Wall clock time and date at job start Wed Apr 1 2020 06:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 110.43261 * 2 1 4 4 C 1.34770 * 120.00247 * 302.54021 * 3 2 1 5 5 O 1.21588 * 119.99812 * 0.02562 * 4 3 2 6 6 N 1.34777 * 120.00219 * 180.02562 * 4 3 2 7 7 C 1.46501 * 120.00315 * 179.97438 * 6 4 3 8 8 H 1.09000 * 109.46875 * 325.00013 * 7 6 4 9 9 C 1.52993 * 109.47057 * 204.99846 * 7 6 4 10 10 C 1.52999 * 109.47098 * 65.00239 * 9 7 6 11 11 C 1.50699 * 109.47209 * 179.97438 * 10 9 7 12 12 H 1.08004 * 119.99760 * 359.97438 * 11 10 9 13 13 C 1.37880 * 120.00355 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99771 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00228 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47510 * 89.99600 * 15 13 11 17 17 H 1.48507 * 109.46974 * 209.99893 * 15 13 11 18 18 H 1.48504 * 109.47152 * 329.99549 * 15 13 11 19 19 C 1.50700 * 109.46920 * 84.99612 * 7 6 4 20 20 C 1.38235 * 120.00255 * 219.99808 * 19 7 6 21 21 C 1.38234 * 120.00220 * 179.97438 * 20 19 7 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38238 * 119.99742 * 359.52139 * 22 21 20 24 24 C 1.38234 * 120.00095 * 0.43554 * 23 22 21 25 25 C 1.54630 * 110.48318 * 122.54446 * 2 1 3 26 26 C 1.54471 * 101.76690 * 94.01282 * 25 2 1 27 27 N 1.46769 * 105.47575 * 25.40926 * 26 25 2 28 28 C 1.34420 * 111.29677 * 342.99034 * 27 26 25 29 29 O 1.21283 * 124.93850 * 180.40817 * 28 27 26 30 30 H 1.09006 * 109.47295 * 59.29779 * 1 2 3 31 31 H 1.09003 * 109.47823 * 179.30027 * 1 2 3 32 32 H 1.09006 * 109.47042 * 299.29663 * 1 2 3 33 33 H 0.97003 * 119.99278 * 122.54710 * 3 2 1 34 34 H 0.96998 * 120.00080 * 0.02562 * 6 4 3 35 35 H 1.09007 * 109.47107 * 184.99930 * 9 7 6 36 36 H 1.08998 * 109.47575 * 304.99474 * 9 7 6 37 37 H 1.09000 * 109.47018 * 299.99411 * 10 9 7 38 38 H 1.09002 * 109.47229 * 59.99897 * 10 9 7 39 39 H 0.96996 * 120.00257 * 180.02562 * 14 13 11 40 40 H 1.07999 * 119.99770 * 0.02562 * 20 19 7 41 41 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 42 42 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 43 43 H 1.08003 * 120.00354 * 180.21032 * 23 22 21 44 44 H 1.08001 * 120.00324 * 179.78922 * 24 23 22 45 45 H 1.09002 * 110.96384 * 212.13257 * 25 2 1 46 46 H 1.09000 * 110.96987 * 335.89039 * 25 2 1 47 47 H 1.08997 * 110.25408 * 144.41308 * 26 25 2 48 48 H 1.09007 * 110.24523 * 266.32642 * 26 25 2 49 49 H 0.97000 * 124.35286 * 162.96308 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0415 1.3728 0.0000 4 6 1.6884 2.2235 -0.9839 5 8 0.9451 1.8517 -1.8713 6 7 2.1594 3.4863 -0.9842 7 6 1.7761 4.4109 -2.0540 8 1 1.6798 3.8624 -2.9910 9 6 2.8492 5.4911 -2.2032 10 6 4.1568 4.8497 -2.6718 11 6 5.2136 5.9138 -2.8194 12 1 4.9762 6.9446 -2.6012 13 6 6.4836 5.5716 -3.2329 14 7 6.7726 4.3165 -3.4991 15 14 7.7938 6.8905 -3.4152 16 1 8.5225 7.0453 -2.1307 17 1 8.7489 6.4955 -4.4816 18 1 7.1516 8.1793 -3.7785 19 6 0.4578 5.0560 -1.7119 20 6 -0.4898 5.2572 -2.6981 21 6 -1.6992 5.8486 -2.3842 22 6 -1.9587 6.2442 -1.0854 23 6 -1.0127 6.0394 -0.0984 24 6 0.1964 5.4472 -0.4121 25 6 2.0711 -0.7792 1.2211 26 6 2.2805 -2.1897 0.6271 27 7 2.4801 -1.9829 -0.8122 28 6 2.0622 -0.7633 -1.1927 29 8 2.1054 -0.3370 -2.3273 30 1 -0.3634 0.5247 -0.8837 31 1 -0.3635 -1.0276 -0.0125 32 1 -0.3633 0.5029 0.8963 33 1 2.6343 1.6694 0.7082 34 1 2.7527 3.7828 -0.2764 35 1 2.5229 6.2285 -2.9368 36 1 3.0083 5.9804 -1.2424 37 1 4.4831 4.1124 -1.9383 38 1 3.9976 4.3605 -3.6328 39 1 7.6661 4.0756 -3.7896 40 1 -0.2855 4.9517 -3.7136 41 1 -2.4396 6.0054 -3.1546 42 1 -2.9018 6.7102 -0.8409 43 1 -1.2167 6.3453 0.9171 44 1 0.9369 5.2903 0.3583 45 1 3.0151 -0.3571 1.5660 46 1 1.3373 -0.8002 2.0268 47 1 3.1615 -2.6573 1.0667 48 1 1.3994 -2.8073 0.8021 49 1 2.8646 -2.6414 -1.4117 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895040607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:44:11 Heat of formation + Delta-G solvation = -39.645949 kcal Electronic energy + Delta-G solvation = -30986.632251 eV Core-core repulsion = 26913.377772 eV Total energy + Delta-G solvation = -4073.254479 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 2.58 seconds Orbital eigenvalues (eV) -40.98889 -39.60705 -38.47911 -36.45787 -35.72994 -34.27052 -33.10789 -31.86754 -30.66197 -30.26083 -30.16193 -28.75320 -26.40836 -25.34296 -23.56825 -22.39981 -22.22606 -21.51681 -20.83066 -19.82886 -19.38275 -18.11609 -17.27301 -16.80251 -16.33598 -16.22813 -15.98648 -15.22408 -15.10638 -14.52110 -14.43809 -14.25735 -14.06647 -13.90786 -13.68189 -13.48322 -13.15178 -13.03530 -12.79886 -12.68301 -12.50758 -12.40581 -12.22582 -12.10098 -11.93997 -11.63682 -11.28645 -11.05205 -10.93518 -10.85855 -10.56131 -10.49710 -10.04781 -9.87024 -9.48896 -9.43596 -9.15888 -9.09679 -8.76793 -8.66720 -8.48086 -8.34127 -8.30571 -5.96373 -3.99787 1.61639 1.66121 2.54623 3.05946 3.29248 3.32567 3.39426 3.42799 3.70285 4.03695 4.08867 4.26034 4.47510 4.51310 4.61679 4.70984 5.11265 5.12213 5.13618 5.17816 5.21435 5.37126 5.38352 5.38757 5.52557 5.56887 5.69701 5.72795 5.75260 5.86749 6.01336 6.21246 6.27242 6.27551 6.47403 6.53610 6.64248 6.71529 6.75995 6.81300 6.86996 6.97810 7.05114 7.10396 7.25421 7.29228 7.71904 7.84754 8.03809 8.36339 8.39413 8.44841 9.07860 9.09669 9.64190 11.14259 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.006934 B = 0.004125 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4036.816167 B = 6785.889950 C = 9993.460791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.170 3.830 3 N -0.737 5.737 4 C 0.706 3.294 5 O -0.560 6.560 6 N -0.727 5.727 7 C 0.201 3.799 8 H 0.094 0.906 9 C -0.112 4.112 10 C 0.026 3.974 11 C -0.522 4.522 12 H 0.055 0.945 13 C 0.058 3.942 14 N -0.892 5.892 15 Si 0.890 3.110 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.075 4.075 20 C -0.105 4.105 21 C -0.122 4.122 22 C -0.132 4.132 23 C -0.126 4.126 24 C -0.106 4.106 25 C -0.138 4.138 26 C 0.107 3.893 27 N -0.742 5.742 28 C 0.505 3.495 29 O -0.480 6.480 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.397 0.603 34 H 0.394 0.606 35 H 0.066 0.934 36 H 0.054 0.946 37 H 0.018 0.982 38 H 0.016 0.984 39 H 0.260 0.740 40 H 0.122 0.878 41 H 0.117 0.883 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.090 0.910 46 H 0.099 0.901 47 H 0.081 0.919 48 H 0.072 0.928 49 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.416 -9.677 14.554 22.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.078 3.922 3 N -0.395 5.395 4 C 0.406 3.594 5 O -0.435 6.435 6 N -0.381 5.381 7 C 0.096 3.904 8 H 0.112 0.888 9 C -0.150 4.150 10 C -0.012 4.012 11 C -0.560 4.560 12 H 0.073 0.927 13 C -0.143 4.143 14 N -0.531 5.531 15 Si 0.718 3.282 16 H -0.208 1.208 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.077 4.077 20 C -0.124 4.124 21 C -0.140 4.140 22 C -0.150 4.150 23 C -0.144 4.144 24 C -0.124 4.124 25 C -0.176 4.176 26 C -0.018 4.018 27 N -0.401 5.401 28 C 0.287 3.713 29 O -0.349 6.349 30 H 0.112 0.888 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.231 0.769 34 H 0.228 0.772 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.036 0.964 38 H 0.035 0.965 39 H 0.069 0.931 40 H 0.140 0.860 41 H 0.135 0.865 42 H 0.132 0.868 43 H 0.133 0.867 44 H 0.134 0.866 45 H 0.108 0.892 46 H 0.117 0.883 47 H 0.099 0.901 48 H 0.090 0.910 49 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -14.998 -9.779 13.061 22.162 hybrid contribution 1.681 0.547 0.427 1.819 sum -13.317 -9.232 13.488 21.083 Atomic orbital electron populations 1.22091 0.91563 1.02533 1.04918 1.20638 0.95845 0.81802 0.93907 1.44936 1.54675 1.10408 1.29470 1.15877 0.80985 0.80634 0.81892 1.90916 1.39649 1.76219 1.36746 1.45082 1.52665 1.10327 1.29989 1.19950 0.90293 0.89858 0.90311 0.88829 1.21968 0.95741 0.96007 1.01255 1.19076 0.89606 0.95768 0.96701 1.21244 0.95421 0.94108 1.45274 0.92719 1.25018 0.98614 0.95201 0.95509 1.69985 1.20646 1.16442 1.46041 0.86635 0.81719 0.82170 0.77708 1.20766 1.21277 1.19869 1.20479 0.96353 0.97193 0.93626 1.21047 0.93209 0.98696 0.99441 1.21066 0.97080 0.99381 0.96464 1.21026 0.99214 1.01314 0.93466 1.21044 0.94280 1.00137 0.98900 1.20880 0.96824 0.98557 0.96167 1.22976 1.03109 0.94582 0.96938 1.21955 1.02091 0.96897 0.80895 1.46206 1.65894 1.17681 1.10313 1.21109 0.77650 0.82178 0.90358 1.90880 1.52351 1.70533 1.21155 0.88845 0.91932 0.91542 0.76851 0.77228 0.91543 0.92700 0.96360 0.96517 0.93062 0.86030 0.86491 0.86766 0.86708 0.86602 0.89152 0.88296 0.90095 0.90965 0.75221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 8.41 37.16 0.31 -1.45 16 2 C 0.17 2.01 0.89 -131.83 -0.12 1.90 16 3 N -0.74 -9.81 5.15 -52.43 -0.27 -10.08 16 4 C 0.71 12.46 7.78 -86.92 -0.68 11.79 16 5 O -0.56 -12.03 12.02 -16.35 -0.20 -12.22 16 6 N -0.73 -12.19 3.78 -59.82 -0.23 -12.42 16 7 C 0.20 3.70 2.17 -69.08 -0.15 3.55 16 8 H 0.09 2.00 7.44 -51.93 -0.39 1.61 16 9 C -0.11 -2.26 4.67 -26.73 -0.12 -2.39 16 10 C 0.03 0.66 4.86 -27.88 -0.14 0.52 16 11 C -0.52 -14.72 9.11 -34.44 -0.31 -15.04 16 12 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 14 N -0.89 -27.26 13.29 55.43 0.74 -26.52 16 15 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 19 C -0.08 -1.23 4.91 -104.62 -0.51 -1.75 16 20 C -0.11 -1.66 9.67 -39.58 -0.38 -2.04 16 21 C -0.12 -1.65 10.05 -39.58 -0.40 -2.05 16 22 C -0.13 -1.67 10.05 -39.58 -0.40 -2.06 16 23 C -0.13 -1.62 10.05 -39.58 -0.40 -2.02 16 24 C -0.11 -1.54 9.32 -39.58 -0.37 -1.91 16 25 C -0.14 -0.92 6.33 -25.10 -0.16 -1.08 16 26 C 0.11 0.66 7.78 -3.12 -0.02 0.63 16 27 N -0.74 -7.70 6.24 -59.20 -0.37 -8.07 16 28 C 0.50 7.73 7.29 -10.86 -0.08 7.65 16 29 O -0.48 -10.29 15.65 -16.09 -0.25 -10.54 16 30 H 0.09 1.48 6.05 -51.93 -0.31 1.17 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.40 4.06 8.34 -40.82 -0.34 3.72 16 34 H 0.39 5.79 8.62 -40.82 -0.35 5.44 16 35 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.02 0.49 7.75 -51.93 -0.40 0.09 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 40 H 0.12 1.87 8.04 -52.49 -0.42 1.45 16 41 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 42 H 0.11 1.14 8.06 -52.49 -0.42 0.72 16 43 H 0.11 1.19 8.06 -52.48 -0.42 0.77 16 44 H 0.12 1.52 7.72 -52.49 -0.41 1.12 16 45 H 0.09 0.54 7.85 -51.93 -0.41 0.13 16 46 H 0.10 0.42 7.90 -51.93 -0.41 0.01 16 47 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.07 0.32 8.14 -51.92 -0.42 -0.10 16 49 H 0.41 3.77 8.96 -40.82 -0.37 3.40 16 LS Contribution 401.66 15.07 6.05 6.05 Total: -1.00 -38.58 401.66 -11.14 -49.72 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -7.57 Total: 11.48 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -4.02 Total: -4.16 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: -0.13 Total: -57.08 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.45 Total: -22.76 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -38.58 -11.14 -49.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895040607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.075 kcal (2) G-P(sol) polarization free energy of solvation -38.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.58 seconds