Wall clock time and date at job start Wed Apr 1 2020 06:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34781 * 119.99868 * 2 1 4 4 O 1.21281 * 119.99962 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00163 * 179.97438 * 3 2 1 6 6 C 1.53003 * 110.88485 * 56.11563 * 5 3 2 7 7 C 1.55148 * 111.00624 * 179.97438 * 5 3 2 8 8 C 1.54325 * 102.94337 * 82.61112 * 7 5 3 9 9 N 1.47028 * 107.26851 * 22.19141 * 8 7 5 10 10 C 1.34774 * 125.64592 * 181.02492 * 9 8 7 11 11 O 1.21588 * 120.00093 * 180.02562 * 10 9 8 12 12 N 1.34778 * 120.00227 * 0.02562 * 10 9 8 13 13 C 1.39954 * 120.00053 * 184.64051 * 12 10 9 14 14 C 1.38865 * 120.06932 * 324.66305 * 13 12 10 15 15 C 1.38115 * 119.92773 * 179.74034 * 14 13 12 16 16 C 1.38285 * 120.07017 * 0.50990 * 15 14 13 17 17 C 1.50695 * 119.92890 * 179.74469 * 16 15 14 18 18 C 1.50701 * 109.47116 * 270.02319 * 17 16 15 19 19 H 1.08011 * 119.99801 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00427 * 180.02562 * 18 17 16 21 21 N 1.31513 * 119.99522 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00332 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47088 * 89.99466 * 22 20 18 24 24 H 1.48497 * 109.47425 * 209.99390 * 22 20 18 25 25 H 1.48503 * 109.47127 * 329.99995 * 22 20 18 26 26 C 1.38285 * 120.13905 * 359.76667 * 16 15 14 27 27 C 1.38118 * 120.07035 * 359.97438 * 26 16 15 28 28 C 1.47416 * 108.70432 * 1.28955 * 9 8 7 29 29 H 1.09002 * 109.47235 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47260 * 299.99660 * 1 2 3 31 31 H 1.08998 * 109.47473 * 60.00134 * 1 2 3 32 32 H 0.96996 * 120.00535 * 179.97438 * 2 1 3 33 33 H 1.09001 * 109.47040 * 183.88323 * 6 5 3 34 34 H 1.08994 * 109.47430 * 303.88509 * 6 5 3 35 35 H 1.08996 * 109.46996 * 63.88606 * 6 5 3 36 36 H 1.09001 * 110.72503 * 324.25073 * 7 5 3 37 37 H 1.09006 * 110.72401 * 200.97276 * 7 5 3 38 38 H 1.09002 * 109.88147 * 262.78106 * 8 7 5 39 39 H 1.08999 * 109.88987 * 141.61070 * 8 7 5 40 40 H 0.96995 * 120.00281 * 4.63943 * 12 10 9 41 41 H 1.08002 * 120.03718 * 359.97438 * 14 13 12 42 42 H 1.07997 * 119.96744 * 180.27897 * 15 14 13 43 43 H 1.08993 * 109.47402 * 30.02218 * 17 16 15 44 44 H 1.09002 * 109.47027 * 150.02942 * 17 16 15 45 45 H 0.96998 * 119.99396 * 180.02562 * 21 20 18 46 46 H 1.07988 * 119.96320 * 179.97438 * 26 16 15 47 47 H 1.07992 * 120.03597 * 179.97438 * 27 26 16 48 48 H 1.09006 * 110.36598 * 94.47983 * 28 9 8 49 49 H 1.08994 * 110.37017 * 216.80333 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5324 2.2176 -0.0005 5 6 3.6458 1.1673 0.0006 6 6 4.1918 0.3701 -1.1857 7 6 4.2019 2.6157 -0.0002 8 6 4.1446 3.0088 1.4911 9 7 4.1302 1.7623 2.2707 10 6 4.0637 1.6769 3.6141 11 8 4.0587 0.5877 4.1545 12 7 4.0028 2.7987 4.3586 13 6 4.0317 2.7142 5.7552 14 6 3.4156 1.6503 6.4008 15 6 3.4506 1.5669 7.7790 16 6 4.0892 2.5470 8.5165 17 6 4.1205 2.4558 10.0203 18 6 2.9182 3.1624 10.5915 19 1 2.2027 3.6303 9.9314 20 6 2.7315 3.2117 11.9567 21 7 3.6025 2.6415 12.7604 22 14 1.2409 4.0869 12.6647 23 1 0.1176 3.1243 12.7956 24 1 1.5789 4.6379 14.0016 25 1 0.8408 5.1941 11.7596 26 6 4.6988 3.6107 7.8768 27 6 4.6719 3.6970 6.4986 28 6 4.2069 0.6217 1.3400 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.9500 -0.8400 0.0004 33 1 5.2792 0.3269 -1.1249 34 1 3.7861 -0.6412 -1.1615 35 1 3.8990 0.8568 -2.1161 36 1 3.5680 3.2720 -0.5965 37 1 5.2290 2.6344 -0.3647 38 1 3.2379 3.5804 1.6892 39 1 5.0224 3.5995 1.7528 40 1 3.9388 3.6647 3.9264 41 1 2.9128 0.8868 5.8257 42 1 2.9755 0.7374 8.2815 43 1 4.1033 1.4084 10.3213 44 1 5.0300 2.9264 10.3940 45 1 3.4709 2.6758 13.7208 46 1 5.1964 4.3747 8.4555 47 1 5.1478 4.5282 5.9997 48 1 5.2415 0.3006 1.2179 49 1 3.5927 -0.2037 1.6999 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932568255.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:39:51 Heat of formation + Delta-G solvation = -37.713722 kcal Electronic energy + Delta-G solvation = -29808.582885 eV Core-core repulsion = 25735.412194 eV Total energy + Delta-G solvation = -4073.170691 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.27883 -40.10571 -38.49656 -37.35324 -35.10838 -34.81107 -33.59852 -32.82588 -30.40926 -30.26200 -30.06154 -27.44119 -27.33584 -26.10734 -23.98325 -22.93787 -22.68911 -22.24539 -20.63206 -20.10885 -19.74088 -18.54241 -17.73939 -16.70860 -16.33274 -16.30386 -16.25637 -15.56332 -15.43671 -14.92363 -14.80806 -14.36754 -14.17427 -14.06651 -13.84804 -13.46996 -13.25376 -13.15220 -13.02218 -12.88609 -12.80864 -12.71352 -12.65563 -12.50837 -11.95469 -11.75832 -11.66022 -11.35958 -11.32407 -11.23244 -10.80548 -10.56868 -10.37353 -10.20119 -10.09512 -9.82146 -9.56130 -9.39997 -9.22945 -8.90539 -8.38166 -8.21194 -7.30603 -5.99513 -4.03237 1.99497 2.13832 2.18858 2.41000 2.72650 3.16115 3.33503 3.39476 3.43933 3.65755 3.93230 4.03869 4.13520 4.42383 4.43767 4.62867 4.71632 4.78351 4.83876 4.98309 5.07792 5.11486 5.19913 5.27399 5.33150 5.34434 5.38357 5.41720 5.49153 5.49679 5.64927 5.65668 5.81296 5.93589 6.01677 6.13569 6.23190 6.27049 6.65007 6.74839 6.99858 7.00937 7.07980 7.23581 7.28311 7.57074 7.77529 7.79066 7.83328 7.93020 7.96549 8.37558 8.50650 9.02157 9.60196 11.10059 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019076 B = 0.002042 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.468259 B =13707.682394 C =14276.758481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.733 5.733 3 C 0.531 3.469 4 O -0.531 6.531 5 C -0.102 4.102 6 C -0.133 4.133 7 C -0.106 4.106 8 C 0.097 3.903 9 N -0.638 5.638 10 C 0.722 3.278 11 O -0.570 6.570 12 N -0.677 5.677 13 C 0.120 3.880 14 C -0.116 4.116 15 C -0.109 4.109 16 C -0.044 4.044 17 C 0.048 3.952 18 C -0.509 4.509 19 H 0.057 0.943 20 C 0.057 3.943 21 N -0.895 5.895 22 Si 0.895 3.105 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.273 1.273 26 C -0.108 4.108 27 C -0.144 4.144 28 C 0.142 3.858 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.402 0.598 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.401 0.599 41 H 0.128 0.872 42 H 0.120 0.880 43 H 0.029 0.971 44 H 0.028 0.972 45 H 0.261 0.739 46 H 0.122 0.878 47 H 0.113 0.887 48 H 0.081 0.919 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.508 -4.080 -32.835 33.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.384 5.384 3 C 0.317 3.683 4 O -0.407 6.407 5 C -0.106 4.106 6 C -0.191 4.191 7 C -0.144 4.144 8 C -0.026 4.026 9 N -0.377 5.377 10 C 0.425 3.575 11 O -0.447 6.447 12 N -0.324 5.324 13 C 0.027 3.973 14 C -0.136 4.136 15 C -0.127 4.127 16 C -0.044 4.044 17 C 0.011 3.989 18 C -0.548 4.548 19 H 0.075 0.925 20 C -0.144 4.144 21 N -0.534 5.534 22 Si 0.723 3.277 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.198 1.198 26 C -0.127 4.127 27 C -0.164 4.164 28 C 0.019 3.981 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.236 0.764 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.115 0.885 37 H 0.106 0.894 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.236 0.764 41 H 0.146 0.854 42 H 0.138 0.862 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.071 0.929 46 H 0.140 0.860 47 H 0.131 0.869 48 H 0.099 0.901 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.079 -4.156 -32.192 32.478 hybrid contribution -0.692 0.547 0.233 0.913 sum 0.387 -3.609 -31.959 32.165 Atomic orbital electron populations 1.21561 0.79220 1.02447 1.02458 1.45749 1.07969 1.08700 1.75995 1.20142 0.89121 0.83730 0.75348 1.90704 1.69993 1.31244 1.48732 1.22074 0.92266 0.98971 0.97337 1.21718 1.02096 0.99383 0.95922 1.22585 1.02027 0.94022 0.95731 1.22064 1.02086 0.87232 0.91253 1.47499 1.78709 1.07876 1.03618 1.15374 0.77924 0.84644 0.79581 1.90944 1.57300 1.26389 1.70040 1.42427 1.76844 1.08065 1.05054 1.17315 1.01343 0.98599 0.80015 1.21135 0.99609 0.98319 0.94517 1.21005 0.99730 0.99492 0.92518 1.20703 0.92728 0.92120 0.98871 1.18344 0.97828 0.98172 0.84534 1.21079 1.07638 1.34708 0.91333 0.92474 1.25018 0.96578 0.95691 0.97146 1.69962 1.35564 1.44346 1.03508 0.86542 0.82922 0.79925 0.78346 1.20622 1.21207 1.19832 1.20855 1.00605 0.98565 0.92685 1.20715 1.01716 0.99565 0.94428 1.22100 1.01458 0.89220 0.85371 0.90483 0.92060 0.92137 0.76413 0.90595 0.91696 0.91236 0.88548 0.89433 0.90881 0.91151 0.76407 0.85401 0.86157 0.95320 0.95332 0.92897 0.86025 0.86920 0.90085 0.90031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.55 10.70 59.84 0.64 1.19 16 2 N -0.73 -4.89 5.56 -67.08 -0.37 -5.26 16 3 C 0.53 4.76 6.44 -10.98 -0.07 4.69 16 4 O -0.53 -6.74 15.58 5.56 0.09 -6.66 16 5 C -0.10 -0.65 0.81 -153.39 -0.12 -0.77 16 6 C -0.13 -0.43 8.58 37.16 0.32 -0.11 16 7 C -0.11 -0.65 5.61 -24.90 -0.14 -0.79 16 8 C 0.10 0.79 5.86 -3.06 -0.02 0.77 16 9 N -0.64 -6.99 3.31 -176.10 -0.58 -7.57 16 10 C 0.72 10.88 8.33 -86.92 -0.72 10.15 16 11 O -0.57 -10.65 14.05 5.29 0.07 -10.57 16 12 N -0.68 -9.76 5.29 -14.22 -0.08 -9.84 16 13 C 0.12 2.13 6.30 -83.68 -0.53 1.60 16 14 C -0.12 -2.28 8.69 -39.39 -0.34 -2.63 16 15 C -0.11 -2.32 9.69 -39.61 -0.38 -2.71 16 16 C -0.04 -0.99 5.07 -104.59 -0.53 -1.52 16 17 C 0.05 1.27 5.10 -29.04 -0.15 1.12 16 18 C -0.51 -14.53 9.09 -34.44 -0.31 -14.85 16 19 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -26.83 13.29 55.43 0.74 -26.09 16 22 Si 0.89 21.91 29.54 -169.99 -5.02 16.88 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 26 C -0.11 -2.17 9.69 -39.61 -0.38 -2.55 16 27 C -0.14 -2.47 9.97 -39.39 -0.39 -2.87 16 28 C 0.14 1.18 5.84 -2.41 -0.01 1.16 16 29 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.40 1.61 8.06 -40.82 -0.33 1.28 16 33 H 0.08 0.17 8.07 -51.93 -0.42 -0.25 16 34 H 0.06 0.14 7.37 -51.93 -0.38 -0.25 16 35 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.10 0.65 7.41 -51.93 -0.38 0.27 16 37 H 0.09 0.35 8.04 -51.93 -0.42 -0.06 16 38 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.40 4.54 7.81 -40.82 -0.32 4.22 16 41 H 0.13 2.55 6.24 -52.49 -0.33 2.22 16 42 H 0.12 2.51 8.06 -52.49 -0.42 2.09 16 43 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 44 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 45 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.12 2.32 8.06 -52.49 -0.42 1.89 16 47 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 48 H 0.08 0.56 7.99 -51.93 -0.41 0.15 16 49 H 0.08 0.74 7.91 -51.93 -0.41 0.33 16 LS Contribution 403.30 15.07 6.08 6.08 Total: -1.00 -36.71 403.30 -9.92 -46.63 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -7.59 Total: 2.97 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -3.25 Total: -6.57 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: -0.29 Total: -48.76 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: 0.16 Total: -17.23 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -36.71 -9.92 -46.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932568255.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.913 kcal (2) G-P(sol) polarization free energy of solvation -36.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds