Wall clock time and date at job start Wed Apr 1 2020 06:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00305 * 2 1 4 4 C 1.53002 * 112.85013 * 311.20405 * 3 2 1 5 5 C 1.53785 * 113.60987 * 82.50661 * 3 2 1 6 6 C 1.53781 * 87.07934 * 139.98537 * 5 3 2 7 7 H 1.08999 * 113.69049 * 220.01156 * 6 5 3 8 8 N 1.46500 * 113.61792 * 89.11537 * 6 5 3 9 9 C 1.46501 * 119.99836 * 202.28637 * 8 6 5 10 10 S 1.65595 * 120.00112 * 22.28419 * 8 6 5 11 11 O 1.42104 * 104.27882 * 316.40116 * 10 8 6 12 12 O 1.42098 * 104.27819 * 188.54471 * 10 8 6 13 13 C 1.81399 * 104.44955 * 72.47195 * 10 8 6 14 14 C 1.53003 * 109.47217 * 185.95033 * 13 10 8 15 15 C 1.50701 * 115.54452 * 295.85607 * 14 13 10 16 16 H 1.07997 * 119.99727 * 99.48846 * 15 14 13 17 17 C 1.37879 * 120.00258 * 279.48362 * 15 14 13 18 18 N 1.31515 * 119.99833 * 5.64432 * 17 15 14 19 19 Si 1.86795 * 120.00247 * 185.64170 * 17 15 14 20 20 H 1.48497 * 109.47173 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.46892 * 300.00084 * 19 17 15 22 22 H 1.48503 * 109.47175 * 59.99936 * 19 17 15 23 23 C 1.52994 * 117.52145 * 81.55727 * 14 13 10 24 24 C 1.52997 * 117.50230 * 150.19039 * 14 13 10 25 25 C 1.53776 * 113.61759 * 180.02562 * 3 2 1 26 26 C 1.53001 * 113.61431 * 105.46934 * 25 3 2 27 27 C 1.53008 * 113.68976 * 334.58042 * 25 3 2 28 28 H 1.09005 * 109.46894 * 299.99785 * 1 2 3 29 29 H 1.08996 * 109.47290 * 59.99330 * 1 2 3 30 30 H 1.09001 * 109.47021 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46845 * 309.78358 * 4 3 2 32 32 H 1.08997 * 109.47276 * 69.78559 * 4 3 2 33 33 H 1.08997 * 109.46802 * 189.78500 * 4 3 2 34 34 H 1.08996 * 113.61689 * 25.43041 * 5 3 2 35 35 H 1.09000 * 113.60884 * 254.52665 * 5 3 2 36 36 H 1.09001 * 109.47190 * 263.52002 * 9 8 6 37 37 H 1.09000 * 109.47146 * 23.51998 * 9 8 6 38 38 H 1.09002 * 109.46856 * 143.52017 * 9 8 6 39 39 H 1.09002 * 109.47442 * 65.94458 * 13 10 8 40 40 H 1.09000 * 109.46937 * 305.94656 * 13 10 8 41 41 H 0.97007 * 120.00049 * 354.98056 * 18 17 15 42 42 H 1.08995 * 117.49842 * 214.97040 * 23 14 13 43 43 H 1.09001 * 117.49979 * 359.97438 * 23 14 13 44 44 H 1.09003 * 117.49426 * 359.97263 * 24 14 13 45 45 H 1.08996 * 117.50437 * 144.99021 * 24 14 13 46 46 H 1.08998 * 109.46887 * 170.79396 * 26 25 3 47 47 H 1.08997 * 109.47456 * 290.79496 * 26 25 3 48 48 H 1.09000 * 109.46667 * 50.79711 * 26 25 3 49 49 H 1.09003 * 109.46976 * 322.46518 * 27 25 3 50 50 H 1.09009 * 109.46711 * 82.46363 * 27 25 3 51 51 H 1.09000 * 109.47314 * 202.46210 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.4035 2.2260 -1.0608 5 6 2.0930 1.9428 1.3971 6 6 3.4777 2.4717 0.9876 7 1 4.2200 2.4181 1.7840 8 7 3.4360 3.7831 0.3360 9 6 4.5387 4.2056 -0.5311 10 16 2.1425 4.7879 0.5796 11 8 1.0113 3.9335 0.4801 12 8 2.3432 5.8481 -0.3450 13 6 2.3443 5.3811 2.2819 14 6 1.1221 6.2103 2.6814 15 6 0.9147 7.4811 1.8983 16 1 0.2010 7.5056 1.0881 17 6 1.6360 8.6123 2.2161 18 7 2.5828 8.5540 3.1270 19 14 1.2686 10.2276 1.3529 20 1 2.1765 11.2828 1.8699 21 1 1.4788 10.0668 -0.1084 22 1 -0.1412 10.6169 1.6103 23 6 -0.1249 5.4540 3.1438 24 6 0.7264 6.2188 4.1593 25 6 3.5480 1.2951 -0.0006 26 6 4.1629 1.6651 -1.3519 27 6 4.1545 0.0254 0.6003 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.4021 1.7177 -2.0250 32 1 0.3805 2.4778 -0.7812 33 1 1.9958 3.1383 -1.1318 34 1 2.1257 1.2151 2.2078 35 1 1.3567 2.7294 1.5623 36 1 5.2314 4.8256 0.0381 37 1 5.0624 3.3268 -0.9071 38 1 4.1426 4.7789 -1.3693 39 1 3.2399 5.9990 2.3476 40 1 2.4408 4.5289 2.9546 41 1 2.7252 7.7350 3.6269 42 1 -1.0952 5.8755 2.8816 43 1 -0.0749 4.3653 3.1631 44 1 1.3367 5.6332 4.8470 45 1 0.3162 7.1434 4.5653 46 1 5.2388 1.7967 -1.2377 47 1 3.9685 0.8684 -2.0700 48 1 3.7193 2.5939 -1.7107 49 1 3.5524 -0.2982 1.4494 50 1 4.1714 -0.7614 -0.1540 51 1 5.1717 0.2311 0.9336 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451264239.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:03:12 Heat of formation + Delta-G solvation = -40.609508 kcal Electronic energy + Delta-G solvation = -32382.055654 eV Core-core repulsion = 28411.910592 eV Total energy + Delta-G solvation = -3970.145062 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.181 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.19413 -38.93075 -38.15900 -37.89474 -36.93287 -34.92767 -34.09642 -32.10288 -30.84487 -29.84757 -27.89172 -27.52935 -27.10995 -26.63481 -23.94597 -23.19154 -22.95921 -21.66989 -20.20729 -19.42966 -18.85930 -17.88853 -17.77112 -17.52874 -16.82128 -16.54786 -16.10123 -15.79001 -15.71455 -15.65171 -15.54955 -15.04915 -14.67742 -14.63677 -14.58888 -14.03888 -13.81181 -13.68495 -13.58538 -13.53362 -13.22101 -13.09790 -13.06865 -12.87654 -12.69792 -12.67651 -12.49860 -12.32386 -12.23449 -12.07818 -11.97339 -11.91898 -11.73913 -11.52864 -11.44910 -11.22754 -10.75879 -10.62849 -10.58899 -10.34376 -10.22177 -9.71142 -8.64155 -6.42467 -0.63064 1.49695 1.56636 1.75652 1.81132 2.51626 2.81044 2.89050 3.09274 3.13248 3.24772 3.28390 3.41138 3.60732 3.78261 3.87188 4.08830 4.19369 4.25739 4.32032 4.37602 4.38102 4.49466 4.58029 4.59565 4.60623 4.62548 4.63651 4.74035 4.78864 4.81488 4.86430 4.87903 4.90575 4.94109 4.98180 5.01293 5.11396 5.14341 5.21852 5.22624 5.27290 5.35009 5.39303 5.50617 5.54941 5.74786 5.98835 6.13055 6.36649 6.61041 7.40364 8.76961 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017641 B = 0.004322 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.820339 B = 6477.044257 C = 6968.826020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.378 6.378 3 C 0.108 3.892 4 C -0.140 4.140 5 C -0.224 4.224 6 C 0.127 3.873 7 H 0.112 0.888 8 N -0.986 5.986 9 C 0.059 3.941 10 S 2.621 3.379 11 O -0.955 6.955 12 O -0.993 6.993 13 C -0.567 4.567 14 C -0.010 4.010 15 C -0.601 4.601 16 H 0.040 0.960 17 C -0.004 4.004 18 N -0.918 5.918 19 Si 1.090 2.910 20 H -0.275 1.275 21 H -0.280 1.280 22 H -0.267 1.267 23 C -0.174 4.174 24 C -0.163 4.163 25 C -0.065 4.065 26 C -0.151 4.151 27 C -0.112 4.112 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.101 0.899 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.047 0.953 34 H 0.112 0.888 35 H 0.115 0.885 36 H 0.055 0.945 37 H 0.129 0.871 38 H 0.061 0.939 39 H 0.107 0.893 40 H 0.133 0.867 41 H 0.270 0.730 42 H 0.082 0.918 43 H 0.105 0.895 44 H 0.095 0.905 45 H 0.068 0.932 46 H 0.086 0.914 47 H 0.061 0.939 48 H 0.059 0.941 49 H 0.060 0.940 50 H 0.064 0.936 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.192 -18.217 -4.255 19.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.297 6.297 3 C 0.068 3.932 4 C -0.198 4.198 5 C -0.262 4.262 6 C 0.020 3.980 7 H 0.130 0.870 8 N -0.824 5.824 9 C -0.084 4.084 10 S 2.720 3.280 11 O -0.945 6.945 12 O -0.983 6.983 13 C -0.698 4.698 14 C -0.013 4.013 15 C -0.639 4.639 16 H 0.058 0.942 17 C -0.206 4.206 18 N -0.553 5.553 19 Si 0.913 3.087 20 H -0.200 1.200 21 H -0.206 1.206 22 H -0.192 1.192 23 C -0.211 4.211 24 C -0.202 4.202 25 C -0.067 4.067 26 C -0.207 4.207 27 C -0.170 4.170 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.119 0.881 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.130 0.870 35 H 0.133 0.867 36 H 0.074 0.926 37 H 0.147 0.853 38 H 0.080 0.920 39 H 0.125 0.875 40 H 0.151 0.849 41 H 0.081 0.919 42 H 0.101 0.899 43 H 0.123 0.877 44 H 0.113 0.887 45 H 0.086 0.914 46 H 0.105 0.895 47 H 0.080 0.920 48 H 0.078 0.922 49 H 0.079 0.921 50 H 0.083 0.917 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.170 -16.586 -5.052 17.833 hybrid contribution -0.575 -0.802 0.829 1.289 sum 3.595 -17.388 -4.223 18.251 Atomic orbital electron populations 1.22792 0.80983 1.03088 1.00210 1.87850 1.20112 1.26954 1.94829 1.22796 0.93544 0.82756 0.94064 1.22261 1.02072 0.98082 0.97423 1.24962 0.97653 1.04062 0.99529 1.21893 0.99150 0.81078 0.95847 0.87019 1.57088 1.38211 1.26696 1.60408 1.22285 0.89207 1.03064 0.93869 1.04697 0.74137 0.72256 0.76892 1.93509 1.51966 1.63170 1.85866 1.93463 1.85553 1.57914 1.61357 1.30042 1.07008 1.08938 1.23845 1.18612 0.90690 0.95627 0.96324 1.21584 1.27185 0.96291 1.18792 0.94215 1.26855 0.91929 1.05055 0.96763 1.70846 1.28904 1.32011 1.23551 0.83297 0.77168 0.72712 0.75533 1.19960 1.20595 1.19162 1.23067 0.95423 0.98216 1.04438 1.22787 1.03994 1.00934 0.92503 1.22368 0.92426 0.95593 0.96346 1.22199 1.01228 1.01864 0.95438 1.21397 1.00511 0.94155 1.00941 0.94376 0.94303 0.88050 0.92847 0.91231 0.93432 0.86986 0.86739 0.92639 0.85299 0.92022 0.87489 0.84887 0.91944 0.89922 0.87665 0.88685 0.91379 0.89529 0.91992 0.92200 0.92111 0.91685 0.90648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.39 113.37 1.18 1.75 16 2 O -0.38 -9.54 9.76 -148.98 -1.45 -11.00 16 3 C 0.11 2.81 1.18 -10.27 -0.01 2.80 16 4 C -0.14 -4.23 5.21 71.98 0.37 -3.86 16 5 C -0.22 -5.81 6.45 31.12 0.20 -5.61 16 6 C 0.13 2.99 4.16 45.53 0.19 3.18 16 7 H 0.11 2.12 8.10 -2.39 -0.02 2.10 16 8 N -0.99 -28.61 1.77 -513.69 -0.91 -29.52 16 9 C 0.06 1.51 8.66 127.77 1.11 2.62 16 10 S 2.62 102.85 3.82 -56.49 -0.22 102.63 16 11 O -0.96 -36.85 9.67 -127.65 -1.23 -38.08 16 12 O -0.99 -48.35 16.09 -127.65 -2.05 -50.40 16 13 C -0.57 -23.20 5.90 71.98 0.42 -22.77 16 14 C -0.01 -0.49 0.86 -52.93 -0.05 -0.54 16 15 C -0.60 -33.67 8.09 25.60 0.21 -33.46 16 16 H 0.04 2.32 7.82 -2.91 -0.02 2.30 16 17 C 0.00 -0.21 5.42 84.66 0.46 0.25 16 18 N -0.92 -53.37 13.61 21.45 0.29 -53.08 16 19 Si 1.09 51.24 29.91 68.60 2.05 53.29 16 20 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 21 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 22 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 23 C -0.17 -7.18 9.96 30.59 0.30 -6.88 16 24 C -0.16 -7.05 8.99 30.59 0.27 -6.78 16 25 C -0.07 -1.38 1.31 -51.64 -0.07 -1.45 16 26 C -0.15 -2.88 6.72 71.98 0.48 -2.40 16 27 C -0.11 -1.88 8.46 71.98 0.61 -1.27 16 28 H 0.04 0.88 8.12 -2.38 -0.02 0.86 16 29 H 0.04 0.88 6.82 -2.39 -0.02 0.87 16 30 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.07 2.33 6.05 -2.39 -0.01 2.31 16 33 H 0.05 1.53 3.40 -2.59 -0.01 1.52 16 34 H 0.11 2.47 7.66 -2.39 -0.02 2.45 16 35 H 0.12 3.52 4.34 -54.56 -0.24 3.29 16 36 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.13 2.34 3.94 -2.39 -0.01 2.33 16 38 H 0.06 1.77 7.18 -2.39 -0.02 1.76 16 39 H 0.11 4.77 7.60 -2.39 -0.02 4.75 16 40 H 0.13 4.36 8.10 -2.39 -0.02 4.34 16 41 H 0.27 15.33 6.06 -92.70 -0.56 14.77 16 42 H 0.08 3.46 8.14 -2.39 -0.02 3.44 16 43 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 44 H 0.09 3.57 8.14 -2.39 -0.02 3.55 16 45 H 0.07 3.18 8.14 -2.39 -0.02 3.17 16 46 H 0.09 1.24 6.77 -2.39 -0.02 1.22 16 47 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.06 1.34 4.05 -2.39 -0.01 1.33 16 49 H 0.06 1.06 7.20 -2.39 -0.02 1.04 16 50 H 0.06 1.06 8.14 -2.38 -0.02 1.05 16 51 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -70.04 382.32 3.07 -66.98 By element: Atomic # 1 Polarization: 32.69 SS G_CDS: 0.90 Total: 33.59 kcal Atomic # 6 Polarization: -80.10 SS G_CDS: 5.69 Total: -74.42 kcal Atomic # 7 Polarization: -81.98 SS G_CDS: -0.62 Total: -82.60 kcal Atomic # 8 Polarization: -94.73 SS G_CDS: -4.74 Total: -99.48 kcal Atomic # 14 Polarization: 51.24 SS G_CDS: 2.05 Total: 53.29 kcal Atomic # 16 Polarization: 102.85 SS G_CDS: -0.22 Total: 102.63 kcal Total: -70.04 3.07 -66.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451264239.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.368 kcal (2) G-P(sol) polarization free energy of solvation -70.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds