Wall clock time and date at job start Wed Apr 1 2020 06:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53117 * 109.52289 * 2 1 4 4 C 1.53038 * 109.27844 * 177.62240 * 3 2 1 5 5 N 1.46856 * 109.52088 * 300.82172 * 4 3 2 6 6 C 1.39676 * 110.99423 * 185.84301 * 5 4 3 7 7 C 1.38994 * 120.03891 * 0.02562 * 6 5 4 8 8 C 1.38145 * 120.07552 * 179.97438 * 7 6 5 9 9 C 1.38173 * 120.14770 * 359.68937 * 8 7 6 10 10 C 1.38962 * 120.07247 * 0.59000 * 9 8 7 11 11 N 1.39725 * 120.04142 * 179.70006 * 10 9 8 12 12 C 1.34774 * 120.00259 * 144.62160 * 11 10 9 13 13 O 1.21374 * 119.99866 * 4.61770 * 12 11 10 14 14 C 1.49347 * 120.00072 * 184.61485 * 12 11 10 15 15 O 1.21357 * 120.00000 * 0.02562 * 14 12 11 16 16 N 1.34774 * 120.00072 * 180.02562 * 14 12 11 17 17 C 1.46499 * 120.00055 * 180.02562 * 16 14 12 18 18 C 1.50705 * 109.47095 * 179.97438 * 17 16 14 19 19 H 1.07991 * 119.99952 * 359.97438 * 18 17 16 20 20 C 1.37881 * 119.99895 * 180.02562 * 18 17 16 21 21 N 1.31508 * 119.99926 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00029 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47063 * 90.00226 * 22 20 18 24 24 H 1.48494 * 109.47313 * 210.00128 * 22 20 18 25 25 H 1.48503 * 109.47383 * 330.00534 * 22 20 18 26 26 C 1.38750 * 120.03152 * 180.02562 * 6 5 4 27 27 C 1.46840 * 111.19941 * 61.74169 * 5 4 3 28 28 C 1.53039 * 109.52556 * 298.25976 * 27 5 4 29 29 H 1.09001 * 109.47048 * 60.00481 * 1 2 3 30 30 H 1.08997 * 109.46728 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46868 * 299.99506 * 1 2 3 32 32 H 1.09006 * 109.52419 * 239.87216 * 2 1 3 33 33 H 1.09005 * 109.49945 * 57.68180 * 3 2 1 34 34 H 1.08995 * 109.50353 * 297.56393 * 3 2 1 35 35 H 1.09001 * 109.45932 * 180.80874 * 4 3 2 36 36 H 1.08996 * 109.46574 * 60.83675 * 4 3 2 37 37 H 1.07996 * 119.96379 * 359.97438 * 7 6 5 38 38 H 1.07997 * 119.92296 * 179.97438 * 8 7 6 39 39 H 1.08000 * 119.96144 * 180.30050 * 9 8 7 40 40 H 0.97007 * 119.99502 * 324.62489 * 11 10 9 41 41 H 0.96995 * 120.00205 * 359.97438 * 16 14 12 42 42 H 1.09000 * 109.47307 * 300.00351 * 17 16 14 43 43 H 1.09007 * 109.47093 * 60.00328 * 17 16 14 44 44 H 0.96999 * 120.00180 * 179.97438 * 21 20 18 45 45 H 1.07999 * 120.07451 * 0.03259 * 26 6 5 46 46 H 1.09007 * 109.46133 * 58.27528 * 27 5 4 47 47 H 1.08994 * 109.46513 * 178.23940 * 27 5 4 48 48 H 1.09001 * 109.49895 * 299.23454 * 28 27 5 49 49 H 1.08998 * 109.53422 * 179.13962 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0417 1.4431 0.0000 4 6 3.5709 1.4370 0.0599 5 7 4.0116 0.7424 1.2765 6 6 5.3969 0.8327 1.4303 7 6 6.1582 1.5176 0.4905 8 6 7.5283 1.6078 0.6422 9 6 8.1459 1.0234 1.7314 10 6 7.3914 0.3323 2.6717 11 7 8.0174 -0.2637 3.7696 12 6 7.3962 -0.2935 4.9652 13 8 6.2603 0.1215 5.0695 14 6 8.1053 -0.8373 6.1618 15 8 9.2411 -1.2518 6.0577 16 7 7.4839 -0.8676 7.3574 17 6 8.1798 -1.4004 8.5313 18 6 7.2725 -1.3211 9.7320 19 1 6.2774 -0.9140 9.6309 20 6 7.7134 -1.7672 10.9599 21 7 6.9215 -1.6984 12.0076 22 14 9.4350 -2.4706 11.1350 23 1 10.3843 -1.3785 11.4689 24 1 9.4472 -3.4856 12.2188 25 1 9.8423 -3.1067 9.8564 26 6 6.0146 0.2388 2.5216 27 6 3.5722 -0.6587 1.2767 28 6 2.0430 -0.7152 1.2530 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8944 -0.5157 -0.8886 33 1 1.6456 1.9697 0.8684 34 1 1.7153 1.9450 -0.9108 35 1 3.9379 2.4633 0.0746 36 1 3.9667 0.9224 -0.8156 37 1 5.6781 1.9797 -0.3594 38 1 8.1175 2.1401 -0.0898 39 1 9.2167 1.1000 1.8495 40 1 8.8991 -0.6559 3.6711 41 1 6.5763 -0.5359 7.4408 42 1 8.4538 -2.4398 8.3505 43 1 9.0799 -0.8144 8.7172 44 1 7.2315 -2.0126 12.8714 45 1 5.4254 -0.2944 3.2531 46 1 3.9679 -1.1635 0.3953 47 1 3.9400 -1.1546 2.1748 48 1 1.6469 -0.2226 2.1410 49 1 1.7169 -1.7551 1.2377 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427850957.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:44:28 Heat of formation + Delta-G solvation = -61.645785 kcal Electronic energy + Delta-G solvation = -29503.731233 eV Core-core repulsion = 25429.522769 eV Total energy + Delta-G solvation = -4074.208463 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.21383 -41.22947 -39.98124 -38.82859 -36.82474 -36.14834 -35.02170 -34.42040 -32.33113 -31.21415 -30.66898 -30.15932 -28.14897 -26.53476 -24.84529 -24.02548 -23.77472 -22.74766 -22.05522 -21.42711 -20.62424 -20.13760 -18.93906 -18.60488 -17.77887 -17.25918 -16.98688 -16.90655 -16.53485 -16.38016 -15.90778 -15.82543 -15.49488 -15.31468 -15.16206 -14.96787 -14.71518 -14.57458 -14.42299 -14.10772 -14.05370 -13.62187 -13.48243 -13.17849 -13.07289 -12.92990 -12.70969 -12.64088 -12.52988 -12.40102 -12.15142 -11.92783 -11.74298 -11.71475 -11.46170 -11.29337 -11.18061 -10.94518 -10.77961 -10.52014 -10.21419 -9.38623 -8.75785 -8.40891 -6.50671 -0.07984 0.42296 0.56045 1.22994 1.35808 1.37865 1.49142 2.02533 2.27862 2.52193 2.67546 2.93427 2.93928 3.36237 3.73129 3.79084 3.84547 3.99353 4.16648 4.18754 4.24914 4.28588 4.39578 4.45541 4.52263 4.56348 4.61178 4.63137 4.74168 4.74752 4.81806 4.86330 4.93601 4.97538 5.05997 5.10337 5.16581 5.20750 5.21856 5.23436 5.28036 5.32575 5.34805 5.48398 5.51835 5.76532 5.84060 6.04477 6.08855 6.33510 6.41045 6.52265 6.67304 6.86280 7.15627 8.74100 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013915 B = 0.002187 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.802513 B =12797.159494 C =14439.238842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 C -0.111 4.111 4 C 0.050 3.950 5 N -0.502 5.502 6 C 0.119 3.881 7 C -0.183 4.183 8 C -0.068 4.068 9 C -0.166 4.166 10 C 0.145 3.855 11 N -0.632 5.632 12 C 0.516 3.484 13 O -0.517 6.517 14 C 0.500 3.500 15 O -0.550 6.550 16 N -0.671 5.671 17 C 0.229 3.771 18 C -0.556 4.556 19 H 0.053 0.947 20 C 0.025 3.975 21 N -0.931 5.931 22 Si 0.944 3.056 23 H -0.262 1.262 24 H -0.274 1.274 25 H -0.251 1.251 26 C -0.165 4.165 27 C 0.061 3.939 28 C -0.112 4.112 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.057 0.943 37 H 0.151 0.849 38 H 0.162 0.838 39 H 0.148 0.852 40 H 0.432 0.568 41 H 0.413 0.587 42 H 0.031 0.969 43 H 0.030 0.970 44 H 0.274 0.726 45 H 0.117 0.883 46 H 0.049 0.951 47 H 0.062 0.938 48 H 0.058 0.942 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.052 5.551 -32.583 33.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 C -0.149 4.149 4 C -0.076 4.076 5 N -0.217 5.217 6 C 0.021 3.979 7 C -0.205 4.205 8 C -0.087 4.087 9 C -0.186 4.186 10 C 0.051 3.949 11 N -0.280 5.280 12 C 0.297 3.703 13 O -0.392 6.392 14 C 0.280 3.720 15 O -0.430 6.430 16 N -0.321 5.321 17 C 0.106 3.894 18 C -0.594 4.594 19 H 0.071 0.929 20 C -0.176 4.176 21 N -0.569 5.569 22 Si 0.766 3.234 23 H -0.187 1.187 24 H -0.199 1.199 25 H -0.175 1.175 26 C -0.187 4.187 27 C -0.065 4.065 28 C -0.150 4.150 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.075 0.925 37 H 0.169 0.831 38 H 0.180 0.820 39 H 0.166 0.834 40 H 0.272 0.728 41 H 0.249 0.751 42 H 0.049 0.951 43 H 0.047 0.953 44 H 0.083 0.917 45 H 0.135 0.865 46 H 0.067 0.933 47 H 0.081 0.919 48 H 0.077 0.923 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.391 5.701 -31.901 32.852 hybrid contribution 0.708 -0.742 0.631 1.204 sum -4.684 4.959 -31.270 32.005 Atomic orbital electron populations 1.21782 0.94198 1.02064 1.02069 1.21194 0.96391 0.95909 0.97533 1.21695 0.93376 0.96838 1.02954 1.22387 0.96794 0.99353 0.89050 1.58917 1.08708 1.15371 1.38698 1.18909 0.88323 0.97047 0.93666 1.21604 0.94580 1.04657 0.99629 1.21179 0.94126 0.96751 0.96664 1.21153 1.01131 1.00235 0.96130 1.17775 0.92094 0.96850 0.88158 1.43018 1.22283 1.56148 1.06514 1.20164 0.86218 0.79299 0.84580 1.90781 1.17798 1.45390 1.85229 1.20050 0.86523 0.80699 0.84727 1.90706 1.18327 1.48426 1.85506 1.45971 1.18989 1.59479 1.07680 1.19394 0.93063 0.94586 0.82311 1.21242 1.01339 1.43807 0.92975 0.92895 1.25686 1.02053 0.94979 0.94867 1.69993 1.38641 1.47276 1.01024 0.85764 0.79170 0.79247 0.79172 1.18701 1.19932 1.17511 1.20804 0.93786 1.05408 0.98708 1.22192 0.97042 0.86123 1.01113 1.21696 0.92978 1.01429 0.98928 0.91610 0.92379 0.93173 0.90622 0.92178 0.89114 0.89391 0.92503 0.83123 0.82033 0.83380 0.72818 0.75082 0.95090 0.95263 0.91707 0.86546 0.93270 0.91933 0.92278 0.90227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.21 71.98 0.66 -0.84 16 2 C -0.09 -1.10 2.79 -10.71 -0.03 -1.13 16 3 C -0.11 -1.33 5.38 30.65 0.16 -1.16 16 4 C 0.05 0.70 4.15 86.32 0.36 1.05 16 5 N -0.50 -10.29 4.70 -695.46 -3.27 -13.56 16 6 C 0.12 2.68 5.64 38.20 0.22 2.90 16 7 C -0.18 -3.07 8.82 22.43 0.20 -2.87 16 8 C -0.07 -1.01 10.03 22.23 0.22 -0.79 16 9 C -0.17 -3.03 9.96 22.43 0.22 -2.81 16 10 C 0.15 3.61 6.29 38.20 0.24 3.85 16 11 N -0.63 -16.71 5.32 -304.91 -1.62 -18.33 16 12 C 0.52 17.25 7.73 87.24 0.67 17.92 16 13 O -0.52 -19.43 13.91 -3.32 -0.05 -19.48 16 14 C 0.50 19.11 7.89 87.24 0.69 19.80 16 15 O -0.55 -22.29 16.48 -3.27 -0.05 -22.34 16 16 N -0.67 -28.44 5.54 -468.24 -2.59 -31.03 16 17 C 0.23 11.03 4.50 85.63 0.38 11.42 16 18 C -0.56 -31.02 9.83 25.60 0.25 -30.77 16 19 H 0.05 3.19 7.84 -2.92 -0.02 3.17 16 20 C 0.02 1.39 5.47 84.66 0.46 1.85 16 21 N -0.93 -55.94 13.96 21.45 0.30 -55.64 16 22 Si 0.94 42.83 27.47 68.60 1.88 44.71 16 23 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 24 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 25 H -0.25 -10.95 6.54 99.48 0.65 -10.30 16 26 C -0.16 -4.50 7.80 22.53 0.18 -4.33 16 27 C 0.06 1.16 5.26 86.33 0.45 1.62 16 28 C -0.11 -1.79 5.38 30.65 0.16 -1.62 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.09 1.12 6.98 -2.39 -0.02 1.10 16 36 H 0.06 0.66 7.73 -2.39 -0.02 0.64 16 37 H 0.15 1.73 5.80 -2.91 -0.02 1.71 16 38 H 0.16 1.26 8.06 -2.91 -0.02 1.23 16 39 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 40 H 0.43 9.57 8.30 -92.70 -0.77 8.80 16 41 H 0.41 17.10 7.79 -92.71 -0.72 16.38 16 42 H 0.03 1.52 7.20 -2.39 -0.02 1.50 16 43 H 0.03 1.41 7.57 -2.38 -0.02 1.40 16 44 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 45 H 0.12 3.80 5.31 -2.91 -0.02 3.78 16 46 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 47 H 0.06 1.44 6.70 -2.39 -0.02 1.43 16 48 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 49 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -68.81 393.16 -0.45 -69.26 By element: Atomic # 1 Polarization: 32.87 SS G_CDS: -0.56 Total: 32.30 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: 5.51 Total: 14.10 kcal Atomic # 7 Polarization: -111.38 SS G_CDS: -7.18 Total: -118.56 kcal Atomic # 8 Polarization: -41.71 SS G_CDS: -0.10 Total: -41.81 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 1.88 Total: 44.71 kcal Total: -68.81 -0.45 -69.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427850957.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.617 kcal (2) G-P(sol) polarization free energy of solvation -68.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds