Wall clock time and date at job start Wed Apr 1 2020 03:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38230 * 120.41746 * 2 1 4 4 N 1.31855 * 120.76414 * 180.02562 * 3 2 1 5 5 C 1.31887 * 121.72592 * 0.02562 * 4 3 2 6 6 C 1.38182 * 120.76601 * 359.97438 * 5 4 3 7 7 C 1.50697 * 120.41765 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.99398 * 159.64330 * 7 6 5 9 9 C 1.54314 * 109.77226 * 280.79049 * 7 6 5 10 10 C 1.55152 * 102.86303 * 141.88705 * 9 7 6 11 11 C 1.54910 * 101.58249 * 324.30678 * 10 9 7 12 12 N 1.47017 * 109.88329 * 38.54242 * 7 6 5 13 13 C 1.34772 * 125.64697 * 61.68323 * 12 7 6 14 14 O 1.21346 * 120.00529 * 359.71007 * 13 12 7 15 15 C 1.49455 * 119.99616 * 179.71692 * 13 12 7 16 16 O 1.21344 * 120.00320 * 359.97438 * 15 13 12 17 17 N 1.34781 * 119.99763 * 180.02562 * 15 13 12 18 18 C 1.46495 * 120.00121 * 180.02562 * 17 15 13 19 19 C 1.52998 * 109.47351 * 179.97438 * 18 17 15 20 20 C 1.52999 * 109.47303 * 179.97438 * 19 18 17 21 21 C 1.50702 * 109.47525 * 179.97438 * 20 19 18 22 22 H 1.08002 * 119.99441 * 0.02562 * 21 20 19 23 23 C 1.37871 * 120.00075 * 180.02562 * 21 20 19 24 24 N 1.31514 * 120.00481 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99886 * 179.73007 * 23 21 20 26 26 H 1.48502 * 109.46964 * 270.27509 * 25 23 21 27 27 H 1.48505 * 109.47036 * 30.26897 * 25 23 21 28 28 H 1.48490 * 109.47395 * 150.27411 * 25 23 21 29 29 C 1.38627 * 120.42120 * 180.25676 * 2 1 3 30 30 H 1.09005 * 109.47460 * 89.99839 * 1 2 3 31 31 H 1.09003 * 109.46990 * 210.00150 * 1 2 3 32 32 H 1.09002 * 109.47194 * 329.99641 * 1 2 3 33 33 H 1.08000 * 119.61762 * 359.97438 * 3 2 1 34 34 H 1.08000 * 119.61528 * 179.97438 * 5 4 3 35 35 H 1.09001 * 110.92505 * 23.47643 * 9 7 6 36 36 H 1.09005 * 110.74481 * 260.21916 * 9 7 6 37 37 H 1.09002 * 111.00881 * 206.22761 * 10 9 7 38 38 H 1.08998 * 111.03934 * 82.39267 * 10 9 7 39 39 H 1.09000 * 110.36811 * 278.16988 * 11 10 9 40 40 H 1.08993 * 110.46227 * 155.89386 * 11 10 9 41 41 H 0.97003 * 120.00055 * 359.97438 * 17 15 13 42 42 H 1.09000 * 109.47717 * 59.99291 * 18 17 15 43 43 H 1.09007 * 109.47063 * 299.99781 * 18 17 15 44 44 H 1.08995 * 109.47540 * 59.99717 * 19 18 17 45 45 H 1.09001 * 109.46719 * 299.99517 * 19 18 17 46 46 H 1.09009 * 109.47378 * 59.99763 * 20 19 18 47 47 H 1.08998 * 109.47458 * 300.00225 * 20 19 18 48 48 H 0.97005 * 119.99656 * 359.72741 * 24 23 21 49 49 H 1.07998 * 120.79429 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5253 1.2000 -0.0005 5 6 4.2256 0.0824 -0.0015 6 6 3.5948 -1.1470 -0.0016 7 6 4.4028 -2.4191 -0.0022 8 1 3.7921 -3.2486 0.3542 9 6 4.9116 -2.7136 -1.4289 10 6 6.3367 -3.2738 -1.1786 11 6 6.7951 -2.4268 0.0347 12 7 5.5840 -2.2616 0.8589 13 6 5.5630 -2.0133 2.1833 14 8 4.5028 -1.8959 2.7620 15 6 6.8455 -1.8823 2.9394 16 8 7.9056 -2.0000 2.3609 17 7 6.8245 -1.6345 4.2641 18 6 8.0816 -1.5056 5.0052 19 6 7.7787 -1.2271 6.4788 20 6 9.0916 -1.0931 7.2529 21 6 8.7932 -0.8181 8.7043 22 1 7.7695 -0.7466 9.0409 23 6 9.8271 -0.6580 9.6022 24 7 11.0737 -0.7455 9.1924 25 14 9.4574 -0.3097 11.3999 26 1 9.3683 1.1575 11.6117 27 1 8.1663 -0.9426 11.7713 28 1 10.5433 -0.8669 12.2456 29 6 2.2089 -1.1954 -0.0054 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5139 33 1 1.6674 2.1277 -0.0004 34 1 5.3046 0.1287 -0.0023 35 1 4.9550 -1.8008 -2.0230 36 1 4.2840 -3.4598 -1.9163 37 1 6.9811 -3.1021 -2.0408 38 1 6.3017 -4.3332 -0.9246 39 1 7.1631 -1.4561 -0.2976 40 1 7.5673 -2.9524 0.5963 41 1 5.9770 -1.5408 4.7266 42 1 8.6640 -0.6819 4.5924 43 1 8.6505 -2.4315 4.9195 44 1 7.1962 -2.0505 6.8920 45 1 7.2101 -0.3011 6.5641 46 1 9.6745 -0.2698 6.8399 47 1 9.6599 -2.0192 7.1675 48 1 11.2657 -0.9268 8.2589 49 1 1.6889 -2.1419 -0.0092 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875177964.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:10 Heat of formation + Delta-G solvation = -47.896260 kcal Electronic energy + Delta-G solvation = -29657.590379 eV Core-core repulsion = 25583.978140 eV Total energy + Delta-G solvation = -4073.612239 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.36665 -40.31354 -38.91603 -37.75602 -35.75449 -33.91602 -33.68165 -33.06753 -32.02202 -31.19517 -28.65058 -27.64587 -27.07819 -25.27410 -23.82748 -23.31298 -22.57401 -22.11086 -21.07267 -20.84964 -19.53765 -17.86744 -17.57716 -17.28601 -16.88308 -16.64051 -16.25290 -15.70397 -15.55352 -14.96006 -14.77544 -14.53218 -14.12403 -13.90547 -13.76671 -13.74017 -13.59039 -13.45433 -13.35455 -13.14825 -12.97864 -12.91859 -12.67085 -12.48341 -11.98960 -11.94111 -11.66800 -11.61293 -11.32658 -11.25637 -10.97318 -10.79708 -10.16982 -10.06020 -10.02349 -9.94328 -9.78543 -9.50949 -9.25384 -9.08944 -8.95409 -8.59103 -8.34466 -6.38116 -4.07894 0.75025 0.96720 1.35651 2.12503 3.13519 3.33476 3.43482 3.46851 3.50590 3.62673 3.96161 4.07874 4.19659 4.31615 4.39293 4.44458 4.53598 4.57007 4.63715 4.66496 4.80311 4.88412 4.98533 5.16323 5.24557 5.27829 5.38959 5.39199 5.41695 5.46811 5.47469 5.53046 5.57405 5.62340 5.69978 5.80412 5.88278 5.90605 5.94787 6.19100 6.38800 6.40168 6.57741 6.78425 6.88645 7.22071 7.32420 7.44665 7.62204 7.69636 7.97493 8.17020 8.43960 8.86022 9.64419 11.02691 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014153 B = 0.002068 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.851458 B =13537.984897 C =14899.389823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.136 4.136 3 C 0.096 3.904 4 N -0.478 5.478 5 C 0.109 3.891 6 C -0.135 4.135 7 C 0.182 3.818 8 H 0.091 0.909 9 C -0.123 4.123 10 C -0.135 4.135 11 C 0.094 3.906 12 N -0.591 5.591 13 C 0.522 3.478 14 O -0.513 6.513 15 C 0.504 3.496 16 O -0.521 6.521 17 N -0.691 5.691 18 C 0.115 3.885 19 C -0.116 4.116 20 C 0.011 3.989 21 C -0.603 4.603 22 H 0.050 0.950 23 C 0.014 3.986 24 N -0.912 5.912 25 Si 1.072 2.928 26 H -0.288 1.288 27 H -0.289 1.289 28 H -0.284 1.284 29 C -0.062 4.062 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.154 0.846 34 H 0.148 0.852 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.107 0.893 41 H 0.411 0.589 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.011 0.989 47 H 0.011 0.989 48 H 0.269 0.731 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.121 -4.133 -27.115 33.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.138 4.138 3 C -0.061 4.061 4 N -0.185 5.185 5 C -0.049 4.049 6 C -0.137 4.137 7 C 0.078 3.922 8 H 0.109 0.891 9 C -0.161 4.161 10 C -0.173 4.173 11 C -0.028 4.028 12 N -0.326 5.326 13 C 0.306 3.694 14 O -0.387 6.387 15 C 0.284 3.716 16 O -0.398 6.398 17 N -0.343 5.343 18 C -0.008 4.008 19 C -0.154 4.154 20 C -0.026 4.026 21 C -0.642 4.642 22 H 0.068 0.932 23 C -0.190 4.190 24 N -0.548 5.548 25 Si 0.901 3.099 26 H -0.214 1.214 27 H -0.215 1.215 28 H -0.210 1.210 29 C -0.089 4.089 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.171 0.829 34 H 0.165 0.835 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.125 0.875 41 H 0.247 0.753 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.029 0.971 47 H 0.029 0.971 48 H 0.080 0.920 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -17.750 -3.047 -25.613 31.310 hybrid contribution -1.572 -0.980 -1.217 2.217 sum -19.322 -4.027 -26.830 33.308 Atomic orbital electron populations 1.20718 0.90051 1.03349 1.02521 1.20909 0.97638 0.94033 1.01254 1.22706 0.89962 0.97539 0.95921 1.67704 1.08379 1.30998 1.11444 1.22458 1.00098 0.87112 0.95200 1.20973 0.94589 0.96371 1.01808 1.20476 0.86476 0.94383 0.90900 0.89104 1.22733 0.97113 1.02371 0.93876 1.22879 0.95930 1.00218 0.98278 1.22741 0.87532 1.00983 0.91528 1.48340 1.08506 1.69366 1.06372 1.20056 0.90028 0.77961 0.81397 1.90775 1.31959 1.48350 1.67625 1.19884 0.89009 0.79131 0.83574 1.90705 1.31607 1.49305 1.68178 1.46033 1.11998 1.68902 1.07335 1.21833 0.83958 1.02125 0.92835 1.21788 1.01669 1.01181 0.90747 1.19160 0.91501 0.96398 0.95557 1.22036 0.94966 1.53753 0.93414 0.93191 1.25872 0.93094 0.94183 1.05831 1.70756 1.19462 1.45431 1.19177 0.83497 0.75196 0.76629 0.74622 1.21425 1.21487 1.20970 1.21263 0.92941 0.98372 0.96278 0.90889 0.91234 0.91049 0.82854 0.83513 0.90009 0.89355 0.89199 0.90190 0.90746 0.87519 0.75309 0.91134 0.91131 0.92268 0.92256 0.97098 0.97099 0.92028 0.84870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.59 10.04 36.00 0.36 -0.23 16 2 C -0.14 -1.16 5.90 -104.48 -0.62 -1.78 16 3 C 0.10 0.95 10.86 -17.54 -0.19 0.76 16 4 N -0.48 -5.91 10.36 -13.25 -0.14 -6.05 16 5 C 0.11 1.25 10.33 -17.55 -0.18 1.07 16 6 C -0.13 -1.32 4.09 -104.48 -0.43 -1.75 16 7 C 0.18 1.53 3.07 -68.11 -0.21 1.32 16 8 H 0.09 0.75 8.05 -51.93 -0.42 0.33 16 9 C -0.12 -0.66 6.46 -24.90 -0.16 -0.82 16 10 C -0.14 -0.73 7.08 -24.58 -0.17 -0.91 16 11 C 0.09 0.82 6.07 -2.53 -0.02 0.80 16 12 N -0.59 -6.29 2.34 -164.84 -0.39 -6.68 16 13 C 0.52 7.20 7.56 -11.58 -0.09 7.11 16 14 O -0.51 -8.07 16.31 5.50 0.09 -7.98 16 15 C 0.50 7.63 7.86 -11.58 -0.09 7.53 16 16 O -0.52 -8.47 13.78 5.50 0.08 -8.39 16 17 N -0.69 -10.62 5.55 -60.73 -0.34 -10.96 16 18 C 0.11 1.98 5.67 -4.05 -0.02 1.95 16 19 C -0.12 -2.30 5.27 -26.73 -0.14 -2.45 16 20 C 0.01 0.29 4.28 -27.88 -0.12 0.17 16 21 C -0.60 -17.16 9.11 -34.44 -0.31 -17.47 16 22 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 23 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16 24 N -0.91 -28.05 13.65 55.43 0.76 -27.29 16 25 Si 1.07 25.45 29.90 -169.99 -5.08 20.37 16 26 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 27 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 28 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 29 C -0.06 -0.54 9.52 -39.27 -0.37 -0.92 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 32 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 33 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.15 1.66 7.70 -52.49 -0.40 1.26 16 35 H 0.08 0.45 7.82 -51.93 -0.41 0.04 16 36 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.11 1.11 6.15 -51.93 -0.32 0.79 16 41 H 0.41 5.92 7.94 -40.82 -0.32 5.60 16 42 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 44 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.01 0.28 8.01 -51.92 -0.42 -0.13 16 47 H 0.01 0.28 8.00 -51.93 -0.42 -0.13 16 48 H 0.27 8.22 7.22 -40.82 -0.29 7.93 16 49 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 406.06 15.07 6.12 6.12 Total: -1.00 -34.59 406.06 -9.45 -44.04 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -7.69 Total: 2.12 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -2.86 Total: -5.29 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: -0.10 Total: -50.98 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: 0.17 Total: -16.37 kcal Atomic # 14 Polarization: 25.45 SS G_CDS: -5.08 Total: 20.37 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.59 -9.45 -44.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875177964.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.855 kcal (2) G-P(sol) polarization free energy of solvation -34.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds