Wall clock time and date at job start Wed Apr 1 2020 06:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 110.65876 * 2 1 4 4 N 1.46901 * 109.46882 * 56.80624 * 3 2 1 5 5 C 1.54612 * 110.73923 * 236.80950 * 2 1 3 6 6 C 1.54008 * 105.04587 * 263.51230 * 5 2 1 7 7 N 1.47491 * 107.08199 * 1.30545 * 6 5 2 8 8 C 1.34780 * 127.03184 * 154.51556 * 7 6 5 9 9 O 1.21359 * 119.99757 * 180.02562 * 8 7 6 10 10 C 1.49353 * 119.99822 * 0.02562 * 8 7 6 11 11 O 1.21367 * 120.00227 * 359.97438 * 10 8 7 12 12 N 1.34775 * 119.99452 * 180.02562 * 10 8 7 13 13 C 1.39729 * 120.00003 * 185.28026 * 12 10 8 14 14 C 1.38927 * 120.07293 * 33.34123 * 13 12 10 15 15 C 1.38095 * 119.92120 * 179.97438 * 14 13 12 16 16 C 1.38290 * 120.07658 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.92542 * 180.02562 * 16 15 14 18 18 C 1.50707 * 109.46776 * 89.99863 * 17 16 15 19 19 H 1.07994 * 120.00243 * 0.02562 * 18 17 16 20 20 C 1.37874 * 119.99949 * 179.97438 * 18 17 16 21 21 N 1.31522 * 120.00063 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00070 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47312 * 90.00082 * 22 20 18 24 24 H 1.48508 * 109.46962 * 210.00218 * 22 20 18 25 25 H 1.48500 * 109.47209 * 329.99809 * 22 20 18 26 26 C 1.38294 * 120.15418 * 0.02562 * 16 15 14 27 27 C 1.38095 * 120.07317 * 359.97438 * 26 16 15 28 28 C 1.48121 * 105.93161 * 334.78276 * 7 6 5 29 29 H 1.08995 * 109.47270 * 183.18861 * 1 2 3 30 30 H 1.09001 * 109.47044 * 303.19494 * 1 2 3 31 31 H 1.09003 * 109.47130 * 63.18843 * 1 2 3 32 32 H 1.08994 * 109.47252 * 176.80156 * 3 2 1 33 33 H 1.08999 * 109.47137 * 296.81127 * 3 2 1 34 34 H 1.00899 * 110.99957 * 56.04470 * 4 3 2 35 35 H 1.00898 * 111.00078 * 179.97438 * 4 3 2 36 36 H 1.09003 * 110.33030 * 144.62230 * 5 2 1 37 37 H 1.08995 * 110.41627 * 22.44777 * 5 2 1 38 38 H 1.08995 * 109.91632 * 241.94675 * 6 5 2 39 39 H 1.08999 * 109.91472 * 120.66672 * 6 5 2 40 40 H 0.96997 * 120.00271 * 5.27511 * 12 10 8 41 41 H 1.08001 * 120.04343 * 359.95266 * 14 13 12 42 42 H 1.08001 * 119.96086 * 179.71999 * 15 14 13 43 43 H 1.08997 * 109.47632 * 210.00096 * 17 16 15 44 44 H 1.09004 * 109.46962 * 330.00528 * 17 16 15 45 45 H 0.96994 * 120.00337 * 180.02562 * 21 20 18 46 46 H 1.07999 * 119.96408 * 180.02562 * 26 16 15 47 47 H 1.08001 * 120.03869 * 180.02562 * 27 26 16 48 48 H 1.08994 * 110.65833 * 157.50730 * 28 7 6 49 49 H 1.08998 * 110.65839 * 280.62316 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0698 1.4316 0.0000 4 7 1.5330 2.1573 1.1590 5 6 2.0775 -0.7915 -1.2100 6 6 2.3763 -2.2003 -0.6642 7 7 1.9871 -2.2052 0.7585 8 6 1.6220 -3.2723 1.4965 9 8 1.3246 -3.1292 2.6643 10 6 1.5835 -4.6307 0.8770 11 8 1.8805 -4.7737 -0.2910 12 7 1.2179 -5.6976 1.6149 13 6 1.2874 -6.9818 1.0687 14 6 2.2856 -7.2966 0.1551 15 6 2.3517 -8.5670 -0.3824 16 6 1.4261 -9.5253 -0.0119 17 6 1.5018 -10.9107 -0.6002 18 6 2.3744 -11.7787 0.2695 19 1 2.8283 -11.3684 1.1594 20 6 2.5923 -13.0970 -0.0703 21 7 2.0391 -13.5970 -1.1537 22 14 3.6733 -14.1731 1.0080 23 1 2.8378 -14.8364 2.0411 24 1 4.3369 -15.2047 0.1708 25 1 4.7045 -13.3339 1.6693 26 6 0.4312 -9.2154 0.8973 27 6 0.3592 -7.9470 1.4387 28 6 2.0732 -0.7966 1.2084 29 1 -0.3633 -1.0260 0.0572 30 1 -0.3633 0.5626 0.8600 31 1 -0.3633 0.4635 -0.9172 32 1 3.1580 1.4096 0.0573 33 1 1.7643 1.9351 -0.9172 34 1 1.7479 1.6749 2.0188 35 1 1.8754 3.1061 1.1818 36 1 2.9910 -0.3286 -1.5834 37 1 1.3293 -0.8428 -2.0009 38 1 3.4402 -2.4172 -0.7587 39 1 1.7936 -2.9416 -1.2110 40 1 0.9066 -5.5740 2.5252 41 1 3.0088 -6.5487 -0.1347 42 1 3.1247 -8.8111 -1.0961 43 1 0.5007 -11.3386 -0.6524 44 1 1.9267 -10.8571 -1.6025 45 1 2.1920 -14.5245 -1.3926 46 1 -0.2898 -9.9663 1.1848 47 1 -0.4177 -7.7057 2.1490 48 1 1.4488 -0.6347 2.0870 49 1 3.1076 -0.5213 1.4143 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000927801165.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:27:26 Heat of formation + Delta-G solvation = -40.420406 kcal Electronic energy + Delta-G solvation = -29460.821141 eV Core-core repulsion = 25387.533080 eV Total energy + Delta-G solvation = -4073.288062 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -41.26014 -39.99508 -38.62140 -37.93352 -35.60709 -34.82655 -33.04095 -32.14614 -30.60148 -30.38375 -29.86940 -27.89448 -26.89106 -25.97210 -24.30627 -23.19532 -22.51019 -22.36079 -20.44360 -19.91050 -19.61954 -18.20961 -17.25961 -16.87296 -16.74500 -16.31688 -15.93889 -15.61920 -15.40012 -15.07608 -14.98223 -14.55706 -14.37895 -14.25797 -14.04960 -13.66475 -13.36386 -13.12310 -13.00196 -12.87637 -12.80160 -12.62833 -12.33758 -12.21694 -12.06535 -11.75098 -11.42332 -11.30205 -11.20527 -11.12892 -11.06242 -10.84122 -10.61078 -10.40102 -10.09754 -9.75581 -9.44437 -9.32582 -9.23200 -9.15552 -8.43726 -8.36265 -7.48332 -6.04991 -4.09227 1.07681 1.91909 1.98313 2.10510 3.04395 3.24086 3.29914 3.36297 3.40490 3.81597 4.05546 4.07900 4.21402 4.35077 4.43038 4.52196 4.67780 4.77718 4.81444 5.01241 5.18851 5.20187 5.25054 5.28910 5.37115 5.38427 5.46717 5.50525 5.57515 5.65011 5.72104 5.78649 5.85574 5.95738 6.00433 6.00467 6.12945 6.54819 6.57022 6.59340 6.74117 6.85598 6.89359 7.09954 7.13006 7.19151 7.46836 7.51186 7.63170 7.82364 7.88045 7.90632 8.30291 8.96070 9.54715 11.04594 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.029783 B = 0.001805 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.906971 B =15507.996954 C =15709.532105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.075 4.075 3 C 0.078 3.922 4 N -0.849 5.849 5 C -0.128 4.128 6 C 0.095 3.905 7 N -0.591 5.591 8 C 0.529 3.471 9 O -0.522 6.522 10 C 0.505 3.495 11 O -0.498 6.498 12 N -0.634 5.634 13 C 0.097 3.903 14 C -0.114 4.114 15 C -0.108 4.108 16 C -0.037 4.037 17 C 0.047 3.953 18 C -0.512 4.512 19 H 0.057 0.943 20 C 0.058 3.942 21 N -0.894 5.894 22 Si 0.895 3.105 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.273 1.273 26 C -0.107 4.107 27 C -0.136 4.136 28 C 0.110 3.890 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.031 0.969 33 H 0.078 0.922 34 H 0.341 0.659 35 H 0.343 0.657 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.103 0.897 40 H 0.417 0.583 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.030 0.970 44 H 0.030 0.970 45 H 0.262 0.738 46 H 0.125 0.875 47 H 0.117 0.883 48 H 0.090 0.910 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.601 31.167 2.568 31.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.076 4.076 3 C -0.053 4.053 4 N -0.379 5.379 5 C -0.167 4.167 6 C -0.027 4.027 7 N -0.325 5.325 8 C 0.312 3.688 9 O -0.398 6.398 10 C 0.286 3.714 11 O -0.373 6.373 12 N -0.280 5.280 13 C 0.005 3.995 14 C -0.134 4.134 15 C -0.126 4.126 16 C -0.038 4.038 17 C 0.010 3.990 18 C -0.550 4.550 19 H 0.076 0.924 20 C -0.143 4.143 21 N -0.532 5.532 22 Si 0.723 3.277 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.198 1.198 26 C -0.126 4.126 27 C -0.156 4.156 28 C -0.012 4.012 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.049 0.951 33 H 0.097 0.903 34 H 0.153 0.847 35 H 0.156 0.844 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.121 0.879 40 H 0.254 0.746 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.048 0.952 44 H 0.048 0.952 45 H 0.072 0.928 46 H 0.143 0.857 47 H 0.135 0.865 48 H 0.109 0.891 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.276 30.795 1.984 30.885 hybrid contribution 1.542 -0.527 1.292 2.080 sum 0.266 30.268 3.276 30.446 Atomic orbital electron populations 1.21664 0.92435 1.01513 1.02806 1.21678 0.97478 0.93862 0.94615 1.21748 0.96011 0.92629 0.94909 1.58699 1.67190 1.06457 1.05582 1.22688 1.02078 0.94321 0.97567 1.22464 1.01568 0.98357 0.80321 1.48434 1.64661 1.06764 1.12618 1.19718 0.78377 0.84832 0.85876 1.90774 1.47886 1.85389 1.15731 1.19965 0.79462 0.85421 0.86542 1.90747 1.46003 1.85204 1.15306 1.43031 1.63335 1.04320 1.17342 1.17501 0.97962 0.83199 1.00837 1.20967 0.97228 0.97124 0.98068 1.20991 0.99328 0.91848 1.00449 1.20774 0.91935 0.97457 0.93593 1.18375 0.98180 0.86207 0.96241 1.21060 1.29656 0.94937 1.09383 0.92425 1.25012 0.96049 0.97986 0.95275 1.69957 1.44130 1.14706 1.24453 0.86535 0.80668 0.80185 0.80312 1.20590 1.21166 1.19819 1.20913 0.99371 0.95042 0.97274 1.20782 0.98120 0.93906 1.02747 1.22605 1.01197 0.79223 0.98141 0.93123 0.91091 0.92435 0.95085 0.90320 0.84663 0.84435 0.90260 0.89885 0.90841 0.87897 0.74587 0.85857 0.85874 0.95200 0.95186 0.92831 0.85736 0.86469 0.89135 0.90824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.90 8.32 37.16 0.31 -0.59 16 2 C -0.07 -0.44 0.74 -152.82 -0.11 -0.56 16 3 C 0.08 0.35 5.69 -3.82 -0.02 0.32 16 4 N -0.85 -3.66 8.76 -10.37 -0.09 -3.75 16 5 C -0.13 -0.74 6.09 -25.36 -0.15 -0.90 16 6 C 0.10 0.81 6.18 -2.97 -0.02 0.79 16 7 N -0.59 -5.88 3.19 -170.52 -0.54 -6.42 16 8 C 0.53 6.62 7.95 -11.63 -0.09 6.53 16 9 O -0.52 -7.35 16.69 5.49 0.09 -7.26 16 10 C 0.50 6.98 7.60 -11.63 -0.09 6.89 16 11 O -0.50 -7.63 11.58 5.48 0.06 -7.56 16 12 N -0.63 -8.76 5.32 -10.30 -0.05 -8.81 16 13 C 0.10 1.59 6.28 -83.75 -0.53 1.07 16 14 C -0.11 -2.04 8.66 -39.38 -0.34 -2.38 16 15 C -0.11 -2.13 9.69 -39.61 -0.38 -2.52 16 16 C -0.04 -0.80 5.07 -104.58 -0.53 -1.33 16 17 C 0.05 1.19 5.10 -29.03 -0.15 1.04 16 18 C -0.51 -14.21 9.09 -34.44 -0.31 -14.52 16 19 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -26.22 13.29 55.43 0.74 -25.49 16 22 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 26 C -0.11 -2.04 9.69 -39.61 -0.38 -2.42 16 27 C -0.14 -2.21 9.96 -39.38 -0.39 -2.60 16 28 C 0.11 0.82 5.19 -2.31 -0.01 0.81 16 29 H 0.05 0.44 8.07 -51.93 -0.42 0.02 16 30 H 0.07 0.54 7.50 -51.93 -0.39 0.15 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.03 0.12 8.11 -51.93 -0.42 -0.30 16 33 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.34 1.36 8.15 -39.29 -0.32 1.04 16 35 H 0.34 0.98 9.08 -39.29 -0.36 0.62 16 36 H 0.08 0.34 7.85 -51.93 -0.41 -0.06 16 37 H 0.08 0.46 7.87 -51.93 -0.41 0.06 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.10 1.06 6.15 -51.93 -0.32 0.74 16 40 H 0.42 4.91 8.30 -40.82 -0.34 4.57 16 41 H 0.12 2.12 6.42 -52.49 -0.34 1.78 16 42 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 43 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 44 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 45 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 46 H 0.12 2.26 8.06 -52.49 -0.42 1.83 16 47 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 48 H 0.09 0.74 7.65 -51.93 -0.40 0.35 16 49 H 0.07 0.47 8.02 -51.93 -0.42 0.05 16 LS Contribution 400.42 15.07 6.03 6.03 Total: -1.00 -31.92 400.42 -9.54 -41.46 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -7.45 Total: 4.19 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -3.31 Total: -8.81 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: 0.05 Total: -44.47 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: 0.16 Total: -14.83 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.92 -9.54 -41.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927801165.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.045 kcal (2) G-P(sol) polarization free energy of solvation -31.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds