Wall clock time and date at job start Wed Apr 1 2020 03:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38352 * 120.35114 * 2 1 4 4 N 1.31929 * 121.08085 * 179.97438 * 3 2 1 5 5 C 1.31694 * 121.88148 * 359.97438 * 4 3 2 6 6 C 1.39520 * 120.56424 * 0.02562 * 5 4 3 7 7 C 1.47840 * 120.55716 * 180.02562 * 6 5 4 8 8 O 1.21552 * 120.00164 * 328.26988 * 7 6 5 9 9 N 1.34780 * 119.99791 * 148.27464 * 7 6 5 10 10 C 1.47154 * 120.98803 * 354.34006 * 9 7 6 11 11 C 1.53294 * 108.37356 * 230.59832 * 10 9 7 12 12 O 1.42964 * 109.23304 * 307.65588 * 11 10 9 13 13 C 1.42902 * 114.21222 * 62.48554 * 12 11 10 14 14 C 1.52985 * 109.56603 * 57.47918 * 13 12 11 15 15 C 1.53194 * 109.35031 * 59.05604 * 14 13 12 16 16 N 1.46929 * 108.77676 * 54.57068 * 15 14 13 17 17 C 1.36931 * 120.64471 * 126.30056 * 16 15 14 18 18 H 1.08005 * 119.99947 * 331.41592 * 17 16 15 19 19 C 1.38810 * 120.00241 * 151.41907 * 17 16 15 20 20 N 1.31623 * 120.00009 * 339.18889 * 19 17 16 21 21 Si 1.86803 * 120.00298 * 159.19526 * 19 17 16 22 22 H 1.48495 * 109.47471 * 179.97438 * 21 19 17 23 23 H 1.48506 * 109.46649 * 299.99998 * 21 19 17 24 24 H 1.48502 * 109.47131 * 59.99408 * 21 19 17 25 25 C 1.46935 * 118.71139 * 306.57163 * 16 15 14 26 26 C 1.52759 * 109.00137 * 53.38911 * 25 16 15 27 27 C 1.47156 * 120.98481 * 174.34327 * 9 7 6 28 28 C 1.38367 * 120.34822 * 180.26178 * 2 1 3 29 29 H 1.09005 * 109.47085 * 89.99807 * 1 2 3 30 30 H 1.09003 * 109.47292 * 210.00080 * 1 2 3 31 31 H 1.08999 * 109.47261 * 330.00098 * 1 2 3 32 32 H 1.08000 * 119.45663 * 359.95549 * 3 2 1 33 33 H 1.07993 * 119.71684 * 180.02562 * 5 4 3 34 34 H 1.09000 * 109.67794 * 110.88315 * 10 9 7 35 35 H 1.08995 * 109.68194 * 350.31856 * 10 9 7 36 36 H 1.08993 * 109.51124 * 187.72348 * 11 10 9 37 37 H 1.09002 * 109.50703 * 67.58052 * 11 10 9 38 38 H 1.09002 * 109.49134 * 299.09522 * 14 13 12 39 39 H 1.08993 * 109.50991 * 179.03269 * 14 13 12 40 40 H 1.09007 * 109.58589 * 294.78338 * 15 14 13 41 41 H 1.08997 * 109.70367 * 174.42886 * 15 14 13 42 42 H 0.96999 * 119.99519 * 354.01189 * 20 19 17 43 43 H 1.08994 * 109.58699 * 173.22036 * 25 16 15 44 44 H 1.08997 * 109.58721 * 293.65266 * 25 16 15 45 45 H 1.08994 * 109.56150 * 185.59021 * 26 25 16 46 46 H 1.08994 * 109.37591 * 65.56808 * 26 25 16 47 47 H 1.08998 * 109.67722 * 9.78869 * 27 9 7 48 48 H 1.08994 * 109.67785 * 249.24315 * 27 9 7 49 49 H 1.07997 * 120.85466 * 0.04598 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2060 1.1939 0.0000 4 7 3.5252 1.2107 0.0005 5 6 4.2350 0.1014 0.0015 6 6 3.6054 -1.1437 0.0016 7 6 4.4023 -2.3889 0.0033 8 8 5.4846 -2.4186 -0.5490 9 7 3.9285 -3.4913 0.6172 10 6 2.6811 -3.4475 1.3967 11 6 2.9489 -4.0684 2.7724 12 8 3.5439 -5.3568 2.5998 13 6 4.8139 -5.3329 1.9451 14 6 5.7782 -4.4416 2.7299 15 6 5.9262 -4.9850 4.1546 16 7 6.3300 -6.3959 4.0831 17 6 7.4407 -6.8387 4.7505 18 1 8.2627 -6.1637 4.9384 19 6 7.5103 -8.1550 5.1855 20 7 6.4074 -8.8573 5.3370 21 14 9.1691 -8.9299 5.5561 22 1 8.9719 -10.3328 6.0011 23 1 10.0085 -8.9120 4.3311 24 1 9.8458 -8.1605 6.6310 25 6 5.5224 -7.3213 3.2767 26 6 5.3759 -6.7538 1.8660 27 6 4.6435 -4.7744 0.5281 28 6 2.2060 -1.1941 -0.0055 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6629 2.1274 -0.0007 33 1 5.3135 0.1559 0.0023 34 1 1.9065 -4.0158 0.8819 35 1 2.3597 -2.4130 1.5171 36 1 2.0090 -4.1711 3.3146 37 1 3.6267 -3.4269 3.3356 38 1 5.3856 -3.4254 2.7672 39 1 6.7515 -4.4377 2.2392 40 1 4.9732 -4.9037 4.6775 41 1 6.6858 -4.4141 4.6886 42 1 5.5426 -8.4313 5.2291 43 1 6.0167 -8.2915 3.2292 44 1 4.5360 -7.4329 3.7269 45 1 4.6973 -7.3817 1.2887 46 1 6.3521 -6.7322 1.3817 47 1 5.6224 -4.6184 0.0749 48 1 4.0664 -5.4749 -0.0756 49 1 1.6858 -2.1404 -0.0105 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949060816.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:36 Heat of formation + Delta-G solvation = -24.235199 kcal Electronic energy + Delta-G solvation = -31670.409252 eV Core-core repulsion = 27597.823033 eV Total energy + Delta-G solvation = -4072.586219 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.31630 -41.20391 -39.83276 -38.12387 -36.15476 -34.93356 -34.62097 -33.49449 -32.75737 -31.53070 -30.18975 -28.54056 -28.20746 -26.24104 -25.49381 -24.59717 -23.98106 -23.69267 -22.40874 -20.72728 -20.36011 -19.51874 -18.58333 -18.11001 -17.82532 -17.26481 -17.00662 -16.78710 -16.28945 -16.10268 -15.78126 -15.46513 -15.39733 -15.24686 -15.20927 -15.08762 -14.55707 -14.51080 -14.35960 -13.75090 -13.65879 -13.58105 -13.47217 -13.33758 -13.11135 -12.98104 -12.81856 -12.66154 -12.51429 -12.14565 -12.00858 -11.96383 -11.86771 -11.60127 -11.33676 -11.18141 -10.96694 -10.80337 -10.51558 -10.51258 -10.02182 -9.65884 -8.93968 -8.22714 -5.43912 -0.41764 0.07711 1.48447 1.57245 1.64824 1.67516 1.83932 2.62579 2.64914 2.69789 3.10296 3.23370 3.40993 3.46573 3.59121 3.65753 3.69125 3.72461 3.77687 3.85123 3.92518 4.06296 4.11433 4.20103 4.25423 4.36457 4.48168 4.49975 4.54859 4.55766 4.61416 4.72208 4.75317 4.76106 4.80723 4.84710 4.89612 4.89926 4.98504 5.10869 5.14941 5.17359 5.18799 5.24345 5.43202 5.57765 5.79992 6.09225 6.21088 6.39978 6.79093 6.84134 7.05195 7.76464 8.21199 9.00769 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.023588 B = 0.002643 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.782792 B =10592.836482 C =10940.840949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.132 4.132 3 C 0.115 3.885 4 N -0.504 5.504 5 C 0.132 3.868 6 C -0.189 4.189 7 C 0.563 3.437 8 O -0.573 6.573 9 N -0.602 5.602 10 C 0.064 3.936 11 C 0.034 3.966 12 O -0.376 6.376 13 C 0.127 3.873 14 C -0.138 4.138 15 C 0.156 3.844 16 N -0.617 5.617 17 C -0.356 4.356 18 H 0.046 0.954 19 C -0.075 4.075 20 N -0.945 5.945 21 Si 1.117 2.883 22 H -0.289 1.289 23 H -0.280 1.280 24 H -0.277 1.277 25 C 0.167 3.833 26 C -0.114 4.114 27 C 0.099 3.901 28 C -0.051 4.051 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.190 0.810 33 H 0.152 0.848 34 H 0.109 0.891 35 H 0.122 0.878 36 H 0.132 0.868 37 H 0.046 0.954 38 H 0.067 0.933 39 H 0.054 0.946 40 H 0.018 0.982 41 H 0.041 0.959 42 H 0.256 0.744 43 H 0.046 0.954 44 H 0.010 0.990 45 H 0.085 0.915 46 H 0.069 0.931 47 H 0.085 0.915 48 H 0.096 0.904 49 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.551 18.043 -12.638 28.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.133 4.133 3 C -0.043 4.043 4 N -0.212 5.212 5 C -0.026 4.026 6 C -0.195 4.195 7 C 0.353 3.647 8 O -0.453 6.453 9 N -0.334 5.334 10 C -0.058 4.058 11 C -0.043 4.043 12 O -0.295 6.295 13 C 0.087 3.913 14 C -0.177 4.177 15 C 0.030 3.970 16 N -0.342 5.342 17 C -0.486 4.486 18 H 0.064 0.936 19 C -0.271 4.271 20 N -0.587 5.587 21 Si 0.941 3.059 22 H -0.215 1.215 23 H -0.206 1.206 24 H -0.203 1.203 25 C 0.041 3.959 26 C -0.153 4.153 27 C -0.024 4.024 28 C -0.076 4.076 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.207 0.793 33 H 0.169 0.831 34 H 0.127 0.873 35 H 0.140 0.860 36 H 0.150 0.850 37 H 0.064 0.936 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.035 0.965 41 H 0.060 0.940 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.028 0.972 45 H 0.104 0.896 46 H 0.087 0.913 47 H 0.103 0.897 48 H 0.114 0.886 49 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -15.860 17.262 -12.407 26.523 hybrid contribution -0.462 0.737 -0.186 0.889 sum -16.321 17.999 -12.593 27.367 Atomic orbital electron populations 1.20862 0.86691 1.05078 1.04048 1.21281 0.99756 0.92623 0.99682 1.23565 0.89219 0.99657 0.91811 1.67804 1.09601 1.30529 1.13288 1.22831 1.00664 0.86593 0.92464 1.20770 0.95652 0.93895 1.09139 1.18497 0.84882 0.83347 0.77982 1.90781 1.22857 1.84551 1.47095 1.48048 1.25802 1.08854 1.50655 1.23224 0.85813 1.04573 0.92173 1.23235 0.99751 0.85011 0.96264 1.88034 1.33062 1.29125 1.79309 1.21481 0.83722 0.95654 0.90462 1.22312 0.99241 0.98549 0.97622 1.20800 0.96640 0.85236 0.94279 1.44311 1.30131 1.04975 1.54737 1.20238 0.94898 0.99068 1.34377 0.93580 1.27240 1.06828 0.96122 0.96900 1.70885 0.98375 1.40160 1.49273 0.82831 0.71035 0.75238 0.76788 1.21465 1.20598 1.20341 1.20575 0.92736 0.93214 0.89364 1.21855 1.00505 0.94299 0.98652 1.22265 0.98996 0.84376 0.96786 1.22230 0.91366 1.00846 0.93195 0.89529 0.89615 0.89263 0.79337 0.83079 0.87258 0.86029 0.85045 0.93604 0.91414 0.92768 0.96458 0.94024 0.93330 0.93537 0.97231 0.89612 0.91283 0.89670 0.88619 0.81215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.28 10.03 71.23 0.71 0.44 16 2 C -0.13 -1.28 5.89 -19.81 -0.12 -1.40 16 3 C 0.11 1.47 10.85 84.71 0.92 2.39 16 4 N -0.50 -10.20 10.35 -194.76 -2.01 -12.21 16 5 C 0.13 2.97 10.77 85.02 0.92 3.89 16 6 C -0.19 -3.91 5.39 -19.99 -0.11 -4.02 16 7 C 0.56 14.89 7.45 86.78 0.65 15.54 16 8 O -0.57 -19.91 16.24 -3.88 -0.06 -19.97 16 9 N -0.60 -13.97 2.52 -820.83 -2.07 -16.04 16 10 C 0.06 1.00 4.92 86.35 0.42 1.42 16 11 C 0.03 0.74 6.60 72.08 0.48 1.21 16 12 O -0.38 -11.62 9.01 -148.98 -1.34 -12.97 16 13 C 0.13 4.13 0.68 -10.71 -0.01 4.13 16 14 C -0.14 -5.04 4.33 30.65 0.13 -4.91 16 15 C 0.16 6.91 6.29 86.36 0.54 7.46 16 16 N -0.62 -32.24 2.86 -699.90 -2.00 -34.24 16 17 C -0.36 -20.66 9.52 84.03 0.80 -19.86 16 18 H 0.05 2.69 7.91 -2.91 -0.02 2.67 16 19 C -0.07 -4.36 4.80 84.86 0.41 -3.95 16 20 N -0.94 -58.56 12.38 21.65 0.27 -58.30 16 21 Si 1.12 52.08 29.97 68.60 2.06 54.14 16 22 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 23 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 24 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 25 C 0.17 8.09 4.35 86.22 0.38 8.46 16 26 C -0.11 -4.26 5.09 30.51 0.16 -4.10 16 27 C 0.10 2.69 5.31 86.34 0.46 3.15 16 28 C -0.05 -0.65 7.21 22.73 0.16 -0.49 16 29 H 0.09 0.12 8.14 -2.38 -0.02 0.11 16 30 H 0.08 0.05 8.10 -2.39 -0.02 0.03 16 31 H 0.09 0.02 8.09 -2.39 -0.02 0.00 16 32 H 0.19 1.16 8.06 -2.91 -0.02 1.13 16 33 H 0.15 3.64 7.96 -2.91 -0.02 3.62 16 34 H 0.11 1.19 7.95 -2.39 -0.02 1.17 16 35 H 0.12 1.39 4.53 -2.39 -0.01 1.38 16 36 H 0.13 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.05 1.11 6.29 -2.39 -0.02 1.10 16 38 H 0.07 2.25 6.16 -2.39 -0.01 2.23 16 39 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.02 0.78 7.83 -2.38 -0.02 0.76 16 41 H 0.04 1.88 7.93 -2.39 -0.02 1.87 16 42 H 0.26 16.19 6.37 -92.71 -0.59 15.60 16 43 H 0.05 2.55 6.24 -2.39 -0.01 2.54 16 44 H 0.01 0.49 7.48 -2.39 -0.02 0.48 16 45 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 46 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 47 H 0.08 2.65 7.05 -2.39 -0.02 2.63 16 48 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 49 H 0.17 1.34 5.75 -2.91 -0.02 1.33 16 Total: -1.00 -78.60 376.67 2.87 -75.72 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 1.14 Total: 14.52 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: 6.90 Total: 9.35 kcal Atomic # 7 Polarization: -114.97 SS G_CDS: -5.82 Total: -120.79 kcal Atomic # 8 Polarization: -31.53 SS G_CDS: -1.40 Total: -32.94 kcal Atomic # 14 Polarization: 52.08 SS G_CDS: 2.06 Total: 54.14 kcal Total: -78.60 2.87 -75.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949060816.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.489 kcal (2) G-P(sol) polarization free energy of solvation -78.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds