Wall clock time and date at job start Wed Apr 1 2020 06:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42906 * 113.99818 * 2 1 4 4 C 1.52999 * 112.84889 * 50.33042 * 3 2 1 5 5 C 1.53778 * 113.61527 * 279.13616 * 3 2 1 6 6 C 1.53954 * 87.01824 * 220.04754 * 5 3 2 7 7 H 1.09010 * 113.66509 * 139.93228 * 6 5 3 8 8 N 1.46496 * 113.61537 * 270.79543 * 6 5 3 9 9 C 1.46498 * 119.99765 * 354.96156 * 8 6 5 10 10 S 1.65595 * 120.00015 * 174.95221 * 8 6 5 11 11 O 1.42104 * 104.27876 * 215.34487 * 10 8 6 12 12 O 1.42096 * 104.28040 * 343.20376 * 10 8 6 13 13 C 1.81397 * 104.44886 * 99.27687 * 10 8 6 14 14 C 1.52998 * 109.47383 * 182.27379 * 13 10 8 15 15 C 1.50694 * 115.54997 * 38.73285 * 14 13 10 16 16 H 1.08004 * 120.00558 * 272.25696 * 15 14 13 17 17 C 1.37880 * 120.00106 * 92.26020 * 15 14 13 18 18 N 1.31523 * 119.99759 * 4.17311 * 17 15 14 19 19 Si 1.86800 * 120.00427 * 184.17854 * 17 15 14 20 20 H 1.48503 * 109.47123 * 59.99657 * 19 17 15 21 21 H 1.48500 * 109.47167 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46912 * 299.99923 * 19 17 15 23 23 C 1.53004 * 117.50088 * 253.03055 * 14 13 10 24 24 C 1.53002 * 117.50005 * 184.40738 * 14 13 10 25 25 C 1.53777 * 87.11135 * 25.36628 * 6 5 3 26 26 C 1.53009 * 113.61207 * 220.09149 * 25 6 5 27 27 C 1.52999 * 113.61746 * 89.18675 * 25 6 5 28 28 H 1.08996 * 109.47092 * 299.99857 * 1 2 3 29 29 H 1.08995 * 109.46614 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47051 * 60.00358 * 1 2 3 31 31 H 1.09004 * 109.46896 * 33.09300 * 4 3 2 32 32 H 1.09003 * 109.46832 * 153.08327 * 4 3 2 33 33 H 1.08994 * 109.47626 * 273.08643 * 4 3 2 34 34 H 1.09004 * 113.61357 * 334.56487 * 5 3 2 35 35 H 1.08997 * 113.61424 * 105.47000 * 5 3 2 36 36 H 1.08994 * 109.47832 * 88.93286 * 9 8 6 37 37 H 1.09001 * 109.47074 * 208.92903 * 9 8 6 38 38 H 1.09002 * 109.47486 * 328.92490 * 9 8 6 39 39 H 1.08998 * 109.47326 * 302.27327 * 13 10 8 40 40 H 1.09004 * 109.47296 * 62.26953 * 13 10 8 41 41 H 0.97001 * 119.99927 * 185.00095 * 18 17 15 42 42 H 1.09007 * 117.49481 * 359.97438 * 23 14 13 43 43 H 1.08992 * 117.50251 * 145.01699 * 23 14 13 44 44 H 1.09003 * 117.50036 * 214.97486 * 24 14 13 45 45 H 1.08997 * 117.50041 * 359.97438 * 24 14 13 46 46 H 1.08996 * 109.47275 * 151.96121 * 26 25 6 47 47 H 1.08999 * 109.46460 * 271.96192 * 26 25 6 48 48 H 1.08994 * 109.46760 * 31.95944 * 26 25 6 49 49 H 1.08999 * 109.47314 * 302.99287 * 27 25 6 50 50 H 1.08998 * 109.47164 * 63.00382 * 27 25 6 51 51 H 1.09003 * 109.46632 * 182.99458 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4296 2.2143 1.0853 5 6 2.0564 1.9593 -1.3911 6 6 3.4532 2.4827 -1.0103 7 1 4.1749 2.4373 -1.8260 8 7 3.4295 3.7871 -0.3438 9 6 2.1652 4.5129 -0.1993 10 16 4.8318 4.4409 0.2465 11 8 4.4317 5.1184 1.4298 12 8 5.7344 3.3447 0.2995 13 6 5.3470 5.6289 -1.0237 14 6 6.6769 6.2664 -0.6165 15 6 7.6689 5.3392 0.0372 16 1 7.6436 5.1882 1.1063 17 6 8.6088 4.6838 -0.7295 18 7 8.6933 4.9297 -2.0188 19 14 9.7623 3.4462 0.0627 20 1 8.9683 2.3493 0.6723 21 1 10.6705 2.8849 -0.9694 22 1 10.5645 4.1204 1.1148 23 6 6.6469 7.7197 -0.1390 24 6 7.2312 7.3771 -1.5109 25 6 3.5475 1.2954 -0.0376 26 6 4.1957 1.6506 1.3021 27 6 4.1369 0.0320 -0.6680 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 -1.0276 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 1.1687 1.6164 1.9585 32 1 2.1699 2.9636 1.3661 33 1 0.5369 2.7104 0.7046 34 1 2.0679 1.2410 -2.2110 35 1 1.3161 2.7475 -1.5279 36 1 1.6791 4.2149 0.7296 37 1 2.3619 5.5848 -0.1786 38 1 1.5138 4.2793 -1.0414 39 1 5.4681 5.1129 -1.9762 40 1 4.5881 6.4048 -1.1249 41 1 9.3039 4.4172 -2.5713 42 1 5.6796 8.2218 -0.1155 43 1 7.3446 8.0054 0.6481 44 1 8.3135 7.4375 -1.6262 45 1 6.6487 7.6534 -2.3897 46 1 3.8086 0.9915 2.0791 47 1 5.2762 1.5280 1.2267 48 1 3.9642 2.6853 1.5547 49 1 3.5431 -0.2515 -1.5369 50 1 5.1641 0.2254 -0.9771 51 1 4.1234 -0.7781 0.0613 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451264243.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:04:13 Heat of formation + Delta-G solvation = -52.825758 kcal Electronic energy + Delta-G solvation = -32110.733376 eV Core-core repulsion = 28140.058578 eV Total energy + Delta-G solvation = -3970.674798 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.181 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -42.13787 -38.55555 -37.91343 -37.76929 -36.63957 -35.05052 -34.04459 -31.63032 -30.87769 -29.92464 -28.33514 -27.62110 -27.49395 -26.53537 -23.54977 -22.94728 -22.89601 -21.39174 -20.11483 -18.95957 -18.58040 -18.29835 -17.40504 -17.16441 -16.75089 -16.68227 -16.37727 -16.20431 -15.74183 -15.55072 -15.08826 -14.80275 -14.56730 -14.38890 -14.16133 -13.96983 -13.86362 -13.68848 -13.58813 -13.21599 -13.15149 -13.04171 -12.86036 -12.78606 -12.73449 -12.66819 -12.54487 -12.39959 -12.37501 -12.18674 -11.99553 -11.86811 -11.74204 -11.61833 -11.47386 -11.36042 -10.99386 -10.87181 -10.42257 -10.33065 -10.01300 -9.65258 -8.19882 -6.36663 -0.45579 1.36552 1.40391 1.51513 2.03188 2.42370 2.88560 3.07585 3.12490 3.29866 3.37486 3.43497 3.51533 3.57965 3.82223 3.96100 4.14718 4.21919 4.32982 4.36753 4.48040 4.54185 4.56250 4.58605 4.63192 4.64270 4.65531 4.69050 4.77619 4.78181 4.82855 4.85845 4.90543 4.93987 4.97096 4.98203 5.08575 5.12951 5.18012 5.20734 5.25615 5.30445 5.41410 5.45490 5.58039 5.66328 5.68801 5.81941 6.19481 6.42309 6.69762 7.39671 8.85981 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015827 B = 0.004604 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.730956 B = 6080.239647 C = 7015.440330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.386 6.386 3 C 0.104 3.896 4 C -0.178 4.178 5 C -0.143 4.143 6 C 0.131 3.869 7 H 0.089 0.911 8 N -0.989 5.989 9 C 0.052 3.948 10 S 2.630 3.370 11 O -1.002 7.002 12 O -0.959 6.959 13 C -0.566 4.566 14 C 0.007 3.993 15 C -0.540 4.540 16 H 0.044 0.956 17 C 0.062 3.938 18 N -0.889 5.889 19 Si 0.922 3.078 20 H -0.274 1.274 21 H -0.273 1.273 22 H -0.270 1.270 23 C -0.198 4.198 24 C -0.129 4.129 25 C -0.084 4.084 26 C -0.135 4.135 27 C -0.112 4.112 28 H 0.047 0.953 29 H 0.092 0.908 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.112 0.888 35 H 0.107 0.893 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.108 0.892 39 H 0.119 0.881 40 H 0.128 0.872 41 H 0.265 0.735 42 H 0.099 0.901 43 H 0.078 0.922 44 H 0.068 0.932 45 H 0.083 0.917 46 H 0.057 0.943 47 H 0.061 0.939 48 H 0.029 0.971 49 H 0.075 0.925 50 H 0.047 0.953 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.426 -5.748 -1.620 20.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.305 6.305 3 C 0.064 3.936 4 C -0.234 4.234 5 C -0.182 4.182 6 C 0.024 3.976 7 H 0.107 0.893 8 N -0.827 5.827 9 C -0.091 4.091 10 S 2.728 3.272 11 O -0.992 6.992 12 O -0.949 6.949 13 C -0.697 4.697 14 C 0.005 3.995 15 C -0.577 4.577 16 H 0.063 0.937 17 C -0.142 4.142 18 N -0.525 5.525 19 Si 0.747 3.253 20 H -0.199 1.199 21 H -0.198 1.198 22 H -0.195 1.195 23 C -0.235 4.235 24 C -0.167 4.167 25 C -0.086 4.086 26 C -0.192 4.192 27 C -0.170 4.170 28 H 0.065 0.935 29 H 0.110 0.890 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.109 0.891 34 H 0.130 0.870 35 H 0.125 0.875 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.126 0.874 39 H 0.138 0.862 40 H 0.146 0.854 41 H 0.074 0.926 42 H 0.117 0.883 43 H 0.096 0.904 44 H 0.087 0.913 45 H 0.101 0.899 46 H 0.076 0.924 47 H 0.080 0.920 48 H 0.048 0.952 49 H 0.094 0.906 50 H 0.066 0.934 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.804 -6.125 -0.953 19.799 hybrid contribution 0.988 -0.020 -0.103 0.994 sum -17.815 -6.144 -1.057 18.875 Atomic orbital electron populations 1.22863 0.80284 1.03318 1.00880 1.87951 1.20819 1.26897 1.94880 1.22925 0.92120 0.83480 0.95030 1.22698 1.02336 1.00060 0.98317 1.23939 0.95198 1.01046 0.98004 1.21705 1.00294 0.81045 0.94528 0.89314 1.57395 1.22827 1.27404 1.75055 1.22421 0.86064 0.95756 1.04884 1.04393 0.72298 0.74868 0.75607 1.93449 1.82551 1.77806 1.45400 1.93550 1.64376 1.50595 1.86423 1.29973 1.06108 1.16150 1.17509 1.18401 0.91527 0.87614 1.01988 1.20590 1.16442 1.27505 0.93173 0.93745 1.25302 0.96995 0.96580 0.95280 1.70045 1.37903 1.39136 1.05380 0.86165 0.79196 0.80842 0.79108 1.19950 1.19811 1.19543 1.23268 1.02062 0.99794 0.98394 1.22370 0.99314 1.02992 0.92052 1.22460 0.93789 0.96537 0.95842 1.21944 1.01502 0.99098 0.96698 1.21341 0.99897 0.94868 1.00873 0.93476 0.89003 0.92877 0.91981 0.90446 0.89095 0.86966 0.87479 0.90110 0.91228 0.87407 0.86220 0.85352 0.92581 0.88304 0.90367 0.91320 0.89865 0.92415 0.92023 0.95182 0.90581 0.93409 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.57 113.37 1.20 1.53 16 2 O -0.39 -8.50 9.80 -148.98 -1.46 -9.97 16 3 C 0.10 2.34 1.18 -10.27 -0.01 2.33 16 4 C -0.18 -3.71 5.34 71.98 0.38 -3.33 16 5 C -0.14 -2.73 6.44 31.18 0.20 -2.53 16 6 C 0.13 3.59 3.56 45.58 0.16 3.75 16 7 H 0.09 2.57 8.10 -2.38 -0.02 2.55 16 8 N -0.99 -29.08 1.88 -513.47 -0.97 -30.05 16 9 C 0.05 1.10 8.23 127.77 1.05 2.15 16 10 S 2.63 108.02 3.28 -56.49 -0.19 107.84 16 11 O -1.00 -45.12 17.13 -127.65 -2.19 -47.30 16 12 O -0.96 -46.12 12.07 -127.65 -1.54 -47.66 16 13 C -0.57 -23.09 6.30 71.98 0.45 -22.63 16 14 C 0.01 0.32 1.88 -52.93 -0.10 0.22 16 15 C -0.54 -30.20 6.49 25.60 0.17 -30.04 16 16 H 0.04 2.60 7.82 -2.91 -0.02 2.58 16 17 C 0.06 3.49 5.41 84.65 0.46 3.95 16 18 N -0.89 -49.69 12.04 21.45 0.26 -49.43 16 19 Si 0.92 45.63 29.54 68.60 2.03 47.65 16 20 H -0.27 -14.08 7.11 99.48 0.71 -13.37 16 21 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 22 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 23 C -0.20 -8.55 9.88 30.60 0.30 -8.25 16 24 C -0.13 -5.91 8.91 30.60 0.27 -5.64 16 25 C -0.08 -2.46 1.27 -51.65 -0.07 -2.52 16 26 C -0.13 -4.75 6.40 71.99 0.46 -4.29 16 27 C -0.11 -3.09 8.40 71.98 0.60 -2.48 16 28 H 0.05 0.63 6.88 -2.39 -0.02 0.61 16 29 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.05 0.62 8.06 -2.39 -0.02 0.60 16 31 H 0.06 1.29 7.77 -2.39 -0.02 1.27 16 32 H 0.08 1.99 3.11 -2.39 -0.01 1.98 16 33 H 0.09 1.33 7.40 -2.39 -0.02 1.31 16 34 H 0.11 1.88 7.64 -2.38 -0.02 1.86 16 35 H 0.11 1.49 5.54 -2.39 -0.01 1.47 16 36 H 0.08 1.62 4.41 -2.39 -0.01 1.61 16 37 H 0.07 1.41 7.99 -2.39 -0.02 1.40 16 38 H 0.11 1.48 5.77 -2.39 -0.01 1.47 16 39 H 0.12 4.88 8.14 -2.39 -0.02 4.86 16 40 H 0.13 4.22 7.94 -2.39 -0.02 4.20 16 41 H 0.26 14.16 8.32 -92.71 -0.77 13.39 16 42 H 0.10 3.59 8.08 -2.38 -0.02 3.57 16 43 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 44 H 0.07 3.48 7.74 -2.39 -0.02 3.46 16 45 H 0.08 3.41 8.14 -2.39 -0.02 3.39 16 46 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 47 H 0.06 2.53 6.66 -2.39 -0.02 2.52 16 48 H 0.03 1.10 3.63 -3.40 -0.01 1.09 16 49 H 0.08 1.76 7.26 -2.39 -0.02 1.74 16 50 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 51 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -70.58 384.40 2.40 -68.19 By element: Atomic # 1 Polarization: 27.58 SS G_CDS: 0.92 Total: 28.50 kcal Atomic # 6 Polarization: -73.31 SS G_CDS: 5.54 Total: -67.77 kcal Atomic # 7 Polarization: -78.77 SS G_CDS: -0.71 Total: -79.48 kcal Atomic # 8 Polarization: -99.74 SS G_CDS: -5.19 Total: -104.92 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.65 kcal Atomic # 16 Polarization: 108.02 SS G_CDS: -0.19 Total: 107.84 kcal Total: -70.58 2.40 -68.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451264243.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.360 kcal (2) G-P(sol) polarization free energy of solvation -70.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds