Wall clock time and date at job start Wed Apr 1 2020 03:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38230 * 120.41746 * 2 1 4 4 N 1.31855 * 120.76414 * 180.02562 * 3 2 1 5 5 C 1.31887 * 121.72592 * 0.02562 * 4 3 2 6 6 C 1.38182 * 120.76601 * 359.97438 * 5 4 3 7 7 C 1.50697 * 120.41765 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.99398 * 159.64330 * 7 6 5 9 9 C 1.54314 * 109.77226 * 280.79049 * 7 6 5 10 10 C 1.55152 * 102.86303 * 141.88705 * 9 7 6 11 11 C 1.54910 * 101.58249 * 324.30678 * 10 9 7 12 12 N 1.47017 * 109.88329 * 38.54242 * 7 6 5 13 13 C 1.34772 * 125.64697 * 61.68323 * 12 7 6 14 14 O 1.21346 * 120.00529 * 359.71007 * 13 12 7 15 15 C 1.49455 * 119.99616 * 179.71692 * 13 12 7 16 16 O 1.21344 * 120.00320 * 359.97438 * 15 13 12 17 17 N 1.34781 * 119.99763 * 180.02562 * 15 13 12 18 18 C 1.46495 * 120.00121 * 180.02562 * 17 15 13 19 19 C 1.52998 * 109.47351 * 179.97438 * 18 17 15 20 20 C 1.52999 * 109.47303 * 179.97438 * 19 18 17 21 21 C 1.50702 * 109.47525 * 179.97438 * 20 19 18 22 22 H 1.08002 * 119.99441 * 0.02562 * 21 20 19 23 23 C 1.37871 * 120.00075 * 180.02562 * 21 20 19 24 24 N 1.31514 * 120.00481 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99886 * 179.73007 * 23 21 20 26 26 H 1.48502 * 109.46964 * 270.27509 * 25 23 21 27 27 H 1.48505 * 109.47036 * 30.26897 * 25 23 21 28 28 H 1.48490 * 109.47395 * 150.27411 * 25 23 21 29 29 C 1.38627 * 120.42120 * 180.25676 * 2 1 3 30 30 H 1.09005 * 109.47460 * 89.99839 * 1 2 3 31 31 H 1.09003 * 109.46990 * 210.00150 * 1 2 3 32 32 H 1.09002 * 109.47194 * 329.99641 * 1 2 3 33 33 H 1.08000 * 119.61762 * 359.97438 * 3 2 1 34 34 H 1.08000 * 119.61528 * 179.97438 * 5 4 3 35 35 H 1.09001 * 110.92505 * 23.47643 * 9 7 6 36 36 H 1.09005 * 110.74481 * 260.21916 * 9 7 6 37 37 H 1.09002 * 111.00881 * 206.22761 * 10 9 7 38 38 H 1.08998 * 111.03934 * 82.39267 * 10 9 7 39 39 H 1.09000 * 110.36811 * 278.16988 * 11 10 9 40 40 H 1.08993 * 110.46227 * 155.89386 * 11 10 9 41 41 H 0.97003 * 120.00055 * 359.97438 * 17 15 13 42 42 H 1.09000 * 109.47717 * 59.99291 * 18 17 15 43 43 H 1.09007 * 109.47063 * 299.99781 * 18 17 15 44 44 H 1.08995 * 109.47540 * 59.99717 * 19 18 17 45 45 H 1.09001 * 109.46719 * 299.99517 * 19 18 17 46 46 H 1.09009 * 109.47378 * 59.99763 * 20 19 18 47 47 H 1.08998 * 109.47458 * 300.00225 * 20 19 18 48 48 H 0.97005 * 119.99656 * 359.72741 * 24 23 21 49 49 H 1.07998 * 120.79429 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5253 1.2000 -0.0005 5 6 4.2256 0.0824 -0.0015 6 6 3.5948 -1.1470 -0.0016 7 6 4.4028 -2.4191 -0.0022 8 1 3.7921 -3.2486 0.3542 9 6 4.9116 -2.7136 -1.4289 10 6 6.3367 -3.2738 -1.1786 11 6 6.7951 -2.4268 0.0347 12 7 5.5840 -2.2616 0.8589 13 6 5.5630 -2.0133 2.1833 14 8 4.5028 -1.8959 2.7620 15 6 6.8455 -1.8823 2.9394 16 8 7.9056 -2.0000 2.3609 17 7 6.8245 -1.6345 4.2641 18 6 8.0816 -1.5056 5.0052 19 6 7.7787 -1.2271 6.4788 20 6 9.0916 -1.0931 7.2529 21 6 8.7932 -0.8181 8.7043 22 1 7.7695 -0.7466 9.0409 23 6 9.8271 -0.6580 9.6022 24 7 11.0737 -0.7455 9.1924 25 14 9.4574 -0.3097 11.3999 26 1 9.3683 1.1575 11.6117 27 1 8.1663 -0.9426 11.7713 28 1 10.5433 -0.8669 12.2456 29 6 2.2089 -1.1954 -0.0054 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5139 33 1 1.6674 2.1277 -0.0004 34 1 5.3046 0.1287 -0.0023 35 1 4.9550 -1.8008 -2.0230 36 1 4.2840 -3.4598 -1.9163 37 1 6.9811 -3.1021 -2.0408 38 1 6.3017 -4.3332 -0.9246 39 1 7.1631 -1.4561 -0.2976 40 1 7.5673 -2.9524 0.5963 41 1 5.9770 -1.5408 4.7266 42 1 8.6640 -0.6819 4.5924 43 1 8.6505 -2.4315 4.9195 44 1 7.1962 -2.0505 6.8920 45 1 7.2101 -0.3011 6.5641 46 1 9.6745 -0.2698 6.8399 47 1 9.6599 -2.0192 7.1675 48 1 11.2657 -0.9268 8.2589 49 1 1.6889 -2.1419 -0.0092 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875177964.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:09 Heat of formation + Delta-G solvation = -69.789877 kcal Electronic energy + Delta-G solvation = -29658.539758 eV Core-core repulsion = 25583.978140 eV Total energy + Delta-G solvation = -4074.561618 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.26143 -41.24414 -39.92357 -38.71022 -37.30524 -35.57058 -34.56942 -33.79755 -33.03690 -32.72875 -29.32012 -28.73704 -28.21908 -26.54139 -25.07085 -24.35807 -23.66753 -22.82012 -22.61819 -21.84267 -20.55643 -18.99816 -18.84827 -18.39385 -18.14209 -17.63155 -17.25122 -16.76135 -16.68224 -16.04750 -15.83820 -15.65485 -15.39467 -15.18152 -14.94341 -14.90342 -14.52265 -14.34275 -14.23194 -14.03357 -13.69627 -13.66599 -13.65963 -13.46992 -13.34711 -13.03246 -12.83578 -12.69168 -12.62758 -12.26025 -12.05648 -12.03033 -11.87661 -11.86377 -11.75457 -10.84770 -10.69356 -10.60812 -10.55865 -10.49693 -10.41767 -10.02885 -9.74090 -8.70167 -6.41072 0.02178 0.20801 0.26413 1.09775 1.52576 1.61607 1.79295 1.98466 2.32086 2.56285 2.73704 3.14774 3.15271 3.34142 3.53198 3.60278 3.64808 3.85309 3.91617 3.96597 4.01066 4.01881 4.08661 4.22490 4.30520 4.34417 4.44551 4.60478 4.68772 4.71504 4.78240 4.81714 4.83476 4.83970 4.88807 4.90404 5.01068 5.08010 5.12053 5.16551 5.20041 5.26685 5.28394 5.33313 5.43271 5.71468 5.87013 5.96787 6.09789 6.17502 6.51504 6.55883 6.78758 6.94405 7.40708 8.70998 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014153 B = 0.002068 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.851458 B =13537.984897 C =14899.389823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.132 4.132 3 C 0.078 3.922 4 N -0.511 5.511 5 C 0.085 3.915 6 C -0.136 4.136 7 C 0.176 3.824 8 H 0.099 0.901 9 C -0.112 4.112 10 C -0.122 4.122 11 C 0.086 3.914 12 N -0.582 5.582 13 C 0.523 3.477 14 O -0.538 6.538 15 C 0.503 3.497 16 O -0.535 6.535 17 N -0.689 5.689 18 C 0.130 3.870 19 C -0.100 4.100 20 C 0.010 3.990 21 C -0.619 4.619 22 H 0.054 0.946 23 C -0.041 4.041 24 N -0.938 5.938 25 Si 1.121 2.879 26 H -0.273 1.273 27 H -0.268 1.268 28 H -0.283 1.283 29 C -0.070 4.070 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.172 0.828 34 H 0.137 0.863 35 H 0.082 0.918 36 H 0.116 0.884 37 H 0.111 0.889 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.089 0.911 41 H 0.417 0.583 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.063 0.937 46 H -0.007 1.007 47 H -0.005 1.005 48 H 0.256 0.744 49 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.622 -5.055 -28.251 35.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.134 4.134 3 C -0.079 4.079 4 N -0.219 5.219 5 C -0.072 4.072 6 C -0.139 4.139 7 C 0.073 3.927 8 H 0.117 0.883 9 C -0.150 4.150 10 C -0.160 4.160 11 C -0.035 4.035 12 N -0.315 5.315 13 C 0.305 3.695 14 O -0.415 6.415 15 C 0.283 3.717 16 O -0.412 6.412 17 N -0.341 5.341 18 C 0.007 3.993 19 C -0.138 4.138 20 C -0.028 4.028 21 C -0.657 4.657 22 H 0.072 0.928 23 C -0.239 4.239 24 N -0.575 5.575 25 Si 0.942 3.058 26 H -0.198 1.198 27 H -0.193 1.193 28 H -0.208 1.208 29 C -0.096 4.096 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.189 0.811 34 H 0.154 0.846 35 H 0.100 0.900 36 H 0.134 0.866 37 H 0.129 0.871 38 H 0.107 0.893 39 H 0.092 0.908 40 H 0.107 0.893 41 H 0.254 0.746 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.082 0.918 46 H 0.012 0.988 47 H 0.014 0.986 48 H 0.066 0.934 49 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -20.265 -3.981 -26.814 33.845 hybrid contribution -0.811 -0.682 -0.961 1.431 sum -21.076 -4.663 -27.775 35.177 Atomic orbital electron populations 1.20786 0.87639 1.04119 1.03811 1.21272 0.99338 0.93389 0.99420 1.23110 0.89449 0.99141 0.96239 1.67628 1.09808 1.31840 1.12633 1.22404 0.99837 0.87916 0.97032 1.21092 0.95378 0.96081 1.01325 1.20794 0.85676 0.94002 0.92227 0.88269 1.22751 0.97201 1.03189 0.91820 1.22868 0.96137 0.99880 0.97142 1.22882 0.86653 1.01527 0.92448 1.48445 1.10303 1.67222 1.05579 1.19690 0.88822 0.78521 0.82440 1.90756 1.32175 1.50150 1.68411 1.20227 0.89651 0.78439 0.83349 1.90702 1.32362 1.49738 1.68435 1.45867 1.11437 1.69214 1.07616 1.21453 0.84706 1.01719 0.91430 1.21519 0.98815 1.01742 0.91717 1.19101 0.93742 0.94795 0.95160 1.22490 0.95186 1.53027 0.94997 0.92811 1.27467 0.92616 0.93411 1.10376 1.70891 1.20637 1.47529 1.18478 0.82886 0.75906 0.77466 0.69546 1.19850 1.19271 1.20841 1.21638 0.92614 0.99647 0.95679 0.89187 0.90396 0.90359 0.81132 0.84591 0.89980 0.86567 0.87108 0.89336 0.90846 0.89267 0.74620 0.91776 0.91404 0.91520 0.91796 0.98848 0.98639 0.93433 0.82334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.04 71.23 0.71 -0.16 16 2 C -0.13 -2.03 5.90 -19.78 -0.12 -2.15 16 3 C 0.08 1.50 10.86 84.69 0.92 2.42 16 4 N -0.51 -12.89 10.36 -195.84 -2.03 -14.92 16 5 C 0.08 1.99 10.33 84.67 0.87 2.86 16 6 C -0.14 -2.54 4.09 -19.77 -0.08 -2.62 16 7 C 0.18 2.68 3.07 44.59 0.14 2.82 16 8 H 0.10 1.39 8.05 -2.39 -0.02 1.37 16 9 C -0.11 -0.90 6.46 31.78 0.21 -0.70 16 10 C -0.12 -1.03 7.08 31.98 0.23 -0.80 16 11 C 0.09 1.45 6.07 86.86 0.53 1.98 16 12 N -0.58 -12.08 2.34 -793.80 -1.86 -13.94 16 13 C 0.52 14.42 7.56 87.27 0.66 15.08 16 14 O -0.54 -16.88 16.31 -3.23 -0.05 -16.93 16 15 C 0.50 15.39 7.86 87.27 0.69 16.07 16 16 O -0.53 -17.69 13.78 -3.23 -0.04 -17.73 16 17 N -0.69 -21.30 5.55 -464.41 -2.58 -23.87 16 18 C 0.13 4.54 5.67 86.38 0.49 5.03 16 19 C -0.10 -3.99 5.27 30.59 0.16 -3.83 16 20 C 0.01 0.50 4.28 29.85 0.13 0.63 16 21 C -0.62 -35.42 9.11 25.60 0.23 -35.19 16 22 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 23 C -0.04 -2.42 5.46 84.65 0.46 -1.96 16 24 N -0.94 -58.75 13.65 21.45 0.29 -58.46 16 25 Si 1.12 50.65 29.90 68.60 2.05 52.70 16 26 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 27 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 28 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 29 C -0.07 -1.09 9.52 22.47 0.21 -0.87 16 30 H 0.09 0.47 8.14 -2.38 -0.02 0.45 16 31 H 0.08 0.54 8.10 -2.39 -0.02 0.52 16 32 H 0.08 0.55 8.09 -2.39 -0.02 0.53 16 33 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16 34 H 0.14 3.27 7.70 -2.91 -0.02 3.25 16 35 H 0.08 0.71 7.82 -2.39 -0.02 0.69 16 36 H 0.12 0.37 8.14 -2.38 -0.02 0.35 16 37 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.09 1.85 6.15 -2.39 -0.01 1.84 16 41 H 0.42 11.97 7.94 -92.71 -0.74 11.23 16 42 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 44 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 45 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 46 H -0.01 -0.37 8.01 -2.38 -0.02 -0.39 16 47 H 0.00 -0.26 8.00 -2.39 -0.02 -0.27 16 48 H 0.26 16.21 7.22 -92.70 -0.67 15.54 16 49 H 0.16 1.57 8.06 -2.91 -0.02 1.54 16 Total: -1.00 -76.26 406.06 2.54 -73.72 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 0.32 Total: 20.82 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: 6.44 Total: -1.39 kcal Atomic # 7 Polarization: -105.02 SS G_CDS: -6.17 Total: -111.19 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -0.10 Total: -34.67 kcal Atomic # 14 Polarization: 50.65 SS G_CDS: 2.05 Total: 52.70 kcal Total: -76.26 2.54 -73.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875177964.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.931 kcal (2) G-P(sol) polarization free energy of solvation -76.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds