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.277 1.277 22 C 0.166 3.834 23 C -0.126 4.126 24 C -0.109 4.109 25 C -0.135 4.135 26 C -0.109 4.109 27 C -0.125 4.125 28 C 0.058 3.942 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.400 0.600 33 H 0.401 0.599 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.041 0.959 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.063 0.937 40 H 0.045 0.955 41 H 0.033 0.967 42 H 0.263 0.737 43 H 0.122 0.878 44 H 0.120 0.880 45 H 0.117 0.883 46 H 0.120 0.880 47 H 0.123 0.877 48 H 0.087 0.913 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.246 16.701 -2.147 24.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.114 4.114 3 C 0.314 3.686 4 N -0.418 5.418 5 O -0.410 6.410 6 C -0.152 4.152 7 C -0.083 4.083 8 N -0.227 5.227 9 C -0.096 4.096 10 C 0.300 3.700 11 O -0.382 6.382 12 N -0.295 5.295 13 C 0.133 3.867 14 C -0.561 4.561 15 H 0.076 0.924 16 C -0.140 4.140 17 N -0.536 5.536 18 Si 0.726 3.274 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.202 1.202 22 C 0.074 3.926 23 C -0.145 4.145 24 C -0.128 4.128 25 C -0.153 4.153 26 C -0.128 4.128 27 C -0.145 4.145 28 C -0.070 4.070 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.229 0.771 33 H 0.231 0.769 34 H 0.109 0.891 35 H 0.093 0.907 36 H 0.059 0.941 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.063 0.937 41 H 0.051 0.949 42 H 0.073 0.927 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.135 0.865 46 H 0.138 0.862 47 H 0.141 0.859 48 H 0.105 0.895 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.796 15.551 -1.958 22.973 hybrid contribution 0.328 0.317 0.252 0.521 sum -16.468 15.867 -1.706 22.932 Atomic orbital electron populations 1.21742 0.91505 1.03451 1.02256 1.22083 0.97620 0.92179 0.99476 1.20410 0.79908 0.87303 0.80981 1.43832 1.52601 1.15950 1.29446 1.90761 1.35427 1.78128 1.36649 1.22859 0.97392 0.99589 0.95331 1.23113 0.95372 1.00858 0.88940 1.63350 1.02717 1.54263 1.02323 1.22266 0.90517 0.97287 0.99492 1.20258 0.82605 0.85981 0.81143 1.90665 1.80948 1.30261 1.36365 1.45991 1.11027 1.30526 1.41979 1.19375 0.82359 0.87891 0.97034 1.21338 1.14865 1.06167 1.13693 0.92439 1.24902 0.95375 0.98089 0.95623 1.69924 1.18036 1.35280 1.30321 0.86549 0.77648 0.82304 0.80907 1.20099 1.21195 1.20239 1.17734 0.96962 0.88300 0.89628 1.21294 0.99913 0.93204 1.00136 1.20943 0.99743 0.98351 0.93741 1.21032 0.98968 0.98660 0.96658 1.20954 0.98820 0.94008 0.98985 1.21371 1.01696 0.98923 0.92484 1.22886 0.93469 0.95094 0.95576 0.91886 0.92185 0.90668 0.77120 0.76852 0.89063 0.90733 0.94068 0.88517 0.88426 0.91859 0.93671 0.94859 0.92704 0.85983 0.86226 0.86470 0.86188 0.85941 0.89521 0.90753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.84 8.39 37.16 0.31 -0.53 16 2 C -0.11 -1.05 0.77 -153.83 -0.12 -1.17 16 3 C 0.53 5.71 6.64 -10.98 -0.07 5.63 16 4 N -0.85 -5.57 8.67 31.22 0.27 -5.30 16 5 O -0.53 -8.13 16.28 5.56 0.09 -8.04 16 6 C -0.11 -1.10 6.01 -24.60 -0.15 -1.25 16 7 C 0.04 0.65 5.63 -2.30 -0.01 0.64 16 8 N -0.50 -8.01 4.82 -232.70 -1.12 -9.13 16 9 C 0.04 0.63 3.73 -4.98 -0.02 0.62 16 10 C 0.51 11.37 7.26 -10.99 -0.08 11.29 16 11 O -0.51 -13.05 14.95 5.55 0.08 -12.97 16 12 N -0.57 -12.87 2.51 -114.73 -0.29 -13.15 16 13 C 0.25 6.81 5.08 -5.19 -0.03 6.78 16 14 C -0.52 -15.29 9.39 -34.44 -0.32 -15.61 16 15 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 16 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 17 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 18 Si 0.90 22.51 29.54 -169.99 -5.02 17.49 16 19 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 C 0.17 3.25 4.36 -83.69 -0.37 2.88 16 23 C -0.13 -2.20 9.69 -39.39 -0.38 -2.58 16 24 C -0.11 -1.60 10.04 -39.61 -0.40 -1.99 16 25 C -0.13 -1.85 10.04 -39.55 -0.40 -2.25 16 26 C -0.11 -1.59 10.04 -39.61 -0.40 -1.99 16 27 C -0.13 -2.19 8.53 -39.39 -0.34 -2.53 16 28 C 0.06 0.73 5.85 -2.84 -0.02 0.71 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.26 7.41 -51.93 -0.38 -0.13 16 31 H 0.07 0.45 8.11 -51.93 -0.42 0.03 16 32 H 0.40 1.44 8.10 -40.82 -0.33 1.11 16 33 H 0.40 2.29 8.93 -40.82 -0.36 1.93 16 34 H 0.09 0.81 8.02 -51.93 -0.42 0.39 16 35 H 0.07 0.57 7.95 -51.93 -0.41 0.16 16 36 H 0.04 0.64 7.62 -51.93 -0.40 0.25 16 37 H 0.10 1.61 7.53 -51.93 -0.39 1.22 16 38 H 0.10 1.64 7.02 -51.93 -0.36 1.27 16 39 H 0.06 1.14 7.70 -51.93 -0.40 0.74 16 40 H 0.05 1.35 7.49 -51.93 -0.39 0.96 16 41 H 0.03 0.92 7.86 -51.92 -0.41 0.51 16 42 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 43 H 0.12 2.09 8.06 -52.49 -0.42 1.67 16 44 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 45 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 46 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 47 H 0.12 2.15 7.98 -52.49 -0.42 1.73 16 48 H 0.09 0.97 7.82 -51.93 -0.41 0.57 16 49 H 0.07 1.02 6.28 -51.93 -0.33 0.70 16 LS Contribution 400.58 15.07 6.04 6.04 Total: -1.00 -36.61 400.58 -9.58 -46.19 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -7.49 Total: 4.91 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -2.88 Total: 0.38 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: -0.40 Total: -54.00 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: 0.17 Total: -21.01 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.61 -9.58 -46.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361571028.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.664 kcal (2) G-P(sol) polarization free energy of solvation -36.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds