Wall clock time and date at job start Wed Apr 1 2020 03:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.50806 * 2 1 4 4 N 1.46503 * 109.47067 * 299.92332 * 3 2 1 5 5 C 1.34775 * 120.00057 * 179.97438 * 4 3 2 6 6 O 1.21357 * 119.99812 * 359.97438 * 5 4 3 7 7 C 1.49350 * 120.00077 * 180.02562 * 5 4 3 8 8 O 1.21376 * 120.00183 * 0.02562 * 7 5 4 9 9 N 1.34775 * 120.00077 * 180.02562 * 7 5 4 10 10 C 1.39749 * 120.00241 * 174.86052 * 9 7 5 11 11 C 1.39342 * 119.94761 * 326.23218 * 10 9 7 12 12 C 1.38478 * 120.42263 * 180.02562 * 11 10 9 13 13 C 1.37689 * 120.32334 * 359.69752 * 12 11 10 14 14 C 1.40747 * 119.90108 * 0.57773 * 13 12 11 15 15 C 1.41406 * 120.20824 * 179.72393 * 14 13 12 16 16 H 1.07994 * 120.00041 * 331.83042 * 15 14 13 17 17 C 1.39937 * 119.99901 * 151.56297 * 15 14 13 18 18 N 1.30831 * 119.99817 * 349.20795 * 17 15 14 19 19 Si 1.86799 * 120.00152 * 169.21301 * 17 15 14 20 20 H 1.48503 * 109.47293 * 59.99353 * 19 17 15 21 21 H 1.48499 * 109.47275 * 179.97438 * 19 17 15 22 22 H 1.48508 * 109.46833 * 299.99608 * 19 17 15 23 23 C 1.38298 * 119.95685 * 146.25713 * 10 9 7 24 24 C 1.53119 * 109.53670 * 120.10035 * 2 1 3 25 25 C 1.53125 * 109.16098 * 62.30444 * 24 2 1 26 26 C 1.53034 * 109.28070 * 57.65423 * 25 24 2 27 27 N 1.46850 * 109.52336 * 300.82424 * 26 25 24 28 28 C 1.46845 * 111.20048 * 61.74093 * 27 26 25 29 29 H 1.09005 * 109.47542 * 59.99710 * 1 2 3 30 30 H 1.09007 * 109.47706 * 180.02562 * 1 2 3 31 31 H 1.09011 * 109.47062 * 299.99904 * 1 2 3 32 32 H 1.08993 * 109.47378 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.46914 * 59.92422 * 3 2 1 34 34 H 0.97003 * 120.00094 * 359.97438 * 4 3 2 35 35 H 0.96998 * 120.00538 * 354.85618 * 9 7 5 36 36 H 1.08005 * 119.79069 * 0.02562 * 11 10 9 37 37 H 1.07995 * 119.83582 * 179.97438 * 12 11 10 38 38 H 1.08008 * 120.04915 * 180.30283 * 13 12 11 39 39 H 0.97001 * 119.99650 * 180.02562 * 18 17 15 40 40 H 1.07997 * 120.16308 * 0.02562 * 23 10 9 41 41 H 1.09000 * 109.52603 * 182.20745 * 24 2 1 42 42 H 1.09007 * 109.52490 * 302.40111 * 24 2 1 43 43 H 1.09007 * 109.49922 * 297.71484 * 25 24 2 44 44 H 1.09001 * 109.53702 * 177.62036 * 25 24 2 45 45 H 1.08994 * 109.46683 * 180.80785 * 26 25 24 46 46 H 1.09004 * 109.45066 * 60.82917 * 26 25 24 47 47 H 1.00902 * 111.00149 * 297.64121 * 27 26 25 48 48 H 1.08993 * 109.46605 * 178.24378 * 28 27 26 49 49 H 1.09001 * 109.45662 * 58.26688 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0409 1.4421 0.0000 4 7 1.5545 2.1325 -1.1971 5 6 1.8807 3.4227 -1.4103 6 8 2.5770 4.0126 -0.6104 7 6 1.3844 4.1267 -2.6304 8 8 0.6868 3.5370 -3.4298 9 7 1.7111 5.4167 -2.8439 10 6 1.3378 6.0441 -4.0355 11 6 1.2936 5.3143 -5.2217 12 6 0.9255 5.9262 -6.4082 13 6 0.5930 7.2622 -6.4274 14 6 0.6386 8.0137 -5.2382 15 6 0.3040 9.3876 -5.2516 16 1 0.4537 9.9711 -6.1478 17 6 -0.2263 9.9897 -4.1051 18 7 -0.6096 9.2506 -3.0958 19 14 -0.3870 11.8486 -4.0156 20 1 -1.2706 12.3224 -5.1111 21 1 -0.9733 12.2324 -2.7064 22 1 0.9547 12.4689 -4.1586 23 6 1.0132 7.3884 -4.0359 24 6 2.0420 -0.7237 1.2484 25 6 1.5765 -2.1820 1.2104 26 6 2.0860 -2.8418 -0.0730 27 7 1.5682 -2.1133 -1.2382 28 6 2.0409 -0.7231 -1.2484 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3635 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8901 32 1 3.1308 1.4415 0.0005 33 1 1.6767 1.9566 0.8893 34 1 0.9976 1.6611 -1.8363 35 1 2.2052 5.9097 -2.1704 36 1 1.5480 4.2646 -5.2157 37 1 0.8949 5.3516 -7.3221 38 1 0.3019 7.7338 -7.3544 39 1 -0.9775 9.6680 -2.3013 40 1 1.0479 7.9553 -3.1173 41 1 3.1313 -0.6895 1.2683 42 1 1.6450 -0.2378 2.1398 43 1 0.4872 -2.2168 1.2298 44 1 1.9731 -2.7139 2.0753 45 1 1.7442 -3.8761 -0.1100 46 1 3.1757 -2.8186 -0.0851 47 1 0.5605 -2.1529 -1.2709 48 1 1.6663 -0.2186 -2.1390 49 1 3.1308 -0.7102 -1.2550 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000415571437.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:33 Heat of formation + Delta-G solvation = -57.002996 kcal Electronic energy + Delta-G solvation = -29788.553730 eV Core-core repulsion = 25714.546593 eV Total energy + Delta-G solvation = -4074.007137 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.84208 -40.01567 -38.57931 -37.14665 -35.62169 -34.36399 -33.30882 -32.71788 -31.67900 -29.60240 -28.77509 -27.70681 -26.80888 -25.29823 -24.28709 -24.01049 -21.97415 -21.30224 -20.79089 -19.82294 -19.25986 -18.36405 -17.50432 -16.56420 -16.39408 -16.06092 -15.81084 -15.46419 -15.20909 -15.13907 -14.88249 -14.69851 -14.44953 -14.02066 -13.90468 -13.52390 -13.32788 -13.05339 -12.89974 -12.78752 -12.53791 -12.38987 -12.01980 -11.93374 -11.82292 -11.71321 -11.53153 -11.47382 -11.23622 -11.09767 -10.87295 -10.83286 -10.71676 -10.49251 -10.00047 -9.98554 -9.51152 -9.35965 -9.23272 -8.96451 -8.72870 -7.39454 -7.04965 -6.71009 -4.41892 1.54520 2.50236 2.76884 2.89773 3.06802 3.09510 3.20239 3.56162 3.84595 3.89157 3.93467 4.15881 4.25721 4.32820 4.56975 4.63559 4.72094 4.76299 4.78995 5.00780 5.04076 5.20100 5.25251 5.34816 5.43017 5.45628 5.50802 5.56843 5.59806 5.61919 5.72794 5.77724 5.90000 6.10862 6.19208 6.53128 6.58135 6.59434 6.74104 6.92414 6.97386 7.02919 7.09172 7.23580 7.48883 7.55669 7.78685 7.86666 7.98935 8.06710 8.23969 8.39726 8.62073 8.86329 8.89732 10.21572 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.022085 B = 0.002049 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.503668 B =13659.813217 C =14414.783857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C 0.132 3.868 4 N -0.703 5.703 5 C 0.511 3.489 6 O -0.521 6.521 7 C 0.498 3.502 8 O -0.508 6.508 9 N -0.627 5.627 10 C 0.135 3.865 11 C -0.223 4.223 12 C -0.088 4.088 13 C -0.221 4.221 14 C 0.118 3.882 15 C -0.463 4.463 16 H 0.078 0.922 17 C 0.073 3.927 18 N -0.803 5.803 19 Si 0.912 3.088 20 H -0.266 1.266 21 H -0.279 1.279 22 H -0.264 1.264 23 C -0.170 4.170 24 C -0.106 4.106 25 C -0.158 4.158 26 C 0.055 3.945 27 N -0.683 5.683 28 C 0.065 3.935 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.412 0.588 35 H 0.413 0.587 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.280 0.720 40 H 0.128 0.872 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.074 0.926 46 H 0.073 0.927 47 H 0.342 0.658 48 H 0.079 0.921 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.781 -19.292 10.262 22.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.113 4.113 3 C 0.008 3.992 4 N -0.358 5.358 5 C 0.292 3.708 6 O -0.397 6.397 7 C 0.278 3.722 8 O -0.383 6.383 9 N -0.272 5.272 10 C 0.043 3.957 11 C -0.244 4.244 12 C -0.107 4.107 13 C -0.240 4.240 14 C 0.115 3.885 15 C -0.493 4.493 16 H 0.096 0.904 17 C -0.144 4.144 18 N -0.429 5.429 19 Si 0.737 3.263 20 H -0.191 1.191 21 H -0.204 1.204 22 H -0.189 1.189 23 C -0.192 4.192 24 C -0.144 4.144 25 C -0.197 4.197 26 C -0.075 4.075 27 N -0.311 5.311 28 C -0.065 4.065 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.250 0.750 35 H 0.249 0.751 36 H 0.120 0.880 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.091 0.909 40 H 0.145 0.855 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.093 0.907 46 H 0.091 0.909 47 H 0.161 0.839 48 H 0.097 0.903 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.190 -19.534 10.087 22.380 hybrid contribution -0.822 1.273 1.056 1.847 sum 3.368 -18.261 11.143 21.655 Atomic orbital electron populations 1.21968 0.93702 1.02074 1.02892 1.21554 0.96925 0.94596 0.98245 1.21427 0.99462 0.90732 0.87602 1.45775 1.53065 1.11445 1.25495 1.20323 0.80999 0.82706 0.86805 1.90750 1.36750 1.65955 1.46233 1.19923 0.82072 0.83575 0.86590 1.90766 1.35662 1.65840 1.46064 1.43144 1.53904 1.10557 1.19580 1.17644 1.01770 0.92869 0.83382 1.20309 1.13734 0.98898 0.91425 1.20422 0.99624 0.94780 0.95843 1.21109 1.10898 0.93725 0.98314 1.17377 0.87893 0.93009 0.90173 1.19499 1.37465 0.94247 0.98066 0.90352 1.25897 0.93058 1.00550 0.94868 1.69777 1.30447 1.37345 1.05318 0.86308 0.79520 0.82294 0.78205 1.19065 1.20422 1.18888 1.21180 1.05461 0.91939 1.00591 1.21537 1.01056 0.95152 0.96626 1.22285 1.01488 0.96158 0.99815 1.22053 1.00565 0.97414 0.87490 1.60650 1.15691 1.13330 1.41463 1.22136 1.00839 0.87703 0.95861 0.91936 0.92142 0.91917 0.90829 0.90867 0.75035 0.75125 0.87975 0.88804 0.88660 0.90915 0.85470 0.91356 0.91417 0.91577 0.91270 0.90727 0.90857 0.83936 0.90306 0.90451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 7.70 37.15 0.29 -0.74 16 2 C -0.11 -0.77 0.53 -154.43 -0.08 -0.85 16 3 C 0.13 1.22 4.57 -4.04 -0.02 1.20 16 4 N -0.70 -8.18 4.96 -60.77 -0.30 -8.49 16 5 C 0.51 7.89 7.89 -11.63 -0.09 7.80 16 6 O -0.52 -8.92 16.48 5.49 0.09 -8.83 16 7 C 0.50 9.22 7.62 -11.63 -0.09 9.13 16 8 O -0.51 -10.34 14.17 5.47 0.08 -10.26 16 9 N -0.63 -12.51 5.32 -10.34 -0.05 -12.56 16 10 C 0.13 3.16 6.26 -83.82 -0.52 2.63 16 11 C -0.22 -5.18 8.66 -39.08 -0.34 -5.52 16 12 C -0.09 -2.01 10.02 -39.69 -0.40 -2.40 16 13 C -0.22 -5.38 9.79 -38.83 -0.38 -5.76 16 14 C 0.12 3.12 5.56 -106.85 -0.59 2.53 16 15 C -0.46 -12.08 9.06 -37.74 -0.34 -12.42 16 16 H 0.08 1.95 7.87 -52.49 -0.41 1.54 16 17 C 0.07 1.81 5.26 -17.34 -0.09 1.72 16 18 N -0.80 -20.65 10.80 55.55 0.60 -20.05 16 19 Si 0.91 18.60 29.57 -169.99 -5.03 13.57 16 20 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 21 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 22 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 23 C -0.17 -4.34 8.57 -38.67 -0.33 -4.67 16 24 C -0.11 -0.63 4.79 -26.61 -0.13 -0.76 16 25 C -0.16 -0.82 5.73 -26.65 -0.15 -0.98 16 26 C 0.05 0.32 6.55 -3.83 -0.03 0.29 16 27 N -0.68 -4.84 6.80 -113.82 -0.77 -5.61 16 28 C 0.06 0.49 5.15 -3.83 -0.02 0.47 16 29 H 0.06 0.48 6.87 -51.93 -0.36 0.13 16 30 H 0.06 0.35 5.13 -51.93 -0.27 0.09 16 31 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.41 4.50 5.65 -40.82 -0.23 4.27 16 35 H 0.41 7.49 8.29 -40.82 -0.34 7.15 16 36 H 0.10 2.30 6.42 -52.48 -0.34 1.96 16 37 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 38 H 0.10 2.16 8.06 -52.48 -0.42 1.74 16 39 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 40 H 0.13 3.31 6.17 -52.49 -0.32 2.99 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.35 6.58 -51.93 -0.34 0.01 16 44 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.34 2.18 7.15 -39.29 -0.28 1.90 16 48 H 0.08 0.65 6.89 -51.93 -0.36 0.30 16 49 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 387.83 15.07 5.84 5.84 Total: -1.00 -29.45 387.83 -9.89 -39.34 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: -7.03 Total: 15.37 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -3.32 Total: -8.33 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: -0.53 Total: -46.71 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: 0.17 Total: -19.10 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.45 -9.89 -39.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415571437.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.662 kcal (2) G-P(sol) polarization free energy of solvation -29.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds