Wall clock time and date at job start Wed Apr 1 2020 05:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.34514 * 125.79314 * 2 1 4 4 C 1.41376 * 106.84522 * 180.29558 * 3 2 1 5 5 C 1.34513 * 106.83955 * 359.57414 * 4 3 2 6 6 C 1.50699 * 125.79212 * 180.11623 * 5 4 3 7 7 N 1.46896 * 109.47584 * 90.34049 * 6 5 4 8 8 C 1.46898 * 111.00735 * 170.00178 * 7 6 5 9 9 C 1.50697 * 109.46990 * 283.97599 * 8 7 6 10 10 O 1.21278 * 120.00053 * 4.43830 * 9 8 7 11 11 N 1.34781 * 119.99815 * 184.44697 * 9 8 7 12 12 C 1.46504 * 119.99634 * 179.97438 * 11 9 8 13 13 C 1.50699 * 109.47200 * 89.99970 * 12 11 9 14 14 H 1.07996 * 119.99715 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00076 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00007 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00093 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47182 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46686 * 120.00311 * 17 15 13 20 20 H 1.48500 * 109.47426 * 240.00315 * 17 15 13 21 21 C 1.46490 * 120.00115 * 359.97438 * 11 9 8 22 22 C 1.52999 * 109.47609 * 90.00109 * 21 11 9 23 23 C 1.47199 * 109.47330 * 179.97438 * 22 21 11 24 24 N 9.77566 * 124.53471 * 333.13485 * 4 1 2 25 25 C 1.46911 * 110.99905 * 293.95859 * 7 6 5 26 26 C 1.53004 * 117.49706 * 247.88997 * 25 7 6 27 27 C 1.52998 * 117.49690 * 179.26954 * 25 7 6 28 28 O 1.34304 * 108.42042 * 0.42770 * 5 4 3 29 29 H 1.09004 * 109.47186 * 89.99812 * 1 2 3 30 30 H 1.09000 * 109.47583 * 210.00141 * 1 2 3 31 31 H 1.09002 * 109.47155 * 330.00190 * 1 2 3 32 32 H 1.08007 * 126.57554 * 0.04028 * 3 2 1 33 33 H 1.08004 * 126.58348 * 179.73139 * 4 3 2 34 34 H 1.09001 * 109.47497 * 210.34525 * 6 5 4 35 35 H 1.09007 * 109.47260 * 330.34014 * 6 5 4 36 36 H 1.09007 * 109.46434 * 43.97088 * 8 7 6 37 37 H 1.08994 * 109.47467 * 163.96799 * 8 7 6 38 38 H 1.08997 * 109.46550 * 209.99848 * 12 11 9 39 39 H 1.08996 * 109.47193 * 329.99346 * 12 11 9 40 40 H 0.97000 * 120.00436 * 179.97438 * 16 15 13 41 41 H 1.09008 * 109.47158 * 210.00451 * 21 11 9 42 42 H 1.09002 * 109.47122 * 329.99542 * 21 11 9 43 43 H 1.08998 * 109.46617 * 300.00173 * 22 21 11 44 44 H 1.08996 * 109.46938 * 59.99434 * 22 21 11 45 45 H 1.08996 * 115.54672 * 33.59797 * 25 7 6 46 46 H 1.08998 * 117.49684 * 0.02562 * 26 25 7 47 47 H 1.08999 * 117.49493 * 145.01912 * 26 25 7 48 48 H 1.08998 * 117.50003 * 214.97471 * 27 25 7 49 49 H 1.09000 * 117.50071 * 0.02562 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6320 -0.0070 5 6 3.5813 -0.7122 -0.0013 6 6 4.7705 -1.6379 -0.0029 7 7 5.1582 -1.9396 1.3815 8 6 6.1552 -3.0174 1.4261 9 6 5.4765 -4.3400 1.1791 10 8 4.2955 -4.3738 0.9055 11 7 6.1820 -5.4855 1.2625 12 6 5.5220 -6.7713 1.0230 13 6 5.6127 -7.1175 -0.4409 14 1 6.1117 -6.4466 -1.1245 15 6 5.0587 -8.2907 -0.9074 16 7 4.4506 -9.1073 -0.0751 17 14 5.1705 -8.7195 -2.7221 18 1 5.8987 -7.6434 -3.4411 19 1 5.8997 -10.0031 -2.8833 20 1 3.8027 -8.8532 -3.2844 21 6 7.6086 -5.4447 1.5927 22 6 7.7835 -5.5266 3.1104 23 6 9.2171 -5.4862 3.4421 24 7 10.3226 -5.4543 3.6996 25 6 5.6529 -0.7362 2.0638 26 6 7.1373 -0.6929 2.4321 27 6 6.0830 -0.8792 3.5251 28 8 2.2924 -1.0894 -0.0008 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.9665 2.1204 0.0006 33 1 4.5212 1.2433 -0.0129 34 1 4.5101 -2.5630 -0.5171 35 1 5.6035 -1.1585 -0.5173 36 1 6.9092 -2.8469 0.6576 37 1 6.6320 -3.0310 2.4061 38 1 6.0130 -7.5467 1.6109 39 1 4.4743 -6.7021 1.3158 40 1 4.0605 -9.9325 -0.4033 41 1 8.1146 -6.2880 1.1226 42 1 8.0397 -4.5127 1.2270 43 1 7.2775 -4.6833 3.5804 44 1 7.3524 -6.4585 3.4760 45 1 5.1799 0.2000 1.7676 46 1 7.7468 -1.5570 2.1678 47 1 7.6412 0.2721 2.3781 48 1 5.8934 -0.0368 4.1902 49 1 5.9993 -1.8661 3.9801 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604323600.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:15 Heat of formation + Delta-G solvation = 30.613969 kcal Electronic energy + Delta-G solvation = -30583.575184 eV Core-core repulsion = 26513.367403 eV Total energy + Delta-G solvation = -4070.207780 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 13.91 seconds Orbital eigenvalues (eV) -43.49059 -41.08531 -39.33035 -37.95922 -36.65718 -35.13781 -34.85149 -34.04723 -32.85809 -32.13911 -30.46528 -28.96338 -27.20260 -25.30574 -25.05817 -24.45245 -23.18179 -22.60021 -21.40444 -20.98281 -19.79981 -18.83210 -18.41998 -18.30979 -17.53238 -17.49886 -16.97912 -16.54569 -16.32675 -16.11171 -15.78430 -15.55255 -15.21755 -14.97056 -14.72539 -14.54181 -14.25912 -14.17898 -13.85014 -13.69547 -13.69270 -13.57653 -13.51658 -13.36280 -13.20533 -13.00580 -12.86380 -12.75386 -12.65945 -12.52788 -12.33870 -12.23356 -12.16957 -11.84730 -11.79333 -11.62753 -11.19802 -10.74213 -10.58585 -10.45898 -9.43360 -9.25283 -9.02345 -8.17110 -6.29184 0.77148 1.38388 1.41251 1.51208 1.66722 1.71328 1.85233 1.94541 2.08164 2.22812 2.43640 2.81659 3.04443 3.14635 3.25363 3.64742 3.83089 3.94195 4.00125 4.03876 4.09231 4.12625 4.15838 4.18294 4.20325 4.31207 4.38212 4.55786 4.56782 4.60625 4.70812 4.84311 4.86339 4.86740 4.94055 4.97207 5.05572 5.08870 5.12478 5.14032 5.31610 5.34137 5.36302 5.63160 5.72394 5.84052 5.93495 6.06933 6.14693 6.37542 6.61391 6.78275 6.84706 7.36712 7.59384 8.89754 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007470 B = 0.003885 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3747.370508 B = 7204.944919 C =10249.144547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.037 4.037 3 C -0.217 4.217 4 C -0.201 4.201 5 C -0.015 4.015 6 C 0.137 3.863 7 N -0.506 5.506 8 C 0.042 3.958 9 C 0.500 3.500 10 O -0.570 6.570 11 N -0.599 5.599 12 C 0.262 3.738 13 C -0.537 4.537 14 H 0.054 0.946 15 C 0.011 3.989 16 N -0.926 5.926 17 Si 0.956 3.044 18 H -0.267 1.267 19 H -0.273 1.273 20 H -0.287 1.287 21 C 0.113 3.887 22 C -0.039 4.039 23 C 0.246 3.754 24 N -0.486 5.486 25 C 0.003 3.997 26 C -0.203 4.203 27 C -0.173 4.173 28 O -0.200 6.200 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.113 0.887 32 H 0.173 0.827 33 H 0.170 0.830 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.133 0.867 38 H 0.034 0.966 39 H 0.000 1.000 40 H 0.265 0.735 41 H 0.085 0.915 42 H 0.106 0.894 43 H 0.133 0.867 44 H 0.119 0.881 45 H 0.127 0.873 46 H 0.106 0.894 47 H 0.111 0.889 48 H 0.109 0.891 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.413 22.122 4.372 22.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.087 4.087 3 C -0.236 4.236 4 C -0.221 4.221 5 C -0.065 4.065 6 C 0.010 3.990 7 N -0.228 5.228 8 C -0.088 4.088 9 C 0.288 3.712 10 O -0.448 6.448 11 N -0.331 5.331 12 C 0.141 3.859 13 C -0.575 4.575 14 H 0.072 0.928 15 C -0.188 4.188 16 N -0.567 5.567 17 Si 0.782 3.218 18 H -0.191 1.191 19 H -0.198 1.198 20 H -0.213 1.213 21 C -0.012 4.012 22 C -0.081 4.081 23 C -0.071 4.071 24 N -0.164 5.164 25 C -0.105 4.105 26 C -0.242 4.242 27 C -0.211 4.211 28 O -0.097 6.097 29 H 0.109 0.891 30 H 0.087 0.913 31 H 0.131 0.869 32 H 0.191 0.809 33 H 0.188 0.812 34 H 0.085 0.915 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.150 0.850 38 H 0.052 0.948 39 H 0.018 0.982 40 H 0.073 0.927 41 H 0.103 0.897 42 H 0.124 0.876 43 H 0.151 0.849 44 H 0.137 0.863 45 H 0.145 0.855 46 H 0.124 0.876 47 H 0.129 0.871 48 H 0.128 0.872 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.816 21.489 4.851 22.209 hybrid contribution -0.112 -0.704 -1.414 1.584 sum 2.703 20.784 3.438 21.240 Atomic orbital electron populations 1.20454 0.83335 1.04831 1.04365 1.23266 0.95624 0.84156 1.05615 1.21856 0.92299 1.00055 1.09402 1.21808 0.99222 0.92813 1.08226 1.22358 0.82766 0.94748 1.06673 1.20450 0.91315 0.97326 0.89902 1.61217 1.39812 1.06518 1.15289 1.22211 0.93390 0.87789 1.05417 1.21155 0.86932 0.86308 0.76839 1.90698 1.18161 1.87381 1.48544 1.48083 1.10027 1.06774 1.68247 1.18756 0.92258 0.79919 0.94973 1.21779 1.36038 1.04709 0.95023 0.92777 1.25713 0.94778 0.96375 1.01939 1.70032 1.37990 1.12266 1.36363 0.85536 0.77644 0.78353 0.80296 1.19130 1.19810 1.21295 1.21526 0.81166 1.05366 0.93095 1.19835 0.82431 1.07893 0.97895 1.29060 0.94704 0.91419 0.91947 1.81238 1.13946 1.10941 1.10274 1.22831 0.96400 0.93317 0.97965 1.23692 0.92032 1.04774 1.03676 1.23166 1.02792 1.03779 0.91370 1.84057 1.17572 1.36684 1.71376 0.89115 0.91343 0.86854 0.80939 0.81217 0.91537 0.89026 0.89003 0.84968 0.94838 0.98183 0.92652 0.89654 0.87587 0.84892 0.86271 0.85500 0.87598 0.87058 0.87230 0.88904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.30 10.42 71.23 0.74 -0.55 16 2 C -0.04 -0.95 7.32 24.83 0.18 -0.76 16 3 C -0.22 -4.72 10.81 22.19 0.24 -4.48 16 4 C -0.20 -4.55 9.22 22.19 0.20 -4.35 16 5 C -0.02 -0.45 6.35 24.83 0.16 -0.29 16 6 C 0.14 3.89 5.10 85.56 0.44 4.33 16 7 N -0.51 -13.43 4.30 -880.05 -3.79 -17.21 16 8 C 0.04 1.01 2.60 85.56 0.22 1.23 16 9 C 0.50 18.34 7.41 87.66 0.65 18.99 16 10 O -0.57 -27.96 14.63 -3.02 -0.04 -28.00 16 11 N -0.60 -21.46 2.46 -826.17 -2.03 -23.49 16 12 C 0.26 12.77 5.16 85.63 0.44 13.21 16 13 C -0.54 -29.09 9.39 25.60 0.24 -28.85 16 14 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 15 C 0.01 0.61 5.46 84.65 0.46 1.07 16 16 N -0.93 -54.30 13.29 21.45 0.28 -54.02 16 17 Si 0.96 44.01 29.54 68.60 2.03 46.03 16 18 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 19 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 20 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 21 C 0.11 2.69 5.10 86.38 0.44 3.13 16 22 C -0.04 -0.70 5.98 28.79 0.17 -0.53 16 23 C 0.25 5.15 15.43 89.45 1.38 6.53 16 24 N -0.49 -13.01 18.53 20.00 0.37 -12.64 16 25 C 0.00 0.06 5.83 44.91 0.26 0.33 16 26 C -0.20 -2.69 9.57 30.60 0.29 -2.40 16 27 C -0.17 -2.76 9.90 30.59 0.30 -2.46 16 28 O -0.20 -6.90 10.65 -2.51 -0.03 -6.92 16 29 H 0.09 1.35 8.14 -2.38 -0.02 1.34 16 30 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.17 2.57 8.06 -2.91 -0.02 2.55 16 33 H 0.17 2.76 7.79 -2.91 -0.02 2.73 16 34 H 0.07 2.44 6.60 -2.39 -0.02 2.42 16 35 H 0.09 1.98 8.12 -2.38 -0.02 1.96 16 36 H 0.09 1.78 7.31 -2.38 -0.02 1.77 16 37 H 0.13 2.33 4.32 -2.39 -0.01 2.32 16 38 H 0.03 1.62 8.07 -2.39 -0.02 1.60 16 39 H 0.00 0.00 7.42 -2.39 -0.02 -0.02 16 40 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 41 H 0.08 2.24 8.07 -2.38 -0.02 2.22 16 42 H 0.11 1.83 6.56 -2.39 -0.02 1.82 16 43 H 0.13 1.72 7.14 -2.39 -0.02 1.70 16 44 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.13 2.36 5.77 -2.39 -0.01 2.35 16 46 H 0.11 1.26 6.06 -2.39 -0.01 1.25 16 47 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 49 H 0.09 1.58 7.40 -2.39 -0.02 1.56 16 Total: -1.00 -80.03 409.42 4.59 -75.44 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.97 Total: 16.67 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: 6.83 Total: 4.15 kcal Atomic # 7 Polarization: -102.20 SS G_CDS: -5.16 Total: -107.36 kcal Atomic # 8 Polarization: -34.86 SS G_CDS: -0.07 Total: -34.93 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -80.03 4.59 -75.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604323600.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.049 kcal (2) G-P(sol) polarization free energy of solvation -80.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 13.92 seconds