Wall clock time and date at job start Wed Apr 1 2020 05:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.34514 * 125.79314 * 2 1 4 4 C 1.41376 * 106.84522 * 180.29558 * 3 2 1 5 5 C 1.34513 * 106.83955 * 359.57414 * 4 3 2 6 6 C 1.50699 * 125.79212 * 180.11623 * 5 4 3 7 7 N 1.46896 * 109.47584 * 90.34049 * 6 5 4 8 8 C 1.46898 * 111.00735 * 170.00178 * 7 6 5 9 9 C 1.50697 * 109.46990 * 283.97599 * 8 7 6 10 10 O 1.21278 * 120.00053 * 4.43830 * 9 8 7 11 11 N 1.34781 * 119.99815 * 184.44697 * 9 8 7 12 12 C 1.46504 * 119.99634 * 179.97438 * 11 9 8 13 13 C 1.50699 * 109.47200 * 89.99970 * 12 11 9 14 14 H 1.07996 * 119.99715 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00076 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00007 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00093 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47182 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46686 * 120.00311 * 17 15 13 20 20 H 1.48500 * 109.47426 * 240.00315 * 17 15 13 21 21 C 1.46490 * 120.00115 * 359.97438 * 11 9 8 22 22 C 1.52999 * 109.47609 * 90.00109 * 21 11 9 23 23 C 1.47199 * 109.47330 * 179.97438 * 22 21 11 24 24 N 9.77566 * 124.53471 * 333.13485 * 4 1 2 25 25 C 1.46911 * 110.99905 * 293.95859 * 7 6 5 26 26 C 1.53004 * 117.49706 * 247.88997 * 25 7 6 27 27 C 1.52998 * 117.49690 * 179.26954 * 25 7 6 28 28 O 1.34304 * 108.42042 * 0.42770 * 5 4 3 29 29 H 1.09004 * 109.47186 * 89.99812 * 1 2 3 30 30 H 1.09000 * 109.47583 * 210.00141 * 1 2 3 31 31 H 1.09002 * 109.47155 * 330.00190 * 1 2 3 32 32 H 1.08007 * 126.57554 * 0.04028 * 3 2 1 33 33 H 1.08004 * 126.58348 * 179.73139 * 4 3 2 34 34 H 1.09001 * 109.47497 * 210.34525 * 6 5 4 35 35 H 1.09007 * 109.47260 * 330.34014 * 6 5 4 36 36 H 1.09007 * 109.46434 * 43.97088 * 8 7 6 37 37 H 1.08994 * 109.47467 * 163.96799 * 8 7 6 38 38 H 1.08997 * 109.46550 * 209.99848 * 12 11 9 39 39 H 1.08996 * 109.47193 * 329.99346 * 12 11 9 40 40 H 0.97000 * 120.00436 * 179.97438 * 16 15 13 41 41 H 1.09008 * 109.47158 * 210.00451 * 21 11 9 42 42 H 1.09002 * 109.47122 * 329.99542 * 21 11 9 43 43 H 1.08998 * 109.46617 * 300.00173 * 22 21 11 44 44 H 1.08996 * 109.46938 * 59.99434 * 22 21 11 45 45 H 1.08996 * 115.54672 * 33.59797 * 25 7 6 46 46 H 1.08998 * 117.49684 * 0.02562 * 26 25 7 47 47 H 1.08999 * 117.49493 * 145.01912 * 26 25 7 48 48 H 1.08998 * 117.50003 * 214.97471 * 27 25 7 49 49 H 1.09000 * 117.50071 * 0.02562 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6320 -0.0070 5 6 3.5813 -0.7122 -0.0013 6 6 4.7705 -1.6379 -0.0029 7 7 5.1582 -1.9396 1.3815 8 6 6.1552 -3.0174 1.4261 9 6 5.4765 -4.3400 1.1791 10 8 4.2955 -4.3738 0.9055 11 7 6.1820 -5.4855 1.2625 12 6 5.5220 -6.7713 1.0230 13 6 5.6127 -7.1175 -0.4409 14 1 6.1117 -6.4466 -1.1245 15 6 5.0587 -8.2907 -0.9074 16 7 4.4506 -9.1073 -0.0751 17 14 5.1705 -8.7195 -2.7221 18 1 5.8987 -7.6434 -3.4411 19 1 5.8997 -10.0031 -2.8833 20 1 3.8027 -8.8532 -3.2844 21 6 7.6086 -5.4447 1.5927 22 6 7.7835 -5.5266 3.1104 23 6 9.2171 -5.4862 3.4421 24 7 10.3226 -5.4543 3.6996 25 6 5.6529 -0.7362 2.0638 26 6 7.1373 -0.6929 2.4321 27 6 6.0830 -0.8792 3.5251 28 8 2.2924 -1.0894 -0.0008 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.9665 2.1204 0.0006 33 1 4.5212 1.2433 -0.0129 34 1 4.5101 -2.5630 -0.5171 35 1 5.6035 -1.1585 -0.5173 36 1 6.9092 -2.8469 0.6576 37 1 6.6320 -3.0310 2.4061 38 1 6.0130 -7.5467 1.6109 39 1 4.4743 -6.7021 1.3158 40 1 4.0605 -9.9325 -0.4033 41 1 8.1146 -6.2880 1.1226 42 1 8.0397 -4.5127 1.2270 43 1 7.2775 -4.6833 3.5804 44 1 7.3524 -6.4585 3.4760 45 1 5.1799 0.2000 1.7676 46 1 7.7468 -1.5570 2.1678 47 1 7.6412 0.2721 2.3781 48 1 5.8934 -0.0368 4.1902 49 1 5.9993 -1.8661 3.9801 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604323600.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:24 Heat of formation + Delta-G solvation = 51.618427 kcal Electronic energy + Delta-G solvation = -30582.664362 eV Core-core repulsion = 26513.367403 eV Total energy + Delta-G solvation = -4069.296959 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 8.81 seconds Orbital eigenvalues (eV) -42.49713 -39.86299 -38.24777 -36.85653 -35.27721 -34.20593 -33.08730 -32.91666 -31.91568 -30.84439 -29.29550 -27.49520 -25.95402 -24.15269 -24.01740 -22.84735 -22.46483 -21.62109 -20.43043 -19.98117 -18.54748 -17.66915 -17.30030 -16.53726 -16.47659 -16.32596 -15.69584 -15.48103 -15.13161 -14.77165 -14.60780 -14.24758 -14.15618 -13.87476 -13.74177 -13.42412 -13.23011 -12.95878 -12.86798 -12.79819 -12.46707 -12.45453 -12.40682 -12.27679 -12.03060 -11.85810 -11.62747 -11.53856 -11.36387 -11.27290 -10.99842 -10.95099 -10.84272 -10.63448 -10.46310 -10.18920 -9.79607 -9.68856 -9.00898 -8.47709 -8.30214 -8.09881 -7.83015 -6.08950 -4.13545 1.75436 2.58403 2.71376 2.79461 2.98808 3.27574 3.30217 3.36259 3.38072 3.44538 3.68553 3.93055 4.27823 4.41797 4.55463 4.71718 4.83427 4.85123 4.90742 4.95532 5.02186 5.04836 5.10362 5.15045 5.24170 5.26979 5.31668 5.37174 5.39577 5.45359 5.51016 5.58260 5.67670 5.69860 5.80394 5.81532 5.86639 5.95863 5.97502 6.04572 6.24574 6.57695 6.74373 6.93114 7.01486 7.33316 7.37886 7.44223 7.55490 7.87298 8.17355 8.26903 8.85281 9.01521 9.52175 10.99173 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007470 B = 0.003885 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3747.370508 B = 7204.944919 C =10249.144547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.015 4.015 3 C -0.217 4.217 4 C -0.216 4.216 5 C 0.018 3.982 6 C 0.131 3.869 7 N -0.482 5.482 8 C 0.028 3.972 9 C 0.506 3.494 10 O -0.509 6.509 11 N -0.599 5.599 12 C 0.246 3.754 13 C -0.528 4.528 14 H 0.058 0.942 15 C 0.063 3.937 16 N -0.893 5.893 17 Si 0.895 3.105 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.283 1.283 21 C 0.118 3.882 22 C -0.052 4.052 23 C 0.217 3.783 24 N -0.445 5.445 25 C 0.020 3.980 26 C -0.224 4.224 27 C -0.170 4.170 28 O -0.156 6.156 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.109 0.891 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.102 0.898 38 H 0.034 0.966 39 H 0.047 0.953 40 H 0.263 0.737 41 H 0.095 0.905 42 H 0.072 0.928 43 H 0.105 0.895 44 H 0.118 0.882 45 H 0.126 0.874 46 H 0.098 0.902 47 H 0.094 0.906 48 H 0.097 0.903 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.600 19.341 4.203 19.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.066 4.066 3 C -0.236 4.236 4 C -0.236 4.236 5 C -0.033 4.033 6 C 0.004 3.996 7 N -0.204 5.204 8 C -0.103 4.103 9 C 0.291 3.709 10 O -0.383 6.383 11 N -0.332 5.332 12 C 0.127 3.873 13 C -0.567 4.567 14 H 0.076 0.924 15 C -0.139 4.139 16 N -0.532 5.532 17 Si 0.723 3.277 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.009 4.009 22 C -0.093 4.093 23 C -0.101 4.101 24 N -0.122 5.122 25 C -0.090 4.090 26 C -0.263 4.263 27 C -0.208 4.208 28 O -0.051 6.051 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.161 0.839 33 H 0.161 0.839 34 H 0.128 0.872 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.120 0.880 38 H 0.052 0.948 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.113 0.887 42 H 0.090 0.910 43 H 0.123 0.877 44 H 0.136 0.864 45 H 0.144 0.856 46 H 0.117 0.883 47 H 0.112 0.888 48 H 0.116 0.884 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.943 18.681 4.664 19.278 hybrid contribution 0.517 0.120 -1.386 1.484 sum 1.460 18.801 3.278 19.140 Atomic orbital electron populations 1.20282 0.85455 1.03955 1.03341 1.22452 0.94099 0.84394 1.05649 1.21451 0.92685 0.99057 1.10439 1.21487 0.97999 0.93734 1.10390 1.22084 0.83198 0.93574 1.04440 1.20563 0.90366 0.99111 0.89526 1.61339 1.38753 1.05056 1.15248 1.22274 0.93770 0.91100 1.03150 1.20159 0.87500 0.84717 0.78505 1.90720 1.15208 1.86400 1.45933 1.48217 1.08037 1.08571 1.68401 1.19335 0.94220 0.77182 0.96516 1.21442 1.36679 1.04961 0.93577 0.92393 1.24905 0.94943 0.96195 0.97880 1.69925 1.36925 1.11768 1.34536 0.86487 0.77892 0.78155 0.85145 1.19836 1.21005 1.20882 1.21290 0.84477 1.03905 0.91207 1.19923 0.83117 1.06488 0.99797 1.29090 0.95045 0.92830 0.93169 1.81192 1.12741 1.09348 1.08933 1.22835 0.94366 0.94548 0.97209 1.23629 0.93399 1.03550 1.05740 1.23065 1.02555 1.03475 0.91724 1.84088 1.16234 1.34518 1.70229 0.90282 0.90372 0.89647 0.83906 0.83917 0.87249 0.91581 0.91476 0.87970 0.94784 0.93507 0.92732 0.88679 0.90969 0.87700 0.86368 0.85639 0.88325 0.88784 0.88436 0.88389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.67 10.42 36.00 0.37 -0.29 16 2 C -0.01 -0.19 7.32 -35.63 -0.26 -0.45 16 3 C -0.22 -2.54 10.81 -39.71 -0.43 -2.97 16 4 C -0.22 -2.62 9.22 -39.71 -0.37 -2.98 16 5 C 0.02 0.27 6.35 -35.63 -0.23 0.04 16 6 C 0.13 1.84 5.10 -4.98 -0.03 1.81 16 7 N -0.48 -6.60 4.30 -229.51 -0.99 -7.59 16 8 C 0.03 0.36 2.60 -4.98 -0.01 0.34 16 9 C 0.51 9.16 7.41 -10.98 -0.08 9.07 16 10 O -0.51 -11.75 14.63 5.56 0.08 -11.67 16 11 N -0.60 -10.68 2.46 -175.06 -0.43 -11.11 16 12 C 0.25 5.76 5.16 -5.19 -0.03 5.73 16 13 C -0.53 -13.91 9.39 -34.44 -0.32 -14.23 16 14 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.89 -25.39 13.29 55.43 0.74 -24.66 16 17 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 C 0.12 1.51 5.10 -4.05 -0.02 1.49 16 22 C -0.05 -0.53 5.98 -29.52 -0.18 -0.70 16 23 C 0.22 2.54 15.43 -20.77 -0.32 2.22 16 24 N -0.44 -6.39 18.53 42.14 0.78 -5.61 16 25 C 0.02 0.21 5.83 -67.71 -0.39 -0.18 16 26 C -0.22 -1.96 9.57 -26.73 -0.26 -2.21 16 27 C -0.17 -1.62 9.90 -26.73 -0.26 -1.88 16 28 O -0.16 -2.55 10.65 5.70 0.06 -2.49 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.14 1.29 8.06 -52.48 -0.42 0.87 16 33 H 0.14 1.38 7.79 -52.48 -0.41 0.97 16 34 H 0.11 1.86 6.60 -51.93 -0.34 1.52 16 35 H 0.07 0.75 8.12 -51.93 -0.42 0.33 16 36 H 0.07 0.76 7.31 -51.93 -0.38 0.38 16 37 H 0.10 1.08 4.32 -51.93 -0.22 0.86 16 38 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 39 H 0.05 1.27 7.42 -51.93 -0.39 0.88 16 40 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.09 1.31 8.07 -51.92 -0.42 0.89 16 42 H 0.07 0.75 6.56 -51.93 -0.34 0.41 16 43 H 0.10 0.87 7.14 -51.93 -0.37 0.50 16 44 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.13 1.32 5.77 -51.93 -0.30 1.02 16 46 H 0.10 0.84 6.06 -51.93 -0.31 0.52 16 47 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 48 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.10 0.97 7.40 -51.93 -0.38 0.59 16 LS Contribution 409.42 15.07 6.17 6.17 Total: -1.00 -34.04 409.42 -8.73 -42.78 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -7.21 Total: 1.64 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -2.91 Total: -3.57 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: 0.10 Total: -48.96 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: 0.14 Total: -14.16 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.04 -8.73 -42.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604323600.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.395 kcal (2) G-P(sol) polarization free energy of solvation -34.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.81 seconds