Wall clock time and date at job start Wed Apr 1 2020 06:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 110.91627 * 2 1 4 4 C 1.55155 * 111.00402 * 236.10143 * 2 1 3 5 5 C 1.54317 * 102.86323 * 206.23209 * 4 2 1 6 6 H 1.09003 * 109.98211 * 263.05038 * 5 4 2 7 7 C 1.50697 * 109.77739 * 141.88402 * 5 4 2 8 8 C 1.38238 * 119.99839 * 280.52260 * 7 5 4 9 9 C 1.38235 * 119.99841 * 179.78636 * 8 7 5 10 10 C 1.38235 * 119.99641 * 0.46136 * 9 8 7 11 11 C 1.38233 * 120.00403 * 359.77410 * 10 9 8 12 12 C 1.38231 * 119.99784 * 0.02562 * 11 10 9 13 13 N 1.47024 * 107.27414 * 22.51942 * 5 4 2 14 14 C 1.34777 * 125.64632 * 180.96703 * 13 5 4 15 15 O 1.21593 * 119.99953 * 359.72286 * 14 13 5 16 16 N 1.34773 * 120.00097 * 179.97438 * 14 13 5 17 17 C 1.46500 * 120.00431 * 179.72742 * 16 14 13 18 18 C 1.50698 * 109.47467 * 180.02562 * 17 16 14 19 19 O 1.21293 * 120.00137 * 359.97438 * 18 17 16 20 20 N 1.34781 * 120.00012 * 179.97438 * 18 17 16 21 21 C 1.37093 * 120.00027 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00074 * 0.02562 * 21 20 18 23 23 C 1.38948 * 120.00126 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00048 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 120.00059 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46794 * 59.99844 * 25 23 21 27 27 H 1.48496 * 109.47029 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.46801 * 299.99896 * 25 23 21 29 29 C 1.47424 * 108.70429 * 0.70935 * 13 5 4 30 30 H 1.09000 * 109.46964 * 297.55023 * 1 2 3 31 31 H 1.09000 * 109.47083 * 57.54815 * 1 2 3 32 32 H 1.08996 * 109.47247 * 177.54955 * 1 2 3 33 33 H 1.09000 * 109.47171 * 182.44364 * 3 2 1 34 34 H 1.08994 * 109.47634 * 302.45149 * 3 2 1 35 35 H 1.09008 * 109.47159 * 62.45213 * 3 2 1 36 36 H 1.09003 * 110.71852 * 324.78077 * 4 2 1 37 37 H 1.08993 * 110.72387 * 87.88590 * 4 2 1 38 38 H 1.07999 * 119.99759 * 359.97438 * 8 7 5 39 39 H 1.07994 * 120.00011 * 180.25336 * 9 8 7 40 40 H 1.08000 * 119.99721 * 179.78866 * 10 9 8 41 41 H 1.07997 * 119.99838 * 179.97438 * 11 10 9 42 42 H 1.08006 * 119.99683 * 179.97438 * 12 11 10 43 43 H 0.97000 * 120.00112 * 359.73180 * 16 14 13 44 44 H 1.09009 * 109.46712 * 300.00517 * 17 16 14 45 45 H 1.08998 * 109.47207 * 59.99494 * 17 16 14 46 46 H 0.97001 * 119.99473 * 0.02562 * 20 18 17 47 47 H 0.96995 * 120.00047 * 180.02562 * 24 23 21 48 48 H 1.09001 * 110.36740 * 94.93496 * 29 13 5 49 49 H 1.08997 * 110.36591 * 217.14674 * 29 13 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0862 -0.8078 -1.2023 5 6 3.4691 -1.2689 -0.6961 6 1 4.2428 -0.5910 -1.0567 7 6 3.7468 -2.6700 -1.1764 8 6 3.1798 -3.7492 -0.5245 9 6 3.4310 -5.0342 -0.9678 10 6 4.2567 -5.2405 -2.0571 11 6 4.8275 -4.1617 -2.7059 12 6 4.5731 -2.8765 -2.2652 13 7 3.4271 -1.2430 0.7733 14 6 4.4480 -1.5603 1.5940 15 8 5.5161 -1.9089 1.1290 16 7 4.2836 -1.4961 2.9301 17 6 5.3914 -1.8468 3.8223 18 6 4.9505 -1.6931 5.2551 19 8 3.8220 -1.3264 5.5064 20 7 5.8102 -1.9633 6.2574 21 6 5.4093 -1.8231 7.5609 22 1 4.4044 -1.4965 7.7846 23 6 6.2957 -2.1011 8.5941 24 7 7.5182 -2.4990 8.3219 25 14 5.7491 -1.9107 10.3703 26 1 4.5978 -2.8111 10.6331 27 1 6.8719 -2.2667 11.2745 28 1 5.3429 -0.5034 10.6149 29 6 2.0852 -0.8066 1.2003 30 1 -0.3633 0.4753 0.9111 31 1 -0.3633 0.5514 -0.8672 32 1 -0.3633 -1.0267 -0.0439 33 1 3.1650 1.4020 -0.0438 34 1 1.6909 1.9655 -0.8671 35 1 1.7620 1.9383 0.9112 36 1 1.4468 -1.6632 -1.4209 37 1 2.1893 -0.1706 -2.0805 38 1 2.5383 -3.5881 0.3292 39 1 2.9848 -5.8771 -0.4611 40 1 4.4557 -6.2447 -2.4013 41 1 5.4730 -4.3230 -3.5567 42 1 5.0194 -2.0335 -2.7719 43 1 3.4316 -1.2179 3.3011 44 1 5.6893 -2.8799 3.6429 45 1 6.2366 -1.1862 3.6290 46 1 6.7128 -2.2563 6.0563 47 1 8.1368 -2.6934 9.0432 48 1 1.4518 -1.6704 1.4024 49 1 2.1558 -0.1736 2.0848 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425788016.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:04:49 Heat of formation + Delta-G solvation = -61.221450 kcal Electronic energy + Delta-G solvation = -30511.506689 eV Core-core repulsion = 26437.316626 eV Total energy + Delta-G solvation = -4074.190063 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 19.77 seconds Orbital eigenvalues (eV) -41.91711 -40.49711 -39.69144 -39.00268 -36.26178 -35.32911 -34.73325 -33.41389 -32.89985 -31.73789 -29.80621 -28.89317 -28.19004 -27.30947 -26.34874 -24.42524 -23.46083 -22.39979 -21.40006 -20.78739 -20.21236 -20.02497 -19.24329 -17.92358 -17.53312 -17.18258 -16.85377 -16.58612 -16.40968 -16.04913 -15.74381 -15.58467 -15.35580 -15.18378 -15.07241 -14.79021 -14.38843 -14.25260 -14.00359 -13.85540 -13.75810 -13.55289 -13.40230 -13.33284 -13.11166 -12.90655 -12.76651 -12.47993 -12.42516 -12.27279 -12.14227 -11.93888 -11.80701 -11.59617 -11.57324 -11.46887 -11.28129 -10.57704 -10.31540 -10.10968 -9.79718 -9.73169 -9.43864 -8.51674 -6.02262 0.44095 0.52710 1.37255 1.40851 1.47732 1.54894 1.87870 2.09644 2.27194 2.80210 2.95989 3.15284 3.16242 3.38123 3.61146 3.74476 3.92507 4.00507 4.14574 4.18412 4.25196 4.27268 4.36385 4.39117 4.41478 4.41969 4.54406 4.64035 4.71801 4.74373 4.85114 4.88603 4.99174 5.05515 5.09389 5.13761 5.17783 5.22080 5.27777 5.29370 5.37502 5.39136 5.49907 5.57798 5.62857 5.67882 5.90695 6.02178 6.13890 6.46529 6.90660 7.01964 7.40300 7.50936 7.92402 8.65127 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012657 B = 0.002607 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.652186 B =10739.433988 C =12181.836145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.066 4.066 3 C -0.135 4.135 4 C -0.101 4.101 5 C 0.194 3.806 6 H 0.074 0.926 7 C -0.093 4.093 8 C -0.117 4.117 9 C -0.134 4.134 10 C -0.130 4.130 11 C -0.125 4.125 12 C -0.119 4.119 13 N -0.623 5.623 14 C 0.721 3.279 15 O -0.621 6.621 16 N -0.724 5.724 17 C 0.143 3.857 18 C 0.435 3.565 19 O -0.623 6.623 20 N -0.558 5.558 21 C -0.338 4.338 22 H 0.087 0.913 23 C -0.010 4.010 24 N -0.917 5.917 25 Si 0.998 3.002 26 H -0.269 1.269 27 H -0.271 1.271 28 H -0.269 1.269 29 C 0.098 3.902 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.041 0.959 34 H 0.079 0.921 35 H 0.057 0.943 36 H 0.086 0.914 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.129 0.871 40 H 0.140 0.860 41 H 0.143 0.857 42 H 0.133 0.867 43 H 0.407 0.593 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.398 0.602 47 H 0.280 0.720 48 H 0.074 0.926 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.750 1.856 -23.440 26.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.067 4.067 3 C -0.193 4.193 4 C -0.139 4.139 5 C 0.091 3.909 6 H 0.092 0.908 7 C -0.094 4.094 8 C -0.136 4.136 9 C -0.152 4.152 10 C -0.148 4.148 11 C -0.143 4.143 12 C -0.138 4.138 13 N -0.360 5.360 14 C 0.423 3.577 15 O -0.502 6.502 16 N -0.382 5.382 17 C 0.015 3.985 18 C 0.222 3.778 19 O -0.511 6.511 20 N -0.193 5.193 21 C -0.467 4.467 22 H 0.105 0.895 23 C -0.211 4.211 24 N -0.556 5.556 25 Si 0.820 3.180 26 H -0.194 1.194 27 H -0.196 1.196 28 H -0.194 1.194 29 C -0.025 4.025 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.076 0.924 36 H 0.105 0.895 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.147 0.853 40 H 0.158 0.842 41 H 0.161 0.839 42 H 0.151 0.849 43 H 0.245 0.755 44 H 0.105 0.895 45 H 0.107 0.893 46 H 0.232 0.768 47 H 0.090 0.910 48 H 0.092 0.908 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.465 1.776 -23.388 26.108 hybrid contribution 0.397 -0.177 1.396 1.463 sum -11.068 1.598 -21.992 24.672 Atomic orbital electron populations 1.21710 0.91261 1.02790 1.03157 1.21711 0.97071 0.95003 0.92881 1.21763 1.00245 0.94309 1.02950 1.22834 0.92234 1.00512 0.98309 1.20440 0.99808 0.92697 0.77993 0.90808 1.20195 0.97621 0.95355 0.96188 1.20946 1.00405 0.92966 0.99234 1.21362 0.99343 0.96952 0.97565 1.21426 0.97345 1.00027 0.96021 1.21414 0.99872 0.92338 1.00669 1.21201 0.97582 0.98163 0.96844 1.47503 1.11710 1.70734 1.06038 1.15426 0.83249 0.78397 0.80662 1.90889 1.27027 1.56259 1.76039 1.44721 1.16942 1.72903 1.03677 1.20552 0.89671 1.02257 0.86043 1.20333 0.86189 0.83918 0.87408 1.90458 1.21539 1.54161 1.84926 1.41822 1.13961 1.58223 1.05323 1.19711 0.99698 1.45219 0.82089 0.89493 1.26148 0.94901 0.95640 1.04414 1.69678 1.05726 1.44661 1.35578 0.84923 0.77951 0.79031 0.76056 1.19431 1.19602 1.19400 1.22671 0.82455 0.98682 0.98676 0.91978 0.90443 0.91916 0.94019 0.90224 0.92371 0.89541 0.87524 0.87422 0.85271 0.84187 0.83896 0.84900 0.75476 0.89497 0.89264 0.76757 0.91033 0.90826 0.91142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.36 8.66 71.98 0.62 -0.73 16 2 C -0.07 -0.93 0.96 -50.79 -0.05 -0.98 16 3 C -0.14 -1.93 8.61 71.98 0.62 -1.31 16 4 C -0.10 -1.43 5.42 31.78 0.17 -1.25 16 5 C 0.19 4.28 2.66 44.59 0.12 4.39 16 6 H 0.07 1.72 8.03 -2.39 -0.02 1.70 16 7 C -0.09 -2.25 4.08 -19.87 -0.08 -2.33 16 8 C -0.12 -2.98 9.14 22.27 0.20 -2.78 16 9 C -0.13 -3.11 10.05 22.27 0.22 -2.88 16 10 C -0.13 -2.67 10.05 22.27 0.22 -2.45 16 11 C -0.13 -2.51 10.05 22.27 0.22 -2.29 16 12 C -0.12 -2.64 9.68 22.27 0.22 -2.43 16 13 N -0.62 -16.41 2.30 -810.05 -1.86 -18.28 16 14 C 0.72 25.23 8.12 179.06 1.45 26.69 16 15 O -0.62 -25.87 16.18 -4.01 -0.06 -25.93 16 16 N -0.72 -26.15 5.49 -482.29 -2.65 -28.80 16 17 C 0.14 5.63 6.15 85.63 0.53 6.16 16 18 C 0.43 20.67 7.85 87.66 0.69 21.36 16 19 O -0.62 -32.74 15.24 -3.07 -0.05 -32.78 16 20 N -0.56 -28.63 5.29 -306.98 -1.62 -30.25 16 21 C -0.34 -18.82 9.68 84.04 0.81 -18.00 16 22 H 0.09 5.06 7.16 -2.91 -0.02 5.04 16 23 C -0.01 -0.54 5.50 84.93 0.47 -0.08 16 24 N -0.92 -49.27 13.05 21.66 0.28 -48.99 16 25 Si 1.00 41.98 29.55 68.60 2.03 44.01 16 26 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 27 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 28 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 29 C 0.10 2.00 5.50 86.85 0.48 2.47 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.63 8.11 -2.39 -0.02 0.61 16 33 H 0.04 0.75 7.80 -2.39 -0.02 0.73 16 34 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 36 H 0.09 1.17 7.69 -2.39 -0.02 1.16 16 37 H 0.11 1.08 8.05 -2.39 -0.02 1.06 16 38 H 0.11 2.80 7.68 -2.91 -0.02 2.78 16 39 H 0.13 2.56 8.06 -2.91 -0.02 2.53 16 40 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 41 H 0.14 2.09 8.06 -2.91 -0.02 2.06 16 42 H 0.13 2.43 8.05 -2.91 -0.02 2.41 16 43 H 0.41 14.46 5.92 -92.71 -0.55 13.91 16 44 H 0.09 3.33 8.14 -2.38 -0.02 3.31 16 45 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 46 H 0.40 19.75 7.90 -92.71 -0.73 19.02 16 47 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 48 H 0.07 1.43 8.04 -2.39 -0.02 1.41 16 49 H 0.07 1.56 7.21 -2.39 -0.02 1.54 16 Total: -1.00 -70.16 403.53 2.67 -67.49 By element: Atomic # 1 Polarization: 50.29 SS G_CDS: -0.31 Total: 49.98 kcal Atomic # 6 Polarization: 16.64 SS G_CDS: 6.92 Total: 23.56 kcal Atomic # 7 Polarization: -120.47 SS G_CDS: -5.85 Total: -126.32 kcal Atomic # 8 Polarization: -58.60 SS G_CDS: -0.11 Total: -58.72 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -70.16 2.67 -67.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425788016.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.267 kcal (2) G-P(sol) polarization free energy of solvation -70.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 19.77 seconds