Wall clock time and date at job start Wed Apr 1 2020 03:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38352 * 120.35114 * 2 1 4 4 N 1.31929 * 121.08085 * 179.97438 * 3 2 1 5 5 C 1.31694 * 121.88148 * 359.97438 * 4 3 2 6 6 C 1.39520 * 120.56424 * 0.02562 * 5 4 3 7 7 C 1.47840 * 120.55716 * 180.02562 * 6 5 4 8 8 O 1.21552 * 120.00164 * 328.26988 * 7 6 5 9 9 N 1.34780 * 119.99791 * 148.27464 * 7 6 5 10 10 C 1.47154 * 120.98803 * 354.34006 * 9 7 6 11 11 C 1.53294 * 108.37356 * 230.59832 * 10 9 7 12 12 O 1.42964 * 109.23304 * 307.65588 * 11 10 9 13 13 C 1.42902 * 114.21222 * 62.48554 * 12 11 10 14 14 C 1.52985 * 109.56603 * 57.47918 * 13 12 11 15 15 C 1.53194 * 109.35031 * 59.05604 * 14 13 12 16 16 N 1.46929 * 108.77676 * 54.57068 * 15 14 13 17 17 C 1.36931 * 120.64471 * 126.30056 * 16 15 14 18 18 H 1.08005 * 119.99947 * 331.41592 * 17 16 15 19 19 C 1.38810 * 120.00241 * 151.41907 * 17 16 15 20 20 N 1.31623 * 120.00009 * 339.18889 * 19 17 16 21 21 Si 1.86803 * 120.00298 * 159.19526 * 19 17 16 22 22 H 1.48495 * 109.47471 * 179.97438 * 21 19 17 23 23 H 1.48506 * 109.46649 * 299.99998 * 21 19 17 24 24 H 1.48502 * 109.47131 * 59.99408 * 21 19 17 25 25 C 1.46935 * 118.71139 * 306.57163 * 16 15 14 26 26 C 1.52759 * 109.00137 * 53.38911 * 25 16 15 27 27 C 1.47156 * 120.98481 * 174.34327 * 9 7 6 28 28 C 1.38367 * 120.34822 * 180.26178 * 2 1 3 29 29 H 1.09005 * 109.47085 * 89.99807 * 1 2 3 30 30 H 1.09003 * 109.47292 * 210.00080 * 1 2 3 31 31 H 1.08999 * 109.47261 * 330.00098 * 1 2 3 32 32 H 1.08000 * 119.45663 * 359.95549 * 3 2 1 33 33 H 1.07993 * 119.71684 * 180.02562 * 5 4 3 34 34 H 1.09000 * 109.67794 * 110.88315 * 10 9 7 35 35 H 1.08995 * 109.68194 * 350.31856 * 10 9 7 36 36 H 1.08993 * 109.51124 * 187.72348 * 11 10 9 37 37 H 1.09002 * 109.50703 * 67.58052 * 11 10 9 38 38 H 1.09002 * 109.49134 * 299.09522 * 14 13 12 39 39 H 1.08993 * 109.50991 * 179.03269 * 14 13 12 40 40 H 1.09007 * 109.58589 * 294.78338 * 15 14 13 41 41 H 1.08997 * 109.70367 * 174.42886 * 15 14 13 42 42 H 0.96999 * 119.99519 * 354.01189 * 20 19 17 43 43 H 1.08994 * 109.58699 * 173.22036 * 25 16 15 44 44 H 1.08997 * 109.58721 * 293.65266 * 25 16 15 45 45 H 1.08994 * 109.56150 * 185.59021 * 26 25 16 46 46 H 1.08994 * 109.37591 * 65.56808 * 26 25 16 47 47 H 1.08998 * 109.67722 * 9.78869 * 27 9 7 48 48 H 1.08994 * 109.67785 * 249.24315 * 27 9 7 49 49 H 1.07997 * 120.85466 * 0.04598 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2060 1.1939 0.0000 4 7 3.5252 1.2107 0.0005 5 6 4.2350 0.1014 0.0015 6 6 3.6054 -1.1437 0.0016 7 6 4.4023 -2.3889 0.0033 8 8 5.4846 -2.4186 -0.5490 9 7 3.9285 -3.4913 0.6172 10 6 2.6811 -3.4475 1.3967 11 6 2.9489 -4.0684 2.7724 12 8 3.5439 -5.3568 2.5998 13 6 4.8139 -5.3329 1.9451 14 6 5.7782 -4.4416 2.7299 15 6 5.9262 -4.9850 4.1546 16 7 6.3300 -6.3959 4.0831 17 6 7.4407 -6.8387 4.7505 18 1 8.2627 -6.1637 4.9384 19 6 7.5103 -8.1550 5.1855 20 7 6.4074 -8.8573 5.3370 21 14 9.1691 -8.9299 5.5561 22 1 8.9719 -10.3328 6.0011 23 1 10.0085 -8.9120 4.3311 24 1 9.8458 -8.1605 6.6310 25 6 5.5224 -7.3213 3.2767 26 6 5.3759 -6.7538 1.8660 27 6 4.6435 -4.7744 0.5281 28 6 2.2060 -1.1941 -0.0055 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6629 2.1274 -0.0007 33 1 5.3135 0.1559 0.0023 34 1 1.9065 -4.0158 0.8819 35 1 2.3597 -2.4130 1.5171 36 1 2.0090 -4.1711 3.3146 37 1 3.6267 -3.4269 3.3356 38 1 5.3856 -3.4254 2.7672 39 1 6.7515 -4.4377 2.2392 40 1 4.9732 -4.9037 4.6775 41 1 6.6858 -4.4141 4.6886 42 1 5.5426 -8.4313 5.2291 43 1 6.0167 -8.2915 3.2292 44 1 4.5360 -7.4329 3.7269 45 1 4.6973 -7.3817 1.2887 46 1 6.3521 -6.7322 1.3817 47 1 5.6224 -4.6184 0.0749 48 1 4.0664 -5.4749 -0.0756 49 1 1.6858 -2.1404 -0.0105 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949060816.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:37 Heat of formation + Delta-G solvation = -2.106605 kcal Electronic energy + Delta-G solvation = -31669.449684 eV Core-core repulsion = 27597.823033 eV Total energy + Delta-G solvation = -4071.626651 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.37457 -40.21335 -38.69671 -36.53425 -35.00213 -34.03408 -33.37625 -32.45290 -31.18659 -29.85398 -28.91822 -27.80165 -27.09619 -24.83000 -24.43590 -23.31030 -22.87193 -22.36741 -20.97837 -19.50504 -19.07634 -17.75226 -17.45154 -17.39339 -17.00207 -16.26269 -15.71528 -15.57064 -14.99465 -14.86222 -14.54730 -14.36443 -14.10142 -13.92466 -13.86318 -13.55953 -13.46831 -13.44183 -13.32884 -13.12160 -13.03393 -12.38922 -12.33070 -12.06317 -12.00509 -11.76908 -11.55403 -10.99449 -10.68816 -10.58821 -10.48224 -10.45512 -10.33212 -10.13160 -10.05228 -9.96144 -9.71111 -9.52765 -9.39098 -9.21269 -8.57734 -8.37636 -6.83159 -5.99931 -3.21558 0.30486 0.71521 2.45479 2.62364 3.36759 3.51635 3.54435 3.72648 3.83704 3.87282 4.15355 4.23047 4.33090 4.47084 4.59038 4.62075 4.64678 4.74534 4.93093 4.97816 5.07173 5.08557 5.11871 5.18522 5.23749 5.31405 5.42612 5.47215 5.54591 5.57107 5.59104 5.63833 5.68043 5.75853 5.90903 6.09835 6.14979 6.19118 6.20283 6.35784 6.41879 6.49695 6.65770 6.85744 7.04694 7.09699 7.27543 7.41402 7.47456 7.84564 8.03006 8.62485 9.16359 9.88684 10.33999 11.27360 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.023588 B = 0.002643 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.782792 B =10592.836482 C =10940.840949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.146 4.146 3 C 0.118 3.882 4 N -0.482 5.482 5 C 0.151 3.849 6 C -0.176 4.176 7 C 0.564 3.436 8 O -0.528 6.528 9 N -0.603 5.603 10 C 0.059 3.941 11 C 0.043 3.957 12 O -0.357 6.357 13 C 0.118 3.882 14 C -0.152 4.152 15 C 0.155 3.845 16 N -0.598 5.598 17 C -0.346 4.346 18 H 0.054 0.946 19 C -0.026 4.026 20 N -0.921 5.921 21 Si 1.067 2.933 22 H -0.285 1.285 23 H -0.293 1.293 24 H -0.294 1.294 25 C 0.156 3.844 26 C -0.121 4.121 27 C 0.090 3.910 28 C -0.053 4.053 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.160 0.840 33 H 0.167 0.833 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.060 0.940 38 H 0.051 0.949 39 H 0.069 0.931 40 H 0.019 0.981 41 H 0.052 0.948 42 H 0.270 0.730 43 H 0.081 0.919 44 H 0.026 0.974 45 H 0.061 0.939 46 H 0.074 0.926 47 H 0.102 0.898 48 H 0.075 0.925 49 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.766 16.664 -11.627 25.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.148 4.148 3 C -0.039 4.039 4 N -0.189 5.189 5 C -0.007 4.007 6 C -0.181 4.181 7 C 0.352 3.648 8 O -0.405 6.405 9 N -0.336 5.336 10 C -0.064 4.064 11 C -0.035 4.035 12 O -0.275 6.275 13 C 0.078 3.922 14 C -0.192 4.192 15 C 0.029 3.971 16 N -0.322 5.322 17 C -0.475 4.475 18 H 0.072 0.928 19 C -0.227 4.227 20 N -0.562 5.562 21 Si 0.897 3.103 22 H -0.211 1.211 23 H -0.221 1.221 24 H -0.221 1.221 25 C 0.030 3.970 26 C -0.161 4.161 27 C -0.033 4.033 28 C -0.079 4.079 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.177 0.823 33 H 0.184 0.816 34 H 0.098 0.902 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.037 0.963 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.099 0.901 44 H 0.044 0.956 45 H 0.079 0.921 46 H 0.092 0.908 47 H 0.120 0.880 48 H 0.093 0.907 49 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -13.035 15.844 -11.394 23.468 hybrid contribution -1.197 1.038 -0.554 1.678 sum -14.232 16.882 -11.948 25.105 Atomic orbital electron populations 1.20747 0.89489 1.03579 1.02963 1.20927 0.98016 0.93726 1.02100 1.22957 0.90029 0.97729 0.93165 1.67809 1.07994 1.30763 1.12358 1.22969 1.00882 0.85869 0.90989 1.20978 0.94503 0.95595 1.07057 1.18085 0.85305 0.82606 0.78797 1.90808 1.20771 1.83812 1.45072 1.47989 1.25119 1.09791 1.50681 1.23010 0.86631 1.02872 0.93854 1.22926 0.99185 0.86868 0.94508 1.88066 1.33786 1.26528 1.79146 1.21760 0.83677 0.97643 0.89131 1.22509 0.99226 0.97430 1.00004 1.20754 0.97324 0.87010 0.92038 1.44075 1.30339 1.03476 1.54313 1.19999 0.94152 0.98826 1.34514 0.92792 1.25869 1.04457 0.95323 0.97087 1.70771 0.98405 1.40015 1.47051 0.83496 0.74528 0.76250 0.76049 1.21073 1.22066 1.22065 1.20796 0.94584 0.94663 0.86912 1.22015 0.99754 0.92425 1.01885 1.22532 0.98912 0.83089 0.98718 1.21981 0.92773 0.99207 0.93984 0.90608 0.90970 0.90781 0.82264 0.81605 0.90204 0.88329 0.87928 0.92174 0.93017 0.91184 0.96345 0.92941 0.91818 0.90094 0.95607 0.92061 0.90755 0.88016 0.90672 0.83496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.42 10.03 36.00 0.36 -0.06 16 2 C -0.15 -0.99 5.89 -104.54 -0.62 -1.61 16 3 C 0.12 0.93 10.85 -17.47 -0.19 0.74 16 4 N -0.48 -5.12 10.35 -12.91 -0.13 -5.26 16 5 C 0.15 1.70 10.77 -17.13 -0.18 1.51 16 6 C -0.18 -1.93 5.39 -104.82 -0.57 -2.50 16 7 C 0.56 7.66 7.45 -12.33 -0.09 7.57 16 8 O -0.53 -8.96 16.24 5.32 0.09 -8.88 16 9 N -0.60 -7.59 2.52 -173.41 -0.44 -8.02 16 10 C 0.06 0.57 4.92 -3.53 -0.02 0.56 16 11 C 0.04 0.52 6.60 37.31 0.25 0.76 16 12 O -0.36 -5.80 9.01 -35.23 -0.32 -6.12 16 13 C 0.12 1.96 0.68 -90.49 -0.06 1.90 16 14 C -0.15 -2.76 4.33 -26.64 -0.12 -2.87 16 15 C 0.16 3.35 6.29 -3.71 -0.02 3.33 16 16 N -0.60 -15.13 2.86 -172.57 -0.49 -15.63 16 17 C -0.35 -9.74 9.52 -15.06 -0.14 -9.89 16 18 H 0.05 1.53 7.91 -52.48 -0.42 1.12 16 19 C -0.03 -0.74 4.80 -17.43 -0.08 -0.82 16 20 N -0.92 -27.74 12.38 55.49 0.69 -27.06 16 21 Si 1.07 25.46 29.97 -169.99 -5.09 20.37 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 C 0.16 3.67 4.35 -3.93 -0.02 3.66 16 26 C -0.12 -2.26 5.09 -26.86 -0.14 -2.40 16 27 C 0.09 1.28 5.31 -3.55 -0.02 1.26 16 28 C -0.05 -0.44 7.21 -38.87 -0.28 -0.72 16 29 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.22 8.10 -51.93 -0.42 -0.20 16 31 H 0.07 0.20 8.09 -51.93 -0.42 -0.22 16 32 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 33 H 0.17 1.84 7.96 -52.49 -0.42 1.42 16 34 H 0.08 0.65 7.95 -51.93 -0.41 0.24 16 35 H 0.10 0.77 4.53 -51.93 -0.24 0.54 16 36 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.06 0.78 6.29 -51.93 -0.33 0.46 16 38 H 0.05 0.86 6.16 -51.93 -0.32 0.54 16 39 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.02 0.41 7.83 -51.93 -0.41 0.00 16 41 H 0.05 1.15 7.93 -51.93 -0.41 0.74 16 42 H 0.27 8.20 6.37 -40.82 -0.26 7.94 16 43 H 0.08 2.13 6.24 -51.93 -0.32 1.81 16 44 H 0.03 0.64 7.48 -51.93 -0.39 0.25 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 47 H 0.10 1.59 7.05 -51.93 -0.37 1.22 16 48 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 49 H 0.15 0.94 5.75 -52.49 -0.30 0.64 16 LS Contribution 376.67 15.07 5.68 5.68 Total: -1.00 -34.20 376.67 -9.15 -43.35 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -7.18 Total: 1.15 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -1.94 Total: 0.43 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: -0.38 Total: -55.97 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -0.23 Total: -14.99 kcal Atomic # 14 Polarization: 25.46 SS G_CDS: -5.09 Total: 20.37 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.20 -9.15 -43.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949060816.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.240 kcal (2) G-P(sol) polarization free energy of solvation -34.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds