Wall clock time and date at job start Wed Apr 1 2020 03:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.50806 * 2 1 4 4 N 1.46503 * 109.47067 * 299.92332 * 3 2 1 5 5 C 1.34775 * 120.00057 * 179.97438 * 4 3 2 6 6 O 1.21357 * 119.99812 * 359.97438 * 5 4 3 7 7 C 1.49350 * 120.00077 * 180.02562 * 5 4 3 8 8 O 1.21376 * 120.00183 * 0.02562 * 7 5 4 9 9 N 1.34775 * 120.00077 * 180.02562 * 7 5 4 10 10 C 1.39749 * 120.00241 * 174.86052 * 9 7 5 11 11 C 1.39342 * 119.94761 * 326.23218 * 10 9 7 12 12 C 1.38478 * 120.42263 * 180.02562 * 11 10 9 13 13 C 1.37689 * 120.32334 * 359.69752 * 12 11 10 14 14 C 1.40747 * 119.90108 * 0.57773 * 13 12 11 15 15 C 1.41406 * 120.20824 * 179.72393 * 14 13 12 16 16 H 1.07994 * 120.00041 * 331.83042 * 15 14 13 17 17 C 1.39937 * 119.99901 * 151.56297 * 15 14 13 18 18 N 1.30831 * 119.99817 * 349.20795 * 17 15 14 19 19 Si 1.86799 * 120.00152 * 169.21301 * 17 15 14 20 20 H 1.48503 * 109.47293 * 59.99353 * 19 17 15 21 21 H 1.48499 * 109.47275 * 179.97438 * 19 17 15 22 22 H 1.48508 * 109.46833 * 299.99608 * 19 17 15 23 23 C 1.38298 * 119.95685 * 146.25713 * 10 9 7 24 24 C 1.53119 * 109.53670 * 120.10035 * 2 1 3 25 25 C 1.53125 * 109.16098 * 62.30444 * 24 2 1 26 26 C 1.53034 * 109.28070 * 57.65423 * 25 24 2 27 27 N 1.46850 * 109.52336 * 300.82424 * 26 25 24 28 28 C 1.46845 * 111.20048 * 61.74093 * 27 26 25 29 29 H 1.09005 * 109.47542 * 59.99710 * 1 2 3 30 30 H 1.09007 * 109.47706 * 180.02562 * 1 2 3 31 31 H 1.09011 * 109.47062 * 299.99904 * 1 2 3 32 32 H 1.08993 * 109.47378 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.46914 * 59.92422 * 3 2 1 34 34 H 0.97003 * 120.00094 * 359.97438 * 4 3 2 35 35 H 0.96998 * 120.00538 * 354.85618 * 9 7 5 36 36 H 1.08005 * 119.79069 * 0.02562 * 11 10 9 37 37 H 1.07995 * 119.83582 * 179.97438 * 12 11 10 38 38 H 1.08008 * 120.04915 * 180.30283 * 13 12 11 39 39 H 0.97001 * 119.99650 * 180.02562 * 18 17 15 40 40 H 1.07997 * 120.16308 * 0.02562 * 23 10 9 41 41 H 1.09000 * 109.52603 * 182.20745 * 24 2 1 42 42 H 1.09007 * 109.52490 * 302.40111 * 24 2 1 43 43 H 1.09007 * 109.49922 * 297.71484 * 25 24 2 44 44 H 1.09001 * 109.53702 * 177.62036 * 25 24 2 45 45 H 1.08994 * 109.46683 * 180.80785 * 26 25 24 46 46 H 1.09004 * 109.45066 * 60.82917 * 26 25 24 47 47 H 1.00902 * 111.00149 * 297.64121 * 27 26 25 48 48 H 1.08993 * 109.46605 * 178.24378 * 28 27 26 49 49 H 1.09001 * 109.45662 * 58.26688 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0409 1.4421 0.0000 4 7 1.5545 2.1325 -1.1971 5 6 1.8807 3.4227 -1.4103 6 8 2.5770 4.0126 -0.6104 7 6 1.3844 4.1267 -2.6304 8 8 0.6868 3.5370 -3.4298 9 7 1.7111 5.4167 -2.8439 10 6 1.3378 6.0441 -4.0355 11 6 1.2936 5.3143 -5.2217 12 6 0.9255 5.9262 -6.4082 13 6 0.5930 7.2622 -6.4274 14 6 0.6386 8.0137 -5.2382 15 6 0.3040 9.3876 -5.2516 16 1 0.4537 9.9711 -6.1478 17 6 -0.2263 9.9897 -4.1051 18 7 -0.6096 9.2506 -3.0958 19 14 -0.3870 11.8486 -4.0156 20 1 -1.2706 12.3224 -5.1111 21 1 -0.9733 12.2324 -2.7064 22 1 0.9547 12.4689 -4.1586 23 6 1.0132 7.3884 -4.0359 24 6 2.0420 -0.7237 1.2484 25 6 1.5765 -2.1820 1.2104 26 6 2.0860 -2.8418 -0.0730 27 7 1.5682 -2.1133 -1.2382 28 6 2.0409 -0.7231 -1.2484 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3635 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8901 32 1 3.1308 1.4415 0.0005 33 1 1.6767 1.9566 0.8893 34 1 0.9976 1.6611 -1.8363 35 1 2.2052 5.9097 -2.1704 36 1 1.5480 4.2646 -5.2157 37 1 0.8949 5.3516 -7.3221 38 1 0.3019 7.7338 -7.3544 39 1 -0.9775 9.6680 -2.3013 40 1 1.0479 7.9553 -3.1173 41 1 3.1313 -0.6895 1.2683 42 1 1.6450 -0.2378 2.1398 43 1 0.4872 -2.2168 1.2298 44 1 1.9731 -2.7139 2.0753 45 1 1.7442 -3.8761 -0.1100 46 1 3.1757 -2.8186 -0.0851 47 1 0.5605 -2.1529 -1.2709 48 1 1.6663 -0.2186 -2.1390 49 1 3.1308 -0.7102 -1.2550 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000415571437.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:32 Heat of formation + Delta-G solvation = -76.609706 kcal Electronic energy + Delta-G solvation = -29789.403941 eV Core-core repulsion = 25714.546593 eV Total energy + Delta-G solvation = -4074.857348 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.07259 -40.95316 -39.92988 -38.87179 -36.68281 -35.93617 -35.09588 -33.49142 -32.24438 -31.50089 -30.52644 -28.41909 -27.67067 -27.19011 -25.39687 -24.69982 -23.18063 -22.76434 -22.11814 -21.30906 -20.16852 -19.49794 -19.29416 -17.89324 -17.59365 -17.17493 -16.93377 -16.69580 -16.52126 -16.44196 -16.11899 -15.74407 -15.47072 -15.26212 -14.95867 -14.79279 -14.56736 -14.23250 -14.15901 -13.99499 -13.66504 -13.43641 -13.26187 -13.03011 -12.93733 -12.78281 -12.57442 -12.52984 -12.47705 -12.23454 -12.19121 -12.08731 -11.83678 -11.76581 -11.42140 -11.34728 -11.28045 -10.93239 -10.62190 -10.39741 -9.31823 -9.26246 -8.88340 -8.57317 -6.39109 0.10439 0.95028 1.04539 1.27728 1.40395 1.51626 1.54481 2.08907 2.22468 2.59359 2.76713 3.28546 3.33814 3.58506 3.67264 3.69126 3.72517 4.08202 4.20338 4.26920 4.43198 4.45361 4.52710 4.54994 4.64423 4.67766 4.73412 4.79586 4.83414 4.92322 4.97793 4.99699 5.05279 5.08447 5.09781 5.12576 5.13704 5.21005 5.24813 5.32410 5.40301 5.65245 5.72113 5.92000 5.99204 6.07349 6.07752 6.25499 6.41278 6.47817 6.62467 6.68213 6.87556 6.93713 6.99726 8.36513 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.022085 B = 0.002049 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.503668 B =13659.813217 C =14414.783857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.099 4.099 3 C 0.130 3.870 4 N -0.682 5.682 5 C 0.519 3.481 6 O -0.539 6.539 7 C 0.498 3.502 8 O -0.526 6.526 9 N -0.631 5.631 10 C 0.138 3.862 11 C -0.230 4.230 12 C -0.084 4.084 13 C -0.236 4.236 14 C 0.089 3.911 15 C -0.494 4.494 16 H 0.080 0.920 17 C 0.031 3.969 18 N -0.833 5.833 19 Si 0.986 3.014 20 H -0.260 1.260 21 H -0.271 1.271 22 H -0.259 1.259 23 C -0.193 4.193 24 C -0.104 4.104 25 C -0.152 4.152 26 C 0.054 3.946 27 N -0.691 5.691 28 C 0.067 3.933 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.417 0.583 35 H 0.419 0.581 36 H 0.111 0.889 37 H 0.127 0.873 38 H 0.106 0.894 39 H 0.286 0.714 40 H 0.114 0.886 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.083 0.917 46 H 0.069 0.931 47 H 0.346 0.654 48 H 0.069 0.931 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.725 -20.430 11.020 23.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.101 4.101 3 C 0.007 3.993 4 N -0.336 5.336 5 C 0.299 3.701 6 O -0.416 6.416 7 C 0.280 3.720 8 O -0.402 6.402 9 N -0.276 5.276 10 C 0.046 3.954 11 C -0.251 4.251 12 C -0.103 4.103 13 C -0.256 4.256 14 C 0.086 3.914 15 C -0.524 4.524 16 H 0.099 0.901 17 C -0.182 4.182 18 N -0.460 5.460 19 Si 0.806 3.194 20 H -0.185 1.185 21 H -0.196 1.196 22 H -0.183 1.183 23 C -0.214 4.214 24 C -0.143 4.143 25 C -0.191 4.191 26 C -0.075 4.075 27 N -0.320 5.320 28 C -0.063 4.063 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.256 0.744 35 H 0.257 0.743 36 H 0.129 0.871 37 H 0.145 0.855 38 H 0.124 0.876 39 H 0.096 0.904 40 H 0.132 0.868 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.098 0.902 45 H 0.101 0.899 46 H 0.088 0.912 47 H 0.165 0.835 48 H 0.087 0.913 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.133 -20.732 10.856 23.764 hybrid contribution -0.800 1.451 0.818 1.848 sum 3.334 -19.280 11.674 22.785 Atomic orbital electron populations 1.21968 0.93428 1.02828 1.02349 1.21465 0.96987 0.92925 0.98762 1.21652 0.99666 0.91824 0.86205 1.45769 1.51748 1.09989 1.26062 1.19702 0.81227 0.83655 0.85536 1.90753 1.37893 1.66590 1.46404 1.20482 0.81244 0.82927 0.87350 1.90744 1.36322 1.66092 1.47058 1.43127 1.54234 1.11290 1.18911 1.17709 1.00502 0.92428 0.84769 1.20537 1.13709 0.99304 0.91566 1.20773 0.98066 0.94425 0.97035 1.21310 1.11541 0.94508 0.98236 1.17783 0.88494 0.93847 0.91243 1.19784 1.38847 0.94743 0.99063 0.90146 1.26767 0.92078 1.05355 0.94023 1.69853 1.30801 1.39384 1.05915 0.85196 0.79660 0.76003 0.78492 1.18470 1.19561 1.18321 1.21105 1.07358 0.92919 1.00057 1.21541 1.01150 0.95619 0.95942 1.22233 1.01619 0.95417 0.99825 1.22089 1.00366 0.97771 0.87311 1.60645 1.16088 1.12906 1.42374 1.22059 1.00496 0.88163 0.95605 0.92905 0.90814 0.91989 0.90590 0.90846 0.74396 0.74324 0.87105 0.85541 0.87570 0.90357 0.86827 0.91256 0.91066 0.91300 0.90242 0.89861 0.91226 0.83479 0.91283 0.90946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 7.70 71.98 0.55 -1.24 16 2 C -0.10 -1.22 0.53 -52.13 -0.03 -1.24 16 3 C 0.13 2.22 4.57 86.38 0.39 2.61 16 4 N -0.68 -15.22 4.96 -464.53 -2.30 -17.53 16 5 C 0.52 15.74 7.89 87.24 0.69 16.43 16 6 O -0.54 -18.16 16.48 -3.27 -0.05 -18.21 16 7 C 0.50 18.39 7.62 87.24 0.66 19.05 16 8 O -0.53 -21.22 14.17 -3.33 -0.05 -21.27 16 9 N -0.63 -25.45 5.32 -304.98 -1.62 -27.07 16 10 C 0.14 6.59 6.26 38.16 0.24 6.82 16 11 C -0.23 -10.65 8.66 22.59 0.20 -10.45 16 12 C -0.08 -3.80 10.02 22.20 0.22 -3.57 16 13 C -0.24 -11.61 9.79 22.75 0.22 -11.38 16 14 C 0.09 4.82 5.56 -21.31 -0.12 4.70 16 15 C -0.49 -26.40 9.06 23.46 0.21 -26.19 16 16 H 0.08 4.09 7.87 -2.91 -0.02 4.07 16 17 C 0.03 1.58 5.26 85.25 0.45 2.03 16 18 N -0.83 -43.73 10.80 21.82 0.24 -43.49 16 19 Si 0.99 38.17 29.57 68.60 2.03 40.20 16 20 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 21 H -0.27 -10.03 7.11 99.48 0.71 -9.33 16 22 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 23 C -0.19 -10.13 8.57 22.86 0.20 -9.94 16 24 C -0.10 -1.03 4.79 30.68 0.15 -0.89 16 25 C -0.15 -1.22 5.73 30.65 0.18 -1.04 16 26 C 0.05 0.52 6.55 86.32 0.57 1.09 16 27 N -0.69 -8.68 6.80 -514.00 -3.49 -12.18 16 28 C 0.07 0.92 5.15 86.33 0.44 1.37 16 29 H 0.05 0.75 6.87 -2.38 -0.02 0.73 16 30 H 0.07 0.70 5.13 -2.38 -0.01 0.69 16 31 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.42 8.71 5.65 -92.71 -0.52 8.19 16 35 H 0.42 15.56 8.29 -92.71 -0.77 14.79 16 36 H 0.11 4.89 6.42 -2.91 -0.02 4.88 16 37 H 0.13 4.76 8.06 -2.91 -0.02 4.74 16 38 H 0.11 4.84 8.06 -2.91 -0.02 4.81 16 39 H 0.29 13.71 8.30 -92.71 -0.77 12.94 16 40 H 0.11 6.19 6.17 -2.91 -0.02 6.17 16 41 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 43 H 0.07 0.54 6.58 -2.38 -0.02 0.52 16 44 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 47 H 0.35 3.81 7.15 -89.69 -0.64 3.17 16 48 H 0.07 1.08 6.89 -2.39 -0.02 1.06 16 49 H 0.07 1.07 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -63.45 387.83 -0.96 -64.41 By element: Atomic # 1 Polarization: 47.91 SS G_CDS: -0.92 Total: 46.98 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: 5.22 Total: -11.84 kcal Atomic # 7 Polarization: -93.08 SS G_CDS: -7.18 Total: -100.26 kcal Atomic # 8 Polarization: -39.38 SS G_CDS: -0.10 Total: -39.48 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 2.03 Total: 40.20 kcal Total: -63.45 -0.96 -64.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415571437.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.204 kcal (2) G-P(sol) polarization free energy of solvation -63.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds