Wall clock time and date at job start Wed Apr 1 2020 06:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 110.91627 * 2 1 4 4 C 1.55155 * 111.00402 * 236.10143 * 2 1 3 5 5 C 1.54317 * 102.86323 * 206.23209 * 4 2 1 6 6 H 1.09003 * 109.98211 * 263.05038 * 5 4 2 7 7 C 1.50697 * 109.77739 * 141.88402 * 5 4 2 8 8 C 1.38238 * 119.99839 * 280.52260 * 7 5 4 9 9 C 1.38235 * 119.99841 * 179.78636 * 8 7 5 10 10 C 1.38235 * 119.99641 * 0.46136 * 9 8 7 11 11 C 1.38233 * 120.00403 * 359.77410 * 10 9 8 12 12 C 1.38231 * 119.99784 * 0.02562 * 11 10 9 13 13 N 1.47024 * 107.27414 * 22.51942 * 5 4 2 14 14 C 1.34777 * 125.64632 * 180.96703 * 13 5 4 15 15 O 1.21593 * 119.99953 * 359.72286 * 14 13 5 16 16 N 1.34773 * 120.00097 * 179.97438 * 14 13 5 17 17 C 1.46500 * 120.00431 * 179.72742 * 16 14 13 18 18 C 1.50698 * 109.47467 * 180.02562 * 17 16 14 19 19 O 1.21293 * 120.00137 * 359.97438 * 18 17 16 20 20 N 1.34781 * 120.00012 * 179.97438 * 18 17 16 21 21 C 1.37093 * 120.00027 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00074 * 0.02562 * 21 20 18 23 23 C 1.38948 * 120.00126 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00048 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 120.00059 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46794 * 59.99844 * 25 23 21 27 27 H 1.48496 * 109.47029 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.46801 * 299.99896 * 25 23 21 29 29 C 1.47424 * 108.70429 * 0.70935 * 13 5 4 30 30 H 1.09000 * 109.46964 * 297.55023 * 1 2 3 31 31 H 1.09000 * 109.47083 * 57.54815 * 1 2 3 32 32 H 1.08996 * 109.47247 * 177.54955 * 1 2 3 33 33 H 1.09000 * 109.47171 * 182.44364 * 3 2 1 34 34 H 1.08994 * 109.47634 * 302.45149 * 3 2 1 35 35 H 1.09008 * 109.47159 * 62.45213 * 3 2 1 36 36 H 1.09003 * 110.71852 * 324.78077 * 4 2 1 37 37 H 1.08993 * 110.72387 * 87.88590 * 4 2 1 38 38 H 1.07999 * 119.99759 * 359.97438 * 8 7 5 39 39 H 1.07994 * 120.00011 * 180.25336 * 9 8 7 40 40 H 1.08000 * 119.99721 * 179.78866 * 10 9 8 41 41 H 1.07997 * 119.99838 * 179.97438 * 11 10 9 42 42 H 1.08006 * 119.99683 * 179.97438 * 12 11 10 43 43 H 0.97000 * 120.00112 * 359.73180 * 16 14 13 44 44 H 1.09009 * 109.46712 * 300.00517 * 17 16 14 45 45 H 1.08998 * 109.47207 * 59.99494 * 17 16 14 46 46 H 0.97001 * 119.99473 * 0.02562 * 20 18 17 47 47 H 0.96995 * 120.00047 * 180.02562 * 24 23 21 48 48 H 1.09001 * 110.36740 * 94.93496 * 29 13 5 49 49 H 1.08997 * 110.36591 * 217.14674 * 29 13 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0862 -0.8078 -1.2023 5 6 3.4691 -1.2689 -0.6961 6 1 4.2428 -0.5910 -1.0567 7 6 3.7468 -2.6700 -1.1764 8 6 3.1798 -3.7492 -0.5245 9 6 3.4310 -5.0342 -0.9678 10 6 4.2567 -5.2405 -2.0571 11 6 4.8275 -4.1617 -2.7059 12 6 4.5731 -2.8765 -2.2652 13 7 3.4271 -1.2430 0.7733 14 6 4.4480 -1.5603 1.5940 15 8 5.5161 -1.9089 1.1290 16 7 4.2836 -1.4961 2.9301 17 6 5.3914 -1.8468 3.8223 18 6 4.9505 -1.6931 5.2551 19 8 3.8220 -1.3264 5.5064 20 7 5.8102 -1.9633 6.2574 21 6 5.4093 -1.8231 7.5609 22 1 4.4044 -1.4965 7.7846 23 6 6.2957 -2.1011 8.5941 24 7 7.5182 -2.4990 8.3219 25 14 5.7491 -1.9107 10.3703 26 1 4.5978 -2.8111 10.6331 27 1 6.8719 -2.2667 11.2745 28 1 5.3429 -0.5034 10.6149 29 6 2.0852 -0.8066 1.2003 30 1 -0.3633 0.4753 0.9111 31 1 -0.3633 0.5514 -0.8672 32 1 -0.3633 -1.0267 -0.0439 33 1 3.1650 1.4020 -0.0438 34 1 1.6909 1.9655 -0.8671 35 1 1.7620 1.9383 0.9112 36 1 1.4468 -1.6632 -1.4209 37 1 2.1893 -0.1706 -2.0805 38 1 2.5383 -3.5881 0.3292 39 1 2.9848 -5.8771 -0.4611 40 1 4.4557 -6.2447 -2.4013 41 1 5.4730 -4.3230 -3.5567 42 1 5.0194 -2.0335 -2.7719 43 1 3.4316 -1.2179 3.3011 44 1 5.6893 -2.8799 3.6429 45 1 6.2366 -1.1862 3.6290 46 1 6.7128 -2.2563 6.0563 47 1 8.1368 -2.6934 9.0432 48 1 1.4518 -1.6704 1.4024 49 1 2.1558 -0.1736 2.0848 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425788016.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:05:06 Heat of formation + Delta-G solvation = -42.038408 kcal Electronic energy + Delta-G solvation = -30510.674850 eV Core-core repulsion = 26437.316626 eV Total energy + Delta-G solvation = -4073.358224 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 24.84 seconds Orbital eigenvalues (eV) -40.87527 -39.04089 -38.40710 -37.78443 -34.43313 -33.84283 -33.65371 -31.95402 -31.33331 -30.86767 -28.86556 -27.59879 -27.41794 -26.36897 -24.54310 -23.46552 -22.57910 -21.34486 -19.75714 -19.47857 -19.33822 -18.26404 -17.79659 -17.01213 -16.23962 -15.67769 -15.44217 -15.20451 -14.97011 -14.70295 -14.57182 -14.46054 -14.26572 -13.99848 -13.83574 -13.52463 -13.40269 -13.34230 -13.10383 -12.73449 -12.55552 -12.39652 -12.17353 -12.09964 -11.89792 -11.73173 -11.61683 -11.47541 -11.16445 -11.09537 -10.98401 -10.89533 -10.76386 -10.50080 -10.30252 -9.91669 -9.61303 -8.91463 -8.89563 -8.74259 -8.60594 -8.38238 -8.08422 -6.49859 -3.91944 1.32160 1.41349 2.69762 3.14427 3.22047 3.25873 3.43327 3.75120 3.77085 4.04494 4.10362 4.23044 4.42193 4.48949 4.71072 4.85341 4.91664 4.93369 5.01650 5.05159 5.08148 5.18602 5.18795 5.35337 5.37737 5.42258 5.47300 5.56075 5.56637 5.64571 5.68825 5.79337 5.82739 5.91032 5.94560 5.96425 6.02057 6.03809 6.09108 6.10788 6.26174 6.44001 6.49579 6.60685 6.80610 6.99014 7.22372 7.47038 7.93716 8.23023 8.47013 8.85546 9.05993 9.41218 9.89230 10.67039 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012657 B = 0.002607 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.652186 B =10739.433988 C =12181.836145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.076 4.076 3 C -0.137 4.137 4 C -0.113 4.113 5 C 0.199 3.801 6 H 0.081 0.919 7 C -0.080 4.080 8 C -0.098 4.098 9 C -0.121 4.121 10 C -0.123 4.123 11 C -0.121 4.121 12 C -0.106 4.106 13 N -0.631 5.631 14 C 0.723 3.277 15 O -0.586 6.586 16 N -0.723 5.723 17 C 0.129 3.871 18 C 0.430 3.570 19 O -0.598 6.598 20 N -0.549 5.549 21 C -0.305 4.305 22 H 0.105 0.895 23 C 0.026 3.974 24 N -0.895 5.895 25 Si 0.933 3.067 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.273 1.273 29 C 0.105 3.895 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.406 0.594 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.396 0.604 47 H 0.275 0.725 48 H 0.068 0.932 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.836 1.648 -22.294 24.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.077 4.077 3 C -0.194 4.194 4 C -0.151 4.151 5 C 0.095 3.905 6 H 0.099 0.901 7 C -0.081 4.081 8 C -0.116 4.116 9 C -0.139 4.139 10 C -0.142 4.142 11 C -0.139 4.139 12 C -0.124 4.124 13 N -0.369 5.369 14 C 0.425 3.575 15 O -0.463 6.463 16 N -0.381 5.381 17 C 0.001 3.999 18 C 0.215 3.785 19 O -0.485 6.485 20 N -0.184 5.184 21 C -0.435 4.435 22 H 0.122 0.878 23 C -0.177 4.177 24 N -0.535 5.535 25 Si 0.760 3.240 26 H -0.198 1.198 27 H -0.209 1.209 28 H -0.198 1.198 29 C -0.018 4.018 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.243 0.757 44 H 0.099 0.901 45 H 0.099 0.901 46 H 0.230 0.770 47 H 0.085 0.915 48 H 0.086 0.914 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.520 1.558 -22.205 24.620 hybrid contribution 0.120 -0.102 1.120 1.131 sum -10.400 1.456 -21.085 23.555 Atomic orbital electron populations 1.21727 0.92979 1.02250 1.02364 1.21736 0.95941 0.95532 0.94467 1.21768 1.01398 0.94170 1.02100 1.22844 0.94410 1.00073 0.97784 1.20212 0.97922 0.92997 0.79366 0.90117 1.20040 0.97238 0.95131 0.95715 1.20882 0.99601 0.92176 0.98943 1.21110 0.98926 0.96883 0.96982 1.21100 0.97894 0.98730 0.96441 1.21056 1.00030 0.92681 1.00165 1.20911 0.97650 0.97107 0.96773 1.47498 1.11753 1.72252 1.05386 1.15334 0.82831 0.78541 0.80844 1.90926 1.25299 1.54543 1.75562 1.44792 1.17389 1.72515 1.03409 1.20772 0.89037 1.01647 0.88463 1.19756 0.86899 0.85612 0.86215 1.90483 1.20462 1.53454 1.84098 1.41778 1.13614 1.57577 1.05412 1.19671 0.99852 1.43281 0.80657 0.87761 1.25319 0.95031 0.96640 1.00701 1.69607 1.05031 1.44697 1.34171 0.85880 0.78041 0.79027 0.81054 1.19790 1.20854 1.19787 1.22430 0.83688 0.98111 0.97564 0.91986 0.92083 0.92212 0.92219 0.92276 0.92093 0.90068 0.89738 0.86613 0.86358 0.86424 0.86299 0.86318 0.75662 0.90117 0.90099 0.77020 0.91544 0.91398 0.90351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 8.66 37.16 0.32 -0.54 16 2 C -0.08 -0.60 0.96 -152.36 -0.15 -0.75 16 3 C -0.14 -1.08 8.61 37.16 0.32 -0.76 16 4 C -0.11 -0.90 5.42 -24.90 -0.14 -1.04 16 5 C 0.20 2.25 2.66 -68.11 -0.18 2.07 16 6 H 0.08 0.95 8.03 -51.93 -0.42 0.54 16 7 C -0.08 -0.99 4.08 -104.63 -0.43 -1.42 16 8 C -0.10 -1.24 9.14 -39.58 -0.36 -1.61 16 9 C -0.12 -1.43 10.05 -39.58 -0.40 -1.83 16 10 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 11 C -0.12 -1.31 10.05 -39.59 -0.40 -1.71 16 12 C -0.11 -1.22 9.68 -39.59 -0.38 -1.61 16 13 N -0.63 -8.28 2.30 -170.01 -0.39 -8.67 16 14 C 0.72 12.46 8.12 -86.92 -0.71 11.75 16 15 O -0.59 -12.00 16.18 5.28 0.09 -11.91 16 16 N -0.72 -12.84 5.49 -66.41 -0.36 -13.20 16 17 C 0.13 2.50 6.15 -5.19 -0.03 2.47 16 18 C 0.43 10.02 7.85 -10.98 -0.09 9.94 16 19 O -0.60 -15.42 15.24 5.55 0.08 -15.33 16 20 N -0.55 -13.80 5.29 -10.96 -0.06 -13.85 16 21 C -0.31 -8.35 9.68 -14.94 -0.14 -8.50 16 22 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 23 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 24 N -0.89 -24.10 13.05 55.50 0.72 -23.38 16 25 Si 0.93 20.65 29.55 -169.99 -5.02 15.63 16 26 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 27 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 28 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 29 C 0.11 1.10 5.50 -2.53 -0.01 1.08 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.37 8.11 -51.93 -0.42 -0.05 16 33 H 0.06 0.56 7.80 -51.93 -0.41 0.15 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.49 8.14 -51.92 -0.42 0.06 16 36 H 0.08 0.63 7.69 -51.93 -0.40 0.23 16 37 H 0.08 0.55 8.05 -51.93 -0.42 0.13 16 38 H 0.12 1.47 7.68 -52.49 -0.40 1.07 16 39 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 40 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 42 H 0.12 1.16 8.05 -52.48 -0.42 0.73 16 43 H 0.41 7.05 5.92 -40.82 -0.24 6.81 16 44 H 0.08 1.53 8.14 -51.92 -0.42 1.11 16 45 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 46 H 0.40 9.61 7.90 -40.82 -0.32 9.29 16 47 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 48 H 0.07 0.67 8.04 -51.93 -0.42 0.26 16 49 H 0.08 0.86 7.21 -51.93 -0.37 0.49 16 LS Contribution 403.53 15.07 6.08 6.08 Total: -1.00 -32.49 403.53 -9.68 -42.17 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: -7.56 Total: 16.06 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: -3.26 Total: 6.41 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: -0.09 Total: -59.10 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: 0.17 Total: -27.25 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.49 -9.68 -42.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425788016.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.130 kcal (2) G-P(sol) polarization free energy of solvation -32.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 24.85 seconds