Wall clock time and date at job start Wed Apr 1 2020 06:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00305 * 2 1 4 4 C 1.53002 * 112.85013 * 311.20405 * 3 2 1 5 5 C 1.53785 * 113.60987 * 82.50661 * 3 2 1 6 6 C 1.53781 * 87.07934 * 139.98537 * 5 3 2 7 7 H 1.08999 * 113.69049 * 220.01156 * 6 5 3 8 8 N 1.46500 * 113.61792 * 89.11537 * 6 5 3 9 9 C 1.46501 * 119.99836 * 202.28637 * 8 6 5 10 10 S 1.65595 * 120.00112 * 22.28419 * 8 6 5 11 11 O 1.42104 * 104.27882 * 316.40116 * 10 8 6 12 12 O 1.42098 * 104.27819 * 188.54471 * 10 8 6 13 13 C 1.81399 * 104.44955 * 72.47195 * 10 8 6 14 14 C 1.53003 * 109.47217 * 185.95033 * 13 10 8 15 15 C 1.50701 * 115.54452 * 295.85607 * 14 13 10 16 16 H 1.07997 * 119.99727 * 99.48846 * 15 14 13 17 17 C 1.37879 * 120.00258 * 279.48362 * 15 14 13 18 18 N 1.31515 * 119.99833 * 5.64432 * 17 15 14 19 19 Si 1.86795 * 120.00247 * 185.64170 * 17 15 14 20 20 H 1.48497 * 109.47173 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.46892 * 300.00084 * 19 17 15 22 22 H 1.48503 * 109.47175 * 59.99936 * 19 17 15 23 23 C 1.52994 * 117.52145 * 81.55727 * 14 13 10 24 24 C 1.52997 * 117.50230 * 150.19039 * 14 13 10 25 25 C 1.53776 * 113.61759 * 180.02562 * 3 2 1 26 26 C 1.53001 * 113.61431 * 105.46934 * 25 3 2 27 27 C 1.53008 * 113.68976 * 334.58042 * 25 3 2 28 28 H 1.09005 * 109.46894 * 299.99785 * 1 2 3 29 29 H 1.08996 * 109.47290 * 59.99330 * 1 2 3 30 30 H 1.09001 * 109.47021 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46845 * 309.78358 * 4 3 2 32 32 H 1.08997 * 109.47276 * 69.78559 * 4 3 2 33 33 H 1.08997 * 109.46802 * 189.78500 * 4 3 2 34 34 H 1.08996 * 113.61689 * 25.43041 * 5 3 2 35 35 H 1.09000 * 113.60884 * 254.52665 * 5 3 2 36 36 H 1.09001 * 109.47190 * 263.52002 * 9 8 6 37 37 H 1.09000 * 109.47146 * 23.51998 * 9 8 6 38 38 H 1.09002 * 109.46856 * 143.52017 * 9 8 6 39 39 H 1.09002 * 109.47442 * 65.94458 * 13 10 8 40 40 H 1.09000 * 109.46937 * 305.94656 * 13 10 8 41 41 H 0.97007 * 120.00049 * 354.98056 * 18 17 15 42 42 H 1.08995 * 117.49842 * 214.97040 * 23 14 13 43 43 H 1.09001 * 117.49979 * 359.97438 * 23 14 13 44 44 H 1.09003 * 117.49426 * 359.97263 * 24 14 13 45 45 H 1.08996 * 117.50437 * 144.99021 * 24 14 13 46 46 H 1.08998 * 109.46887 * 170.79396 * 26 25 3 47 47 H 1.08997 * 109.47456 * 290.79496 * 26 25 3 48 48 H 1.09000 * 109.46667 * 50.79711 * 26 25 3 49 49 H 1.09003 * 109.46976 * 322.46518 * 27 25 3 50 50 H 1.09009 * 109.46711 * 82.46363 * 27 25 3 51 51 H 1.09000 * 109.47314 * 202.46210 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.4035 2.2260 -1.0608 5 6 2.0930 1.9428 1.3971 6 6 3.4777 2.4717 0.9876 7 1 4.2200 2.4181 1.7840 8 7 3.4360 3.7831 0.3360 9 6 4.5387 4.2056 -0.5311 10 16 2.1425 4.7879 0.5796 11 8 1.0113 3.9335 0.4801 12 8 2.3432 5.8481 -0.3450 13 6 2.3443 5.3811 2.2819 14 6 1.1221 6.2103 2.6814 15 6 0.9147 7.4811 1.8983 16 1 0.2010 7.5056 1.0881 17 6 1.6360 8.6123 2.2161 18 7 2.5828 8.5540 3.1270 19 14 1.2686 10.2276 1.3529 20 1 2.1765 11.2828 1.8699 21 1 1.4788 10.0668 -0.1084 22 1 -0.1412 10.6169 1.6103 23 6 -0.1249 5.4540 3.1438 24 6 0.7264 6.2188 4.1593 25 6 3.5480 1.2951 -0.0006 26 6 4.1629 1.6651 -1.3519 27 6 4.1545 0.0254 0.6003 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.4021 1.7177 -2.0250 32 1 0.3805 2.4778 -0.7812 33 1 1.9958 3.1383 -1.1318 34 1 2.1257 1.2151 2.2078 35 1 1.3567 2.7294 1.5623 36 1 5.2314 4.8256 0.0381 37 1 5.0624 3.3268 -0.9071 38 1 4.1426 4.7789 -1.3693 39 1 3.2399 5.9990 2.3476 40 1 2.4408 4.5289 2.9546 41 1 2.7252 7.7350 3.6269 42 1 -1.0952 5.8755 2.8816 43 1 -0.0749 4.3653 3.1631 44 1 1.3367 5.6332 4.8470 45 1 0.3162 7.1434 4.5653 46 1 5.2388 1.7967 -1.2377 47 1 3.9685 0.8684 -2.0700 48 1 3.7193 2.5939 -1.7107 49 1 3.5524 -0.2982 1.4494 50 1 4.1714 -0.7614 -0.1540 51 1 5.1717 0.2311 0.9336 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451264239.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:03:16 Heat of formation + Delta-G solvation = -21.218524 kcal Electronic energy + Delta-G solvation = -32381.214797 eV Core-core repulsion = 28411.910592 eV Total energy + Delta-G solvation = -3969.304206 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.181 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -41.14766 -37.14741 -36.85436 -36.59040 -35.33170 -33.80834 -32.04273 -31.13363 -29.70500 -28.25947 -26.94319 -26.60576 -25.58460 -24.99588 -22.82954 -21.94017 -21.46268 -19.80887 -18.93609 -18.08889 -17.07039 -16.69773 -16.45875 -16.12581 -15.65610 -15.31784 -14.92317 -14.52876 -14.42510 -14.07203 -13.76025 -13.61982 -13.56041 -13.30997 -13.01791 -12.78824 -12.66790 -12.62477 -12.32088 -12.19343 -11.95744 -11.81981 -11.70968 -11.45733 -11.31755 -11.22256 -11.09923 -10.83801 -10.80691 -10.76153 -10.60643 -10.51316 -10.37714 -10.13402 -10.06728 -9.73383 -9.62224 -9.23607 -8.77926 -8.67723 -8.54960 -8.29193 -6.48779 -4.28208 0.88453 3.15828 3.42313 3.46826 3.63343 3.82519 4.27982 4.36873 4.41468 4.46416 4.61118 4.74043 4.89823 4.97908 5.12887 5.17478 5.25467 5.35919 5.44428 5.46709 5.52482 5.54605 5.59241 5.63255 5.66588 5.72576 5.75804 5.80255 5.83347 5.88774 5.93435 5.99318 6.00610 6.06827 6.11409 6.14849 6.19775 6.28113 6.31920 6.41434 6.45549 6.50903 6.65958 6.70715 6.84660 6.97975 7.12040 7.39363 7.99477 8.29261 8.72781 9.50848 10.90615 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017641 B = 0.004322 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.820339 B = 6477.044257 C = 6968.826020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.375 6.375 3 C 0.116 3.884 4 C -0.140 4.140 5 C -0.218 4.218 6 C 0.133 3.867 7 H 0.086 0.914 8 N -0.995 5.995 9 C 0.067 3.933 10 S 2.609 3.391 11 O -0.954 6.954 12 O -0.943 6.943 13 C -0.567 4.567 14 C 0.023 3.977 15 C -0.590 4.590 16 H 0.061 0.939 17 C 0.039 3.961 18 N -0.897 5.897 19 Si 1.061 2.939 20 H -0.281 1.281 21 H -0.281 1.281 22 H -0.285 1.285 23 C -0.190 4.190 24 C -0.167 4.167 25 C -0.075 4.075 26 C -0.146 4.146 27 C -0.116 4.116 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.077 0.923 31 H 0.044 0.956 32 H 0.088 0.912 33 H 0.058 0.942 34 H 0.093 0.907 35 H 0.136 0.864 36 H 0.050 0.950 37 H 0.095 0.905 38 H 0.077 0.923 39 H 0.125 0.875 40 H 0.099 0.901 41 H 0.274 0.726 42 H 0.088 0.912 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.088 0.912 46 H 0.062 0.938 47 H 0.055 0.945 48 H 0.074 0.926 49 H 0.062 0.938 50 H 0.061 0.939 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.027 -15.791 -4.567 16.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.294 6.294 3 C 0.077 3.923 4 C -0.198 4.198 5 C -0.256 4.256 6 C 0.025 3.975 7 H 0.104 0.896 8 N -0.831 5.831 9 C -0.078 4.078 10 S 2.709 3.291 11 O -0.944 6.944 12 O -0.934 6.934 13 C -0.699 4.699 14 C 0.021 3.979 15 C -0.627 4.627 16 H 0.079 0.921 17 C -0.168 4.168 18 N -0.531 5.531 19 Si 0.888 3.112 20 H -0.206 1.206 21 H -0.206 1.206 22 H -0.211 1.211 23 C -0.227 4.227 24 C -0.206 4.206 25 C -0.077 4.077 26 C -0.203 4.203 27 C -0.174 4.174 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.095 0.905 31 H 0.063 0.937 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.112 0.888 35 H 0.153 0.847 36 H 0.068 0.932 37 H 0.113 0.887 38 H 0.096 0.904 39 H 0.144 0.856 40 H 0.118 0.882 41 H 0.085 0.915 42 H 0.107 0.893 43 H 0.095 0.905 44 H 0.088 0.912 45 H 0.107 0.893 46 H 0.081 0.919 47 H 0.074 0.926 48 H 0.092 0.908 49 H 0.081 0.919 50 H 0.080 0.920 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.030 -14.160 -5.381 15.448 hybrid contribution -0.154 -1.436 0.967 1.738 sum 2.876 -15.596 -4.414 16.462 Atomic orbital electron populations 1.22659 0.81641 1.01613 1.00698 1.87859 1.19350 1.27283 1.94872 1.22748 0.92036 0.82872 0.94680 1.22305 1.03274 0.97961 0.96220 1.24945 0.97723 1.04152 0.98790 1.21614 0.98943 0.82061 0.94847 0.89610 1.57463 1.38753 1.26687 1.60226 1.22048 0.89734 1.01507 0.94487 1.05261 0.73368 0.72624 0.77895 1.93471 1.51026 1.63825 1.86055 1.93531 1.84480 1.55419 1.59927 1.30129 1.09489 1.08509 1.21794 1.18546 0.88225 0.95632 0.95504 1.21373 1.27971 0.94244 1.19079 0.92077 1.25817 0.92107 1.02390 0.96480 1.70774 1.27824 1.32035 1.22421 0.83659 0.76158 0.75060 0.76288 1.20573 1.20649 1.21109 1.23013 0.96678 0.96824 1.06173 1.22818 1.03722 1.01203 0.92880 1.22357 0.93844 0.95422 0.96055 1.22166 0.99914 1.02322 0.95904 1.21395 0.99611 0.95332 1.01064 0.93799 0.93834 0.90478 0.93697 0.89322 0.92292 0.88822 0.84668 0.93179 0.88721 0.90428 0.85641 0.88219 0.91458 0.89306 0.90504 0.91211 0.89346 0.91939 0.92621 0.90770 0.91864 0.92027 0.92699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.39 101.05 1.05 1.41 16 2 O -0.37 -5.14 9.76 -35.23 -0.34 -5.48 16 3 C 0.12 1.62 1.18 -89.81 -0.11 1.52 16 4 C -0.14 -2.14 5.21 37.16 0.19 -1.95 16 5 C -0.22 -3.09 6.45 -25.92 -0.17 -3.25 16 6 C 0.13 1.76 4.16 -67.10 -0.28 1.48 16 7 H 0.09 1.00 8.10 -51.93 -0.42 0.58 16 8 N -1.00 -15.13 1.77 -113.72 -0.20 -15.33 16 9 C 0.07 0.89 8.66 59.85 0.52 1.41 16 10 S 2.61 50.99 3.82 -107.50 -0.41 50.58 16 11 O -0.95 -18.35 9.67 -57.54 -0.56 -18.91 16 12 O -0.94 -22.22 16.09 -57.54 -0.93 -23.14 16 13 C -0.57 -11.70 5.90 37.16 0.22 -11.48 16 14 C 0.02 0.55 0.86 -155.66 -0.13 0.42 16 15 C -0.59 -16.10 8.09 -34.44 -0.28 -16.37 16 16 H 0.06 1.72 7.82 -52.49 -0.41 1.30 16 17 C 0.04 1.09 5.42 -17.82 -0.10 0.99 16 18 N -0.90 -25.65 13.61 55.43 0.75 -24.90 16 19 Si 1.06 25.07 29.91 -169.99 -5.08 19.98 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 C -0.19 -3.98 9.96 -26.73 -0.27 -4.25 16 24 C -0.17 -3.66 8.99 -26.73 -0.24 -3.90 16 25 C -0.07 -0.91 1.31 -153.68 -0.20 -1.11 16 26 C -0.15 -1.63 6.72 37.16 0.25 -1.38 16 27 C -0.12 -1.21 8.46 37.16 0.31 -0.90 16 28 H 0.04 0.53 8.12 -51.93 -0.42 0.11 16 29 H 0.04 0.51 6.82 -51.93 -0.35 0.16 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 1.46 6.05 -51.93 -0.31 1.15 16 33 H 0.06 0.95 3.40 -51.61 -0.18 0.78 16 34 H 0.09 1.18 7.66 -51.93 -0.40 0.78 16 35 H 0.14 2.18 4.34 -55.22 -0.24 1.94 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 1.00 3.94 -51.93 -0.20 0.79 16 38 H 0.08 1.11 7.18 -51.93 -0.37 0.74 16 39 H 0.13 2.76 7.60 -51.92 -0.39 2.37 16 40 H 0.10 1.73 8.10 -51.92 -0.42 1.31 16 41 H 0.27 7.65 6.06 -40.82 -0.25 7.41 16 42 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 43 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 44 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 45 H 0.09 2.05 8.14 -51.93 -0.42 1.62 16 46 H 0.06 0.58 6.77 -51.93 -0.35 0.23 16 47 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.07 0.90 4.05 -51.93 -0.21 0.69 16 49 H 0.06 0.67 7.20 -51.93 -0.37 0.30 16 50 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 51 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 382.32 15.07 5.76 5.76 Total: -1.00 -31.63 382.32 -8.56 -40.19 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -8.33 Total: 8.59 kcal Atomic # 6 Polarization: -38.13 SS G_CDS: 0.78 Total: -37.35 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 0.55 Total: -40.22 kcal Atomic # 8 Polarization: -45.71 SS G_CDS: -1.83 Total: -47.53 kcal Atomic # 14 Polarization: 25.07 SS G_CDS: -5.08 Total: 19.98 kcal Atomic # 16 Polarization: 50.99 SS G_CDS: -0.41 Total: 50.58 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.63 -8.56 -40.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451264239.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.970 kcal (2) G-P(sol) polarization free energy of solvation -31.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds