Wall clock time and date at job start Wed Apr 1 2020 06:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50710 * 110.62684 * 2 1 4 4 N 1.34777 * 119.99645 * 303.10337 * 3 2 1 5 5 O 1.21276 * 119.99751 * 123.10480 * 3 2 1 6 6 C 1.55139 * 110.70738 * 236.70340 * 2 1 3 7 7 C 1.54897 * 101.65256 * 205.96011 * 6 2 1 8 8 N 1.47846 * 104.79654 * 37.07175 * 7 6 2 9 9 C 1.46900 * 111.00181 * 213.63385 * 8 7 6 10 10 C 1.50698 * 109.46880 * 290.84015 * 9 8 7 11 11 O 1.21287 * 120.00262 * 353.73214 * 10 9 8 12 12 N 1.34774 * 120.00002 * 173.72715 * 10 9 8 13 13 C 1.46502 * 120.00149 * 184.49501 * 12 10 9 14 14 C 1.50702 * 109.47414 * 269.99977 * 13 12 10 15 15 H 1.08001 * 119.99490 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00142 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99554 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99932 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46889 * 60.00366 * 18 16 14 20 20 H 1.48506 * 109.46920 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47210 * 300.00018 * 18 16 14 22 22 C 1.39926 * 119.99858 * 4.49579 * 12 10 9 23 23 C 1.38873 * 120.07316 * 247.83658 * 22 12 10 24 24 C 1.38111 * 119.92846 * 179.97438 * 23 22 12 25 25 C 1.38280 * 120.07187 * 0.02562 * 24 23 22 26 26 C 1.38277 * 120.14150 * 359.97438 * 25 24 23 27 27 C 1.38108 * 120.07452 * 359.97438 * 26 25 24 28 28 C 1.47436 * 108.56758 * 335.90347 * 8 7 6 29 29 H 1.08997 * 109.47503 * 296.89387 * 1 2 3 30 30 H 1.09004 * 109.46937 * 56.89636 * 1 2 3 31 31 H 1.09005 * 109.47313 * 176.89309 * 1 2 3 32 32 H 0.96996 * 120.00516 * 0.02562 * 4 3 2 33 33 H 0.97006 * 119.99345 * 180.02562 * 4 3 2 34 34 H 1.08996 * 110.98990 * 324.05714 * 6 2 1 35 35 H 1.09007 * 110.98736 * 87.83451 * 6 2 1 36 36 H 1.08998 * 110.37590 * 278.24085 * 7 6 2 37 37 H 1.09003 * 110.37015 * 155.89949 * 7 6 2 38 38 H 1.09002 * 109.47017 * 170.84510 * 9 8 7 39 39 H 1.08993 * 109.47196 * 50.83865 * 9 8 7 40 40 H 1.08994 * 109.47254 * 30.00766 * 13 12 10 41 41 H 1.09009 * 109.46640 * 150.00033 * 13 12 10 42 42 H 0.97011 * 119.99506 * 179.97438 * 17 16 14 43 43 H 1.08002 * 120.03602 * 0.02562 * 23 22 12 44 44 H 1.08003 * 119.95938 * 180.02562 * 24 23 22 45 45 H 1.08002 * 119.92845 * 179.70443 * 25 24 23 46 46 H 1.08008 * 119.96431 * 179.97438 * 26 25 24 47 47 H 1.07999 * 120.04326 * 180.02562 * 27 26 25 48 48 H 1.08998 * 109.89300 * 120.39279 * 28 8 7 49 49 H 1.09002 * 109.89260 * 241.42402 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0609 1.4105 0.0000 4 7 1.7017 2.2657 -0.9778 5 8 2.8114 1.7759 0.8798 6 6 2.0786 -0.7967 -1.2129 7 6 3.4650 -1.2476 -0.6899 8 7 3.2490 -1.5488 0.7414 9 6 4.4406 -1.2189 1.5346 10 6 5.5502 -2.1814 1.1981 11 8 5.3345 -3.1235 0.4654 12 7 6.7825 -1.9951 1.7112 13 6 7.8844 -2.8720 1.3072 14 6 7.9510 -4.0561 2.2369 15 1 7.2429 -4.1467 3.0474 16 6 8.9157 -5.0238 2.0529 17 7 9.7781 -4.9132 1.0662 18 14 8.9977 -6.4919 3.2049 19 1 7.7186 -7.2437 3.1405 20 1 10.1147 -7.3807 2.7954 21 1 9.2245 -6.0190 4.5941 22 6 7.0094 -0.9643 2.6298 23 6 7.8023 0.1199 2.2773 24 6 8.0239 1.1360 3.1861 25 6 7.4575 1.0742 4.4461 26 6 6.6675 -0.0040 4.8002 27 6 6.4412 -1.0228 3.8957 28 6 2.0756 -0.7884 1.2092 29 1 -0.3634 0.4648 0.9165 30 1 -0.3633 0.5613 -0.8609 31 1 -0.3634 -1.0262 -0.0557 32 1 1.1012 1.9735 -1.6813 33 1 2.0437 3.1734 -0.9779 34 1 1.4460 -1.6563 -1.4338 35 1 2.1806 -0.1545 -2.0879 36 1 4.1930 -0.4442 -0.8029 37 1 3.7984 -2.1402 -1.2194 38 1 4.2031 -1.2948 2.5957 39 1 4.7595 -0.2022 1.3054 40 1 7.7173 -3.2194 0.2877 41 1 8.8234 -2.3203 1.3536 42 1 10.4571 -5.5938 0.9369 43 1 8.2446 0.1689 1.2932 44 1 8.6401 1.9796 2.9123 45 1 7.6362 1.8677 5.1567 46 1 6.2269 -0.0495 5.7853 47 1 5.8238 -1.8645 4.1727 48 1 1.3132 -1.4736 1.5797 49 1 2.3714 -0.0999 2.0008 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361571028.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:05:28 Heat of formation + Delta-G solvation = -59.187459 kcal Electronic energy + Delta-G solvation = -31360.770490 eV Core-core repulsion = 27286.668628 eV Total energy + Delta-G solvation = -4074.101862 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 3.12 seconds Orbital eigenvalues (eV) -41.87328 -41.17859 -39.58244 -38.60563 -36.49845 -35.29439 -34.80259 -33.78241 -31.90175 -31.14988 -30.82772 -29.62208 -28.11990 -26.29178 -24.85565 -24.11834 -23.68828 -23.36406 -22.25497 -20.50807 -20.35338 -18.88029 -18.70442 -18.21291 -17.66323 -17.45192 -17.05306 -16.68376 -16.47479 -16.43281 -15.88048 -15.61317 -15.49942 -15.23505 -14.80107 -14.69102 -14.42622 -14.35446 -14.30130 -13.95435 -13.70473 -13.62580 -13.41128 -13.18733 -13.15354 -12.97335 -12.66077 -12.59949 -12.44922 -12.34435 -12.15456 -12.13271 -11.99225 -11.77185 -11.74985 -10.89584 -10.85719 -10.68244 -10.67815 -10.13161 -9.86128 -9.39668 -9.24038 -8.26034 -6.40820 0.34140 0.47234 1.33152 1.38356 1.45393 1.56382 1.67187 2.04919 2.36925 2.51308 2.83523 2.97451 3.03449 3.32535 3.51148 3.65153 3.82003 4.00939 4.08493 4.10811 4.13243 4.22194 4.26429 4.29037 4.36796 4.56410 4.58388 4.63246 4.70770 4.73647 4.79703 4.92707 4.96329 4.96927 5.03390 5.06270 5.07765 5.11903 5.31244 5.39446 5.50560 5.58628 5.63945 5.73453 5.80972 5.86854 5.92939 5.99173 6.05181 6.41655 6.63900 6.71174 7.21649 7.30795 7.36564 8.81318 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011497 B = 0.003552 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.737508 B = 7881.025980 C = 9339.956335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.100 4.100 3 C 0.524 3.476 4 N -0.832 5.832 5 O -0.586 6.586 6 C -0.099 4.099 7 C 0.040 3.960 8 N -0.521 5.521 9 C 0.062 3.938 10 C 0.506 3.494 11 O -0.556 6.556 12 N -0.567 5.567 13 C 0.270 3.730 14 C -0.542 4.542 15 H 0.050 0.950 16 C 0.010 3.990 17 N -0.927 5.927 18 Si 0.969 3.031 19 H -0.275 1.275 20 H -0.274 1.274 21 H -0.262 1.262 22 C 0.126 3.874 23 C -0.144 4.144 24 C -0.104 4.104 25 C -0.121 4.121 26 C -0.102 4.102 27 C -0.138 4.138 28 C 0.054 3.946 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.418 0.582 33 H 0.408 0.592 34 H 0.107 0.893 35 H 0.101 0.899 36 H 0.022 0.978 37 H 0.066 0.934 38 H 0.106 0.894 39 H 0.058 0.942 40 H 0.003 0.997 41 H 0.019 0.981 42 H 0.269 0.731 43 H 0.111 0.889 44 H 0.153 0.847 45 H 0.161 0.839 46 H 0.155 0.845 47 H 0.113 0.887 48 H 0.102 0.898 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.186 18.580 -0.559 26.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.104 4.104 3 C 0.309 3.691 4 N -0.396 5.396 5 O -0.466 6.466 6 C -0.137 4.137 7 C -0.088 4.088 8 N -0.245 5.245 9 C -0.069 4.069 10 C 0.295 3.705 11 O -0.434 6.434 12 N -0.296 5.296 13 C 0.150 3.850 14 C -0.580 4.580 15 H 0.068 0.932 16 C -0.189 4.189 17 N -0.567 5.567 18 Si 0.793 3.207 19 H -0.201 1.201 20 H -0.198 1.198 21 H -0.187 1.187 22 C 0.035 3.965 23 C -0.164 4.164 24 C -0.122 4.122 25 C -0.139 4.139 26 C -0.121 4.121 27 C -0.158 4.158 28 C -0.073 4.073 29 H 0.083 0.917 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.250 0.750 33 H 0.239 0.761 34 H 0.126 0.874 35 H 0.119 0.881 36 H 0.040 0.960 37 H 0.085 0.915 38 H 0.124 0.876 39 H 0.076 0.924 40 H 0.021 0.979 41 H 0.037 0.963 42 H 0.077 0.923 43 H 0.129 0.871 44 H 0.170 0.830 45 H 0.179 0.821 46 H 0.173 0.827 47 H 0.131 0.869 48 H 0.120 0.880 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.777 17.492 -0.390 25.665 hybrid contribution 0.964 -0.156 -0.252 1.009 sum -17.812 17.335 -0.643 24.864 Atomic orbital electron populations 1.21773 0.88290 1.04687 1.03717 1.22023 0.99877 0.90997 0.97487 1.20644 0.79337 0.88063 0.81026 1.43645 1.51731 1.15688 1.28516 1.90741 1.37850 1.79098 1.38929 1.22851 0.94088 1.00643 0.96104 1.23064 0.98225 0.98931 0.88544 1.63316 1.02792 1.55597 1.02809 1.21956 0.89711 0.95180 1.00089 1.21108 0.83274 0.86080 0.80025 1.90618 1.81874 1.32476 1.38404 1.45832 1.10166 1.30886 1.42688 1.18792 0.83309 0.88230 0.94653 1.21553 1.15143 1.07375 1.13923 0.93221 1.25846 0.94714 1.01050 0.97286 1.70044 1.18493 1.36405 1.31740 0.85450 0.77821 0.78334 0.79130 1.20079 1.19836 1.18707 1.18022 0.99845 0.88447 0.90161 1.21383 1.00194 0.94026 1.00759 1.21338 0.99395 0.97990 0.93526 1.21559 0.96732 0.98910 0.96654 1.21362 0.98166 0.92932 0.99604 1.21412 1.02051 1.00036 0.92314 1.22988 0.92338 0.95302 0.96710 0.91726 0.89305 0.89763 0.75025 0.76087 0.87436 0.88074 0.95962 0.91547 0.87624 0.92365 0.97869 0.96338 0.92256 0.87093 0.82978 0.82121 0.82716 0.86884 0.87977 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.18 8.39 71.98 0.60 -0.58 16 2 C -0.10 -1.74 0.77 -51.74 -0.04 -1.78 16 3 C 0.52 10.62 6.64 87.66 0.58 11.20 16 4 N -0.83 -8.80 8.67 -173.53 -1.50 -10.31 16 5 O -0.59 -17.88 16.28 -3.02 -0.05 -17.93 16 6 C -0.10 -1.79 6.01 31.98 0.19 -1.60 16 7 C 0.04 1.24 5.63 86.77 0.49 1.73 16 8 N -0.52 -17.41 4.82 -890.14 -4.29 -21.70 16 9 C 0.06 2.36 3.73 85.56 0.32 2.67 16 10 C 0.51 24.40 7.26 87.66 0.64 25.04 16 11 O -0.56 -31.16 14.95 -3.05 -0.05 -31.21 16 12 N -0.57 -27.98 2.51 -635.29 -1.59 -29.57 16 13 C 0.27 15.87 5.08 85.63 0.43 16.31 16 14 C -0.54 -33.42 9.39 25.60 0.24 -33.18 16 15 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 16 C 0.01 0.61 5.46 84.65 0.46 1.07 16 17 N -0.93 -58.19 13.29 21.45 0.28 -57.91 16 18 Si 0.97 47.03 29.54 68.60 2.03 49.06 16 19 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 20 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.26 -12.07 7.11 99.48 0.71 -11.37 16 22 C 0.13 5.19 4.36 38.16 0.17 5.36 16 23 C -0.14 -5.22 9.69 22.39 0.22 -5.00 16 24 C -0.10 -2.86 10.04 22.25 0.22 -2.63 16 25 C -0.12 -2.89 10.04 22.29 0.22 -2.66 16 26 C -0.10 -2.75 10.04 22.25 0.22 -2.52 16 27 C -0.14 -4.92 8.53 22.39 0.19 -4.73 16 28 C 0.05 1.35 5.85 86.65 0.51 1.85 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.09 0.34 7.41 -2.38 -0.02 0.33 16 31 H 0.08 0.69 8.11 -2.38 -0.02 0.67 16 32 H 0.42 1.48 8.10 -92.71 -0.75 0.73 16 33 H 0.41 3.78 8.93 -92.70 -0.83 2.96 16 34 H 0.11 1.65 8.02 -2.39 -0.02 1.63 16 35 H 0.10 1.30 7.95 -2.38 -0.02 1.28 16 36 H 0.02 0.75 7.62 -2.39 -0.02 0.73 16 37 H 0.07 2.42 7.53 -2.39 -0.02 2.40 16 38 H 0.11 3.76 7.02 -2.39 -0.02 3.74 16 39 H 0.06 2.26 7.70 -2.39 -0.02 2.24 16 40 H 0.00 0.21 7.49 -2.39 -0.02 0.20 16 41 H 0.02 1.12 7.86 -2.38 -0.02 1.10 16 42 H 0.27 15.73 8.31 -92.70 -0.77 14.96 16 43 H 0.11 4.12 8.06 -2.91 -0.02 4.10 16 44 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 45 H 0.16 2.54 8.06 -2.91 -0.02 2.51 16 46 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 47 H 0.11 4.12 7.98 -2.91 -0.02 4.10 16 48 H 0.10 2.19 7.82 -2.39 -0.02 2.17 16 49 H 0.06 1.70 6.28 -2.39 -0.01 1.68 16 Total: -1.00 -87.44 400.58 -0.11 -87.55 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: -0.60 Total: 21.48 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: 5.67 Total: 10.54 kcal Atomic # 7 Polarization: -112.39 SS G_CDS: -7.10 Total: -119.49 kcal Atomic # 8 Polarization: -49.04 SS G_CDS: -0.09 Total: -49.14 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Total: -87.44 -0.11 -87.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361571028.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.364 kcal (2) G-P(sol) polarization free energy of solvation -87.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.13 seconds