Wall clock time and date at job start Wed Apr 1 2020 06:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34781 * 119.99868 * 2 1 4 4 O 1.21281 * 119.99962 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00163 * 179.97438 * 3 2 1 6 6 C 1.53003 * 110.88485 * 56.11563 * 5 3 2 7 7 C 1.55148 * 111.00624 * 179.97438 * 5 3 2 8 8 C 1.54325 * 102.94337 * 82.61112 * 7 5 3 9 9 N 1.47028 * 107.26851 * 22.19141 * 8 7 5 10 10 C 1.34774 * 125.64592 * 181.02492 * 9 8 7 11 11 O 1.21588 * 120.00093 * 180.02562 * 10 9 8 12 12 N 1.34778 * 120.00227 * 0.02562 * 10 9 8 13 13 C 1.39954 * 120.00053 * 184.64051 * 12 10 9 14 14 C 1.38865 * 120.06932 * 324.66305 * 13 12 10 15 15 C 1.38115 * 119.92773 * 179.74034 * 14 13 12 16 16 C 1.38285 * 120.07017 * 0.50990 * 15 14 13 17 17 C 1.50695 * 119.92890 * 179.74469 * 16 15 14 18 18 C 1.50701 * 109.47116 * 270.02319 * 17 16 15 19 19 H 1.08011 * 119.99801 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00427 * 180.02562 * 18 17 16 21 21 N 1.31513 * 119.99522 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00332 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47088 * 89.99466 * 22 20 18 24 24 H 1.48497 * 109.47425 * 209.99390 * 22 20 18 25 25 H 1.48503 * 109.47127 * 329.99995 * 22 20 18 26 26 C 1.38285 * 120.13905 * 359.76667 * 16 15 14 27 27 C 1.38118 * 120.07035 * 359.97438 * 26 16 15 28 28 C 1.47416 * 108.70432 * 1.28955 * 9 8 7 29 29 H 1.09002 * 109.47235 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47260 * 299.99660 * 1 2 3 31 31 H 1.08998 * 109.47473 * 60.00134 * 1 2 3 32 32 H 0.96996 * 120.00535 * 179.97438 * 2 1 3 33 33 H 1.09001 * 109.47040 * 183.88323 * 6 5 3 34 34 H 1.08994 * 109.47430 * 303.88509 * 6 5 3 35 35 H 1.08996 * 109.46996 * 63.88606 * 6 5 3 36 36 H 1.09001 * 110.72503 * 324.25073 * 7 5 3 37 37 H 1.09006 * 110.72401 * 200.97276 * 7 5 3 38 38 H 1.09002 * 109.88147 * 262.78106 * 8 7 5 39 39 H 1.08999 * 109.88987 * 141.61070 * 8 7 5 40 40 H 0.96995 * 120.00281 * 4.63943 * 12 10 9 41 41 H 1.08002 * 120.03718 * 359.97438 * 14 13 12 42 42 H 1.07997 * 119.96744 * 180.27897 * 15 14 13 43 43 H 1.08993 * 109.47402 * 30.02218 * 17 16 15 44 44 H 1.09002 * 109.47027 * 150.02942 * 17 16 15 45 45 H 0.96998 * 119.99396 * 180.02562 * 21 20 18 46 46 H 1.07988 * 119.96320 * 179.97438 * 26 16 15 47 47 H 1.07992 * 120.03597 * 179.97438 * 27 26 16 48 48 H 1.09006 * 110.36598 * 94.47983 * 28 9 8 49 49 H 1.08994 * 110.37017 * 216.80333 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5324 2.2176 -0.0005 5 6 3.6458 1.1673 0.0006 6 6 4.1918 0.3701 -1.1857 7 6 4.2019 2.6157 -0.0002 8 6 4.1446 3.0088 1.4911 9 7 4.1302 1.7623 2.2707 10 6 4.0637 1.6769 3.6141 11 8 4.0587 0.5877 4.1545 12 7 4.0028 2.7987 4.3586 13 6 4.0317 2.7142 5.7552 14 6 3.4156 1.6503 6.4008 15 6 3.4506 1.5669 7.7790 16 6 4.0892 2.5470 8.5165 17 6 4.1205 2.4558 10.0203 18 6 2.9182 3.1624 10.5915 19 1 2.2027 3.6303 9.9314 20 6 2.7315 3.2117 11.9567 21 7 3.6025 2.6415 12.7604 22 14 1.2409 4.0869 12.6647 23 1 0.1176 3.1243 12.7956 24 1 1.5789 4.6379 14.0016 25 1 0.8408 5.1941 11.7596 26 6 4.6988 3.6107 7.8768 27 6 4.6719 3.6970 6.4986 28 6 4.2069 0.6217 1.3400 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.9500 -0.8400 0.0004 33 1 5.2792 0.3269 -1.1249 34 1 3.7861 -0.6412 -1.1615 35 1 3.8990 0.8568 -2.1161 36 1 3.5680 3.2720 -0.5965 37 1 5.2290 2.6344 -0.3647 38 1 3.2379 3.5804 1.6892 39 1 5.0224 3.5995 1.7528 40 1 3.9388 3.6647 3.9264 41 1 2.9128 0.8868 5.8257 42 1 2.9755 0.7374 8.2815 43 1 4.1033 1.4084 10.3213 44 1 5.0300 2.9264 10.3940 45 1 3.4709 2.6758 13.7208 46 1 5.1964 4.3747 8.4555 47 1 5.1478 4.5282 5.9997 48 1 5.2415 0.3006 1.2179 49 1 3.5927 -0.2037 1.6999 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932568255.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:39:50 Heat of formation + Delta-G solvation = -62.635301 kcal Electronic energy + Delta-G solvation = -29809.663566 eV Core-core repulsion = 25735.412194 eV Total energy + Delta-G solvation = -4074.251372 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.11879 -41.15575 -39.79063 -38.30597 -36.29443 -35.76092 -35.05415 -34.14217 -32.08552 -31.77719 -30.76765 -28.73136 -27.90308 -27.29685 -25.22402 -24.34641 -23.76365 -23.29755 -22.13205 -20.98113 -20.72199 -19.53072 -18.68047 -18.49266 -17.70719 -17.20461 -16.97578 -16.89269 -16.47351 -16.24483 -15.93317 -15.81475 -15.47088 -14.73603 -14.60486 -14.56360 -14.51806 -14.27966 -14.09002 -13.94506 -13.81630 -13.63776 -13.45447 -13.27359 -13.20522 -13.17147 -13.12910 -12.63060 -12.45905 -12.29536 -12.16780 -12.07789 -11.79192 -11.70035 -11.55295 -11.26981 -10.91700 -10.86971 -10.59920 -10.19086 -9.81031 -9.76930 -8.85785 -8.17923 -6.32381 0.46673 0.56948 1.38777 1.39866 1.40847 1.52229 1.52372 1.96186 2.20273 2.40303 2.79537 3.00309 3.11148 3.25123 3.46974 3.64730 3.97065 4.04407 4.15322 4.21211 4.30089 4.38109 4.38952 4.43809 4.55134 4.56723 4.63390 4.65729 4.69629 4.72061 4.84011 4.88059 4.90741 4.95177 5.11358 5.12427 5.15364 5.29830 5.33232 5.35339 5.38039 5.43343 5.48716 5.60858 5.76155 5.90220 6.08097 6.12708 6.25759 6.46132 6.74867 6.80060 7.17505 7.35642 7.36586 8.90088 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019076 B = 0.002042 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.468259 B =13707.682394 C =14276.758481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.725 5.725 3 C 0.520 3.480 4 O -0.576 6.576 5 C -0.091 4.091 6 C -0.130 4.130 7 C -0.100 4.100 8 C 0.090 3.910 9 N -0.633 5.633 10 C 0.715 3.285 11 O -0.612 6.612 12 N -0.668 5.668 13 C 0.134 3.866 14 C -0.123 4.123 15 C -0.119 4.119 16 C -0.074 4.074 17 C 0.058 3.942 18 C -0.527 4.527 19 H 0.054 0.946 20 C 0.003 3.997 21 N -0.930 5.930 22 Si 0.966 3.034 23 H -0.274 1.274 24 H -0.278 1.278 25 H -0.265 1.265 26 C -0.111 4.111 27 C -0.127 4.127 28 C 0.135 3.865 29 H 0.107 0.893 30 H 0.037 0.963 31 H 0.057 0.943 32 H 0.416 0.584 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.118 0.882 38 H 0.059 0.941 39 H 0.093 0.907 40 H 0.419 0.581 41 H 0.123 0.877 42 H 0.110 0.890 43 H -0.001 1.001 44 H 0.008 0.992 45 H 0.265 0.735 46 H 0.129 0.871 47 H 0.158 0.842 48 H 0.103 0.897 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.000 -3.097 -35.835 36.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.377 5.377 3 C 0.307 3.693 4 O -0.455 6.455 5 C -0.095 4.095 6 C -0.187 4.187 7 C -0.138 4.138 8 C -0.032 4.032 9 N -0.370 5.370 10 C 0.417 3.583 11 O -0.492 6.492 12 N -0.316 5.316 13 C 0.040 3.960 14 C -0.144 4.144 15 C -0.138 4.138 16 C -0.075 4.075 17 C 0.021 3.979 18 C -0.564 4.564 19 H 0.072 0.928 20 C -0.195 4.195 21 N -0.570 5.570 22 Si 0.790 3.210 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.189 1.189 26 C -0.130 4.130 27 C -0.147 4.147 28 C 0.013 3.987 29 H 0.126 0.874 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.252 0.748 33 H 0.113 0.887 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.108 0.892 37 H 0.136 0.864 38 H 0.078 0.922 39 H 0.111 0.889 40 H 0.257 0.743 41 H 0.141 0.859 42 H 0.128 0.872 43 H 0.018 0.982 44 H 0.027 0.973 45 H 0.074 0.926 46 H 0.147 0.853 47 H 0.176 0.824 48 H 0.121 0.879 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.580 -3.183 -35.272 35.451 hybrid contribution -0.843 0.185 1.014 1.331 sum 0.738 -2.999 -34.259 34.397 Atomic orbital electron populations 1.21623 0.79137 1.04072 1.01132 1.45779 1.08264 1.08962 1.74670 1.20739 0.90429 0.83534 0.74577 1.90682 1.71096 1.32788 1.50952 1.22055 0.90283 0.99678 0.97493 1.21765 1.03184 0.99481 0.94296 1.22638 1.03636 0.93500 0.94031 1.22294 1.02440 0.86138 0.92318 1.47565 1.76918 1.10043 1.02522 1.15569 0.77865 0.83977 0.80851 1.90919 1.59166 1.27843 1.71298 1.42270 1.76588 1.09078 1.03693 1.17390 0.99474 0.97464 0.81692 1.21101 1.00332 0.99280 0.93638 1.20916 1.00260 0.99247 0.93388 1.20414 0.95894 0.94458 0.96724 1.18084 0.96414 0.95825 0.87579 1.21380 1.08274 1.34937 0.91858 0.92762 1.25942 0.99710 0.96367 0.97507 1.70085 1.37505 1.45498 1.03933 0.85432 0.78946 0.78857 0.77736 1.19943 1.20304 1.18921 1.20969 1.00131 0.97714 0.94172 1.20998 1.00373 1.00233 0.93103 1.22370 1.02651 0.88217 0.85503 0.87412 0.94460 0.92395 0.74771 0.88737 0.90449 0.90820 0.89175 0.86401 0.92245 0.88926 0.74318 0.85922 0.87193 0.98222 0.97323 0.92575 0.85301 0.82427 0.87948 0.91243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.01 10.70 127.77 1.37 2.38 16 2 N -0.73 -8.85 5.56 -484.52 -2.70 -11.54 16 3 C 0.52 8.76 6.44 87.66 0.56 9.33 16 4 O -0.58 -14.55 15.58 -3.03 -0.05 -14.60 16 5 C -0.09 -0.93 0.81 -51.46 -0.04 -0.97 16 6 C -0.13 -0.38 8.58 71.98 0.62 0.24 16 7 C -0.10 -0.93 5.61 31.78 0.18 -0.76 16 8 C 0.09 1.25 5.86 86.73 0.51 1.75 16 9 N -0.63 -12.68 3.31 -829.31 -2.74 -15.42 16 10 C 0.71 20.66 8.33 179.05 1.49 22.15 16 11 O -0.61 -22.78 14.05 -3.99 -0.06 -22.84 16 12 N -0.67 -17.95 5.29 -317.17 -1.68 -19.63 16 13 C 0.13 4.56 6.30 38.15 0.24 4.80 16 14 C -0.12 -4.93 8.69 22.39 0.19 -4.73 16 15 C -0.12 -5.32 9.69 22.25 0.22 -5.10 16 16 C -0.07 -3.48 5.07 -19.84 -0.10 -3.58 16 17 C 0.06 3.23 5.10 29.10 0.15 3.38 16 18 C -0.53 -30.97 9.09 25.60 0.23 -30.74 16 19 H 0.05 3.15 7.74 -2.91 -0.02 3.12 16 20 C 0.00 0.16 5.46 84.65 0.46 0.62 16 21 N -0.93 -57.25 13.29 21.45 0.28 -56.96 16 22 Si 0.97 45.36 29.54 68.60 2.03 47.38 16 23 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 25 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 26 C -0.11 -4.40 9.69 22.25 0.22 -4.18 16 27 C -0.13 -4.06 9.97 22.39 0.22 -3.84 16 28 C 0.14 1.94 5.84 86.94 0.51 2.45 16 29 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.42 2.57 8.06 -92.71 -0.75 1.83 16 33 H 0.09 -0.01 8.07 -2.39 -0.02 -0.03 16 34 H 0.08 0.05 7.37 -2.39 -0.02 0.04 16 35 H 0.07 0.22 8.14 -2.39 -0.02 0.20 16 36 H 0.09 1.04 7.41 -2.39 -0.02 1.02 16 37 H 0.12 0.42 8.04 -2.38 -0.02 0.40 16 38 H 0.06 1.01 8.13 -2.39 -0.02 0.99 16 39 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.42 8.28 7.81 -92.71 -0.72 7.55 16 41 H 0.12 5.04 6.24 -2.91 -0.02 5.02 16 42 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 43 H 0.00 -0.03 8.08 -2.39 -0.02 -0.05 16 44 H 0.01 0.49 8.08 -2.39 -0.02 0.47 16 45 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 46 H 0.13 4.83 8.06 -2.92 -0.02 4.81 16 47 H 0.16 3.65 8.06 -2.91 -0.02 3.63 16 48 H 0.10 1.09 7.99 -2.38 -0.02 1.07 16 49 H 0.07 1.18 7.91 -2.39 -0.02 1.16 16 Total: -1.00 -83.56 403.30 1.62 -81.94 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -0.50 Total: 18.47 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: 7.03 Total: -6.80 kcal Atomic # 7 Polarization: -96.72 SS G_CDS: -6.83 Total: -103.55 kcal Atomic # 8 Polarization: -37.33 SS G_CDS: -0.10 Total: -37.44 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -83.56 1.62 -81.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932568255.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.302 kcal (2) G-P(sol) polarization free energy of solvation -83.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds