Wall clock time and date at job start Wed Apr 1 2020 06:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53117 * 109.52289 * 2 1 4 4 C 1.53038 * 109.27844 * 177.62240 * 3 2 1 5 5 N 1.46856 * 109.52088 * 300.82172 * 4 3 2 6 6 C 1.39676 * 110.99423 * 185.84301 * 5 4 3 7 7 C 1.38994 * 120.03891 * 0.02562 * 6 5 4 8 8 C 1.38145 * 120.07552 * 179.97438 * 7 6 5 9 9 C 1.38173 * 120.14770 * 359.68937 * 8 7 6 10 10 C 1.38962 * 120.07247 * 0.59000 * 9 8 7 11 11 N 1.39725 * 120.04142 * 179.70006 * 10 9 8 12 12 C 1.34774 * 120.00259 * 144.62160 * 11 10 9 13 13 O 1.21374 * 119.99866 * 4.61770 * 12 11 10 14 14 C 1.49347 * 120.00072 * 184.61485 * 12 11 10 15 15 O 1.21357 * 120.00000 * 0.02562 * 14 12 11 16 16 N 1.34774 * 120.00072 * 180.02562 * 14 12 11 17 17 C 1.46499 * 120.00055 * 180.02562 * 16 14 12 18 18 C 1.50705 * 109.47095 * 179.97438 * 17 16 14 19 19 H 1.07991 * 119.99952 * 359.97438 * 18 17 16 20 20 C 1.37881 * 119.99895 * 180.02562 * 18 17 16 21 21 N 1.31508 * 119.99926 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00029 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47063 * 90.00226 * 22 20 18 24 24 H 1.48494 * 109.47313 * 210.00128 * 22 20 18 25 25 H 1.48503 * 109.47383 * 330.00534 * 22 20 18 26 26 C 1.38750 * 120.03152 * 180.02562 * 6 5 4 27 27 C 1.46840 * 111.19941 * 61.74169 * 5 4 3 28 28 C 1.53039 * 109.52556 * 298.25976 * 27 5 4 29 29 H 1.09001 * 109.47048 * 60.00481 * 1 2 3 30 30 H 1.08997 * 109.46728 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46868 * 299.99506 * 1 2 3 32 32 H 1.09006 * 109.52419 * 239.87216 * 2 1 3 33 33 H 1.09005 * 109.49945 * 57.68180 * 3 2 1 34 34 H 1.08995 * 109.50353 * 297.56393 * 3 2 1 35 35 H 1.09001 * 109.45932 * 180.80874 * 4 3 2 36 36 H 1.08996 * 109.46574 * 60.83675 * 4 3 2 37 37 H 1.07996 * 119.96379 * 359.97438 * 7 6 5 38 38 H 1.07997 * 119.92296 * 179.97438 * 8 7 6 39 39 H 1.08000 * 119.96144 * 180.30050 * 9 8 7 40 40 H 0.97007 * 119.99502 * 324.62489 * 11 10 9 41 41 H 0.96995 * 120.00205 * 359.97438 * 16 14 12 42 42 H 1.09000 * 109.47307 * 300.00351 * 17 16 14 43 43 H 1.09007 * 109.47093 * 60.00328 * 17 16 14 44 44 H 0.96999 * 120.00180 * 179.97438 * 21 20 18 45 45 H 1.07999 * 120.07451 * 0.03259 * 26 6 5 46 46 H 1.09007 * 109.46133 * 58.27528 * 27 5 4 47 47 H 1.08994 * 109.46513 * 178.23940 * 27 5 4 48 48 H 1.09001 * 109.49895 * 299.23454 * 28 27 5 49 49 H 1.08998 * 109.53422 * 179.13962 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0417 1.4431 0.0000 4 6 3.5709 1.4370 0.0599 5 7 4.0116 0.7424 1.2765 6 6 5.3969 0.8327 1.4303 7 6 6.1582 1.5176 0.4905 8 6 7.5283 1.6078 0.6422 9 6 8.1459 1.0234 1.7314 10 6 7.3914 0.3323 2.6717 11 7 8.0174 -0.2637 3.7696 12 6 7.3962 -0.2935 4.9652 13 8 6.2603 0.1215 5.0695 14 6 8.1053 -0.8373 6.1618 15 8 9.2411 -1.2518 6.0577 16 7 7.4839 -0.8676 7.3574 17 6 8.1798 -1.4004 8.5313 18 6 7.2725 -1.3211 9.7320 19 1 6.2774 -0.9140 9.6309 20 6 7.7134 -1.7672 10.9599 21 7 6.9215 -1.6984 12.0076 22 14 9.4350 -2.4706 11.1350 23 1 10.3843 -1.3785 11.4689 24 1 9.4472 -3.4856 12.2188 25 1 9.8423 -3.1067 9.8564 26 6 6.0146 0.2388 2.5216 27 6 3.5722 -0.6587 1.2767 28 6 2.0430 -0.7152 1.2530 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8944 -0.5157 -0.8886 33 1 1.6456 1.9697 0.8684 34 1 1.7153 1.9450 -0.9108 35 1 3.9379 2.4633 0.0746 36 1 3.9667 0.9224 -0.8156 37 1 5.6781 1.9797 -0.3594 38 1 8.1175 2.1401 -0.0898 39 1 9.2167 1.1000 1.8495 40 1 8.8991 -0.6559 3.6711 41 1 6.5763 -0.5359 7.4408 42 1 8.4538 -2.4398 8.3505 43 1 9.0799 -0.8144 8.7172 44 1 7.2315 -2.0126 12.8714 45 1 5.4254 -0.2944 3.2531 46 1 3.9679 -1.1635 0.3953 47 1 3.9400 -1.1546 2.1748 48 1 1.6469 -0.2226 2.1410 49 1 1.7169 -1.7551 1.2377 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427850957.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:44:29 Heat of formation + Delta-G solvation = -40.341327 kcal Electronic energy + Delta-G solvation = -29502.807402 eV Core-core repulsion = 25429.522769 eV Total energy + Delta-G solvation = -4073.284633 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.07834 -40.23704 -38.72067 -37.77108 -35.68969 -34.70093 -33.98531 -32.41080 -31.62943 -30.44256 -29.68742 -28.35607 -27.47961 -25.17000 -23.88121 -23.31169 -22.36485 -21.66308 -21.07524 -20.06502 -19.93309 -18.74536 -17.89064 -16.85702 -16.48806 -16.04289 -15.94564 -15.59796 -15.37137 -15.06098 -15.00204 -14.76171 -14.52267 -14.28295 -14.17485 -13.82438 -13.69309 -13.35870 -13.21983 -12.87886 -12.79238 -12.45933 -12.41457 -12.25765 -12.07241 -11.96108 -11.79808 -11.50805 -11.30092 -11.13087 -11.04562 -10.84568 -10.71688 -10.62535 -10.42757 -10.04341 -9.82446 -9.57293 -9.24758 -8.86970 -8.45683 -8.39317 -7.96298 -6.25895 -4.29801 1.00583 1.25947 1.77559 2.55465 3.22470 3.29633 3.31425 3.35378 3.47160 3.75921 3.98581 4.27704 4.34373 4.38526 4.43582 4.68994 4.83200 4.90090 4.91444 4.93658 5.00498 5.07500 5.08218 5.13459 5.19866 5.26510 5.32984 5.36291 5.39219 5.46776 5.55190 5.56589 5.66446 5.78079 5.82094 5.82635 6.04855 6.08277 6.12482 6.20580 6.26676 6.57793 6.62560 6.79365 6.86205 6.90397 7.08264 7.14081 7.24273 7.71251 8.00309 8.33580 8.45877 8.74361 9.31394 10.85836 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013915 B = 0.002187 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.802513 B =12797.159494 C =14439.238842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C -0.114 4.114 4 C 0.052 3.948 5 N -0.485 5.485 6 C 0.130 3.870 7 C -0.189 4.189 8 C -0.075 4.075 9 C -0.169 4.169 10 C 0.170 3.830 11 N -0.651 5.651 12 C 0.508 3.492 13 O -0.496 6.496 14 C 0.494 3.506 15 O -0.538 6.538 16 N -0.663 5.663 17 C 0.218 3.782 18 C -0.548 4.548 19 H 0.083 0.917 20 C 0.079 3.921 21 N -0.888 5.888 22 Si 0.877 3.123 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.261 1.261 26 C -0.142 4.142 27 C 0.058 3.942 28 C -0.115 4.115 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.044 0.956 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.423 0.577 41 H 0.411 0.589 42 H 0.033 0.967 43 H 0.029 0.971 44 H 0.269 0.731 45 H 0.145 0.855 46 H 0.042 0.958 47 H 0.084 0.916 48 H 0.075 0.925 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.491 4.894 -29.341 30.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.152 4.152 4 C -0.075 4.075 5 N -0.200 5.200 6 C 0.031 3.969 7 C -0.210 4.210 8 C -0.095 4.095 9 C -0.190 4.190 10 C 0.075 3.925 11 N -0.298 5.298 12 C 0.291 3.709 13 O -0.369 6.369 14 C 0.273 3.727 15 O -0.418 6.418 16 N -0.313 5.313 17 C 0.096 3.904 18 C -0.586 4.586 19 H 0.101 0.899 20 C -0.125 4.125 21 N -0.524 5.524 22 Si 0.703 3.297 23 H -0.197 1.197 24 H -0.208 1.208 25 H -0.185 1.185 26 C -0.164 4.164 27 C -0.067 4.067 28 C -0.153 4.153 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.101 0.899 36 H 0.062 0.938 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.261 0.739 41 H 0.247 0.753 42 H 0.051 0.949 43 H 0.046 0.954 44 H 0.079 0.921 45 H 0.162 0.838 46 H 0.060 0.940 47 H 0.103 0.897 48 H 0.094 0.906 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.835 5.036 -28.601 29.834 hybrid contribution 1.243 -0.595 -0.262 1.403 sum -5.592 4.440 -28.863 29.733 Atomic orbital electron populations 1.21805 0.94857 1.01796 1.01888 1.21210 0.95894 0.96083 0.98216 1.21697 0.94086 0.96788 1.02590 1.22278 0.96136 0.99322 0.89764 1.58925 1.09075 1.14889 1.37115 1.18734 0.87588 0.96850 0.93711 1.21259 0.94197 1.05849 0.99736 1.20735 0.94103 0.97826 0.96790 1.20863 1.00130 1.01293 0.96726 1.17561 0.92010 0.95204 0.87710 1.43195 1.22284 1.56992 1.07344 1.20763 0.86626 0.79087 0.84448 1.90770 1.17083 1.44054 1.84973 1.19718 0.86799 0.81628 0.84587 1.90725 1.17754 1.48105 1.85182 1.46119 1.18812 1.58737 1.07596 1.19724 0.93699 0.94583 0.82372 1.21046 1.01931 1.44266 0.91371 0.89890 1.24783 0.97721 0.94681 0.95317 1.69871 1.36377 1.45934 1.00265 0.86822 0.84477 0.79665 0.78739 1.19739 1.20762 1.18502 1.20897 0.93368 1.04107 0.98065 1.22242 0.96179 0.86387 1.01899 1.21708 0.94020 1.00834 0.98704 0.92750 0.92647 0.92416 0.91492 0.90746 0.91198 0.89901 0.93758 0.85624 0.85622 0.85562 0.73883 0.75345 0.94878 0.95351 0.92114 0.83775 0.93960 0.89748 0.90594 0.91024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.21 37.16 0.34 -0.52 16 2 C -0.10 -0.64 2.79 -90.50 -0.25 -0.89 16 3 C -0.11 -0.78 5.38 -26.65 -0.14 -0.92 16 4 C 0.05 0.41 4.15 -3.83 -0.02 0.39 16 5 N -0.49 -5.05 4.70 -171.17 -0.80 -5.85 16 6 C 0.13 1.50 5.64 -83.81 -0.47 1.03 16 7 C -0.19 -1.84 8.82 -39.34 -0.35 -2.19 16 8 C -0.08 -0.69 10.03 -39.64 -0.40 -1.09 16 9 C -0.17 -1.76 9.96 -39.34 -0.39 -2.15 16 10 C 0.17 2.17 6.29 -83.78 -0.53 1.64 16 11 N -0.65 -8.72 5.32 -10.32 -0.05 -8.78 16 12 C 0.51 8.37 7.73 -11.63 -0.09 8.28 16 13 O -0.50 -8.95 13.91 5.48 0.08 -8.87 16 14 C 0.49 9.40 7.89 -11.63 -0.09 9.30 16 15 O -0.54 -11.08 16.48 5.49 0.09 -10.99 16 16 N -0.66 -13.76 5.54 -61.94 -0.34 -14.11 16 17 C 0.22 5.22 4.50 -5.19 -0.02 5.19 16 18 C -0.55 -14.91 9.83 -34.44 -0.34 -15.25 16 19 H 0.08 2.38 7.84 -52.49 -0.41 1.97 16 20 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 21 N -0.89 -26.12 13.96 55.43 0.77 -25.35 16 22 Si 0.88 20.85 27.47 -169.99 -4.67 16.18 16 23 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.26 -6.07 6.54 56.52 0.37 -5.70 16 26 C -0.14 -1.90 7.80 -39.18 -0.31 -2.21 16 27 C 0.06 0.55 5.26 -3.84 -0.02 0.53 16 28 C -0.11 -0.90 5.38 -26.65 -0.14 -1.05 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.63 6.98 -51.93 -0.36 0.27 16 36 H 0.04 0.32 7.73 -51.93 -0.40 -0.08 16 37 H 0.13 0.97 5.80 -52.49 -0.30 0.66 16 38 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 40 H 0.42 4.90 8.30 -40.82 -0.34 4.56 16 41 H 0.41 8.14 7.79 -40.82 -0.32 7.82 16 42 H 0.03 0.82 7.20 -51.93 -0.37 0.44 16 43 H 0.03 0.69 7.57 -51.92 -0.39 0.30 16 44 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.14 2.18 5.31 -52.49 -0.28 1.90 16 46 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.08 0.88 6.70 -51.93 -0.35 0.53 16 48 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 393.16 15.07 5.92 5.92 Total: -1.00 -31.27 393.16 -9.67 -40.94 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -7.35 Total: 8.68 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -3.32 Total: 2.22 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: -0.43 Total: -54.08 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: 0.17 Total: -19.86 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.67 Total: 16.18 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.27 -9.67 -40.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427850957.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.598 kcal (2) G-P(sol) polarization free energy of solvation -31.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds