Wall clock time and date at job start Wed Apr 1 2020 05:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36397 * 120.34768 * 2 1 4 4 C 1.40199 * 119.26539 * 179.97438 * 3 2 1 5 5 C 1.35343 * 119.94922 * 359.97438 * 4 3 2 6 6 N 1.35768 * 120.70116 * 0.02562 * 5 4 3 7 7 C 1.46502 * 119.62335 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.46408 * 90.00310 * 7 6 5 9 9 O 1.21276 * 120.00357 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99777 * 179.97438 * 8 7 6 11 11 C 1.46494 * 120.00198 * 180.02562 * 10 8 7 12 12 C 1.53584 * 112.66460 * 297.31693 * 11 10 8 13 13 C 1.54224 * 106.67451 * 238.57436 * 12 11 10 14 14 C 1.54754 * 104.15661 * 335.05191 * 13 12 11 15 15 C 1.54776 * 103.21877 * 37.80613 * 14 13 12 16 16 H 1.08996 * 112.61360 * 85.34804 * 15 14 13 17 17 N 1.46979 * 108.69308 * 209.81038 * 15 14 13 18 18 C 1.36934 * 125.58114 * 294.13563 * 17 15 14 19 19 H 1.08004 * 119.99682 * 359.97438 * 18 17 15 20 20 C 1.38810 * 120.00256 * 180.02562 * 18 17 15 21 21 N 1.31617 * 119.99678 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99897 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47233 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46748 * 119.99933 * 22 20 18 25 25 H 1.48504 * 109.46948 * 239.99568 * 22 20 18 26 26 C 1.47369 * 108.84046 * 114.15288 * 17 15 14 27 27 C 1.54863 * 104.82269 * 335.29645 * 26 17 15 28 28 C 1.34659 * 120.75068 * 0.25216 * 6 5 4 29 29 O 1.22059 * 119.98382 * 179.69712 * 28 6 5 30 30 H 1.09001 * 109.47147 * 0.02562 * 1 2 3 31 31 H 1.09007 * 109.47124 * 120.00161 * 1 2 3 32 32 H 1.08998 * 109.47765 * 240.00229 * 1 2 3 33 33 H 1.08000 * 120.36614 * 359.94885 * 3 2 1 34 34 H 1.08003 * 120.02607 * 179.97438 * 4 3 2 35 35 H 1.07996 * 119.64757 * 179.97438 * 5 4 3 36 36 H 1.08992 * 109.47050 * 330.00571 * 7 6 5 37 37 H 1.08995 * 109.47107 * 209.99774 * 7 6 5 38 38 H 0.97001 * 119.99537 * 0.02562 * 10 8 7 39 39 H 1.09002 * 110.01886 * 357.88093 * 12 11 10 40 40 H 1.09003 * 110.01719 * 119.27573 * 12 11 10 41 41 H 1.08997 * 110.49355 * 216.37906 * 13 12 11 42 42 H 1.08998 * 110.60535 * 93.77386 * 13 12 11 43 43 H 1.09005 * 110.66664 * 279.37494 * 14 13 12 44 44 H 1.08998 * 110.67226 * 156.23830 * 14 13 12 45 45 H 0.97007 * 119.99743 * 180.02562 * 21 20 18 46 46 H 1.09000 * 110.36968 * 216.46028 * 26 17 15 47 47 H 1.09000 * 110.46390 * 94.18410 * 26 17 15 48 48 H 1.09002 * 110.97038 * 278.95242 * 27 26 17 49 49 H 1.09006 * 110.97204 * 155.18942 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1771 0.0000 4 6 3.5979 1.1506 0.0005 5 6 4.2513 -0.0347 0.0016 6 7 3.5636 -1.2053 0.0016 7 6 4.2949 -2.4747 0.0022 8 6 4.5449 -2.9096 1.4233 9 8 4.1507 -2.2267 2.3447 10 7 5.2058 -4.0580 1.6702 11 6 5.4484 -4.4811 3.0516 12 6 6.3317 -3.4923 3.8269 13 6 7.5680 -4.2823 4.3024 14 6 7.0792 -5.7494 4.3635 15 6 6.1477 -5.8636 3.1327 16 1 6.6899 -6.0996 2.2171 17 7 5.1051 -6.8583 3.4218 18 6 5.3129 -8.1986 3.6102 19 1 6.3122 -8.6038 3.5499 20 6 4.2391 -9.0367 3.8775 21 7 3.0213 -8.5430 3.9504 22 14 4.5227 -10.8652 4.1338 23 1 5.9711 -11.1648 4.0018 24 1 4.0592 -11.2526 5.4904 25 1 3.7631 -11.6317 3.1135 26 6 3.7993 -6.1773 3.4753 27 6 4.1328 -4.7089 3.8371 28 6 2.2170 -1.2128 -0.0045 29 8 1.6129 -2.2734 -0.0100 30 1 -0.3633 1.0277 -0.0005 31 1 -0.3634 -0.5139 -0.8900 32 1 -0.3634 -0.5138 0.8900 33 1 1.6678 2.1190 -0.0008 34 1 4.1559 2.0753 0.0001 35 1 5.3311 -0.0494 0.0016 36 1 5.2476 -2.3454 -0.5112 37 1 3.7053 -3.2339 -0.5117 38 1 5.5208 -4.6044 0.9332 39 1 6.6393 -2.6755 3.1739 40 1 5.7871 -3.0995 4.6854 41 1 7.8810 -3.9429 5.2898 42 1 8.3854 -4.1818 3.5885 43 1 6.5247 -5.9322 5.2840 44 1 7.9190 -6.4387 4.2756 45 1 2.2709 -9.1286 4.1376 46 1 3.1696 -6.6240 4.2448 47 1 3.3040 -6.2261 2.5055 48 1 4.2945 -4.5985 4.9093 49 1 3.3498 -4.0343 3.4906 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000990685885.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:57 Heat of formation + Delta-G solvation = -2.663042 kcal Electronic energy + Delta-G solvation = -31462.126669 eV Core-core repulsion = 27390.475889 eV Total energy + Delta-G solvation = -4071.650780 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.60779 -40.09882 -38.15098 -36.92781 -35.21905 -34.27320 -33.52357 -31.56034 -31.28645 -29.96484 -28.43154 -27.29068 -26.74450 -25.85734 -23.84766 -23.25950 -22.57313 -21.30155 -19.99484 -19.70448 -18.91138 -17.59616 -17.47752 -17.26682 -16.99382 -16.32827 -15.65675 -15.32800 -15.09995 -14.85138 -14.60076 -14.17585 -14.00094 -13.84545 -13.55743 -13.23743 -12.99415 -12.88952 -12.74814 -12.42457 -12.30154 -12.17179 -12.01218 -11.79828 -11.71963 -11.64914 -11.17716 -10.99014 -10.85453 -10.70449 -10.55934 -10.37262 -10.12475 -10.06849 -9.97637 -9.94612 -9.76418 -9.61721 -9.34900 -8.66125 -8.61122 -7.94074 -6.85282 -5.63426 -3.07459 0.70633 1.81574 2.35525 2.68008 3.26650 3.39461 3.44437 3.47504 3.64905 4.36073 4.42041 4.47312 4.64175 4.69539 4.87916 4.93274 5.00034 5.10664 5.11167 5.14843 5.27718 5.45644 5.51522 5.64096 5.65459 5.70011 5.78715 5.83453 5.93348 5.96643 6.03380 6.07309 6.11702 6.18911 6.22802 6.32824 6.38275 6.39387 6.51059 6.58769 6.76255 6.79214 6.95418 6.97277 7.08788 7.57302 7.65031 7.67576 7.89708 7.99721 8.34558 8.38044 9.21825 9.82945 10.46900 11.38832 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015568 B = 0.003008 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.163595 B = 9305.459469 C =10523.173670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.206 4.206 3 C -0.026 4.026 4 C -0.231 4.231 5 C 0.137 3.863 6 N -0.478 5.478 7 C 0.069 3.931 8 C 0.501 3.499 9 O -0.524 6.524 10 N -0.699 5.699 11 C 0.161 3.839 12 C -0.109 4.109 13 C -0.124 4.124 14 C -0.129 4.129 15 C 0.162 3.838 16 H 0.046 0.954 17 N -0.596 5.596 18 C -0.222 4.222 19 H 0.077 0.923 20 C -0.010 4.010 21 N -0.918 5.918 22 Si 0.913 3.087 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.153 3.847 27 C -0.142 4.142 28 C 0.521 3.479 29 O -0.539 6.539 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.132 0.868 34 H 0.143 0.857 35 H 0.158 0.842 36 H 0.119 0.881 37 H 0.129 0.871 38 H 0.400 0.600 39 H 0.056 0.944 40 H 0.069 0.931 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.075 0.925 44 H 0.058 0.942 45 H 0.251 0.749 46 H 0.107 0.893 47 H 0.010 0.990 48 H 0.067 0.933 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.702 20.268 -9.504 23.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.210 4.210 3 C -0.047 4.047 4 C -0.254 4.254 5 C 0.010 3.990 6 N -0.188 5.188 7 C -0.057 4.057 8 C 0.285 3.715 9 O -0.399 6.399 10 N -0.350 5.350 11 C 0.075 3.925 12 C -0.148 4.148 13 C -0.162 4.162 14 C -0.169 4.169 15 C 0.054 3.946 16 H 0.064 0.936 17 N -0.320 5.320 18 C -0.350 4.350 19 H 0.095 0.905 20 C -0.206 4.206 21 N -0.566 5.566 22 Si 0.743 3.257 23 H -0.206 1.206 24 H -0.218 1.218 25 H -0.218 1.218 26 C 0.028 3.972 27 C -0.181 4.181 28 C 0.322 3.678 29 O -0.420 6.420 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.150 0.850 34 H 0.161 0.839 35 H 0.175 0.825 36 H 0.137 0.863 37 H 0.147 0.853 38 H 0.235 0.765 39 H 0.074 0.926 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.077 0.923 45 H 0.062 0.938 46 H 0.125 0.875 47 H 0.028 0.972 48 H 0.085 0.915 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.882 19.805 -8.797 22.214 hybrid contribution 0.432 -1.156 -0.264 1.262 sum 5.314 18.649 -9.060 21.404 Atomic orbital electron populations 1.20409 0.89126 1.01853 1.02982 1.20789 0.97845 0.91940 1.10440 1.21306 0.93898 0.97883 0.91650 1.20548 0.94633 0.97099 1.13094 1.21844 0.98267 0.84831 0.94054 1.44988 1.07990 1.06389 1.59408 1.21836 0.99278 0.87513 0.97090 1.20486 0.78412 0.81879 0.90717 1.90732 1.49745 1.54053 1.45409 1.45797 1.57415 1.22763 1.08989 1.21675 0.96826 0.93823 0.80212 1.22248 0.95910 0.96983 0.99633 1.22358 0.96926 0.96622 1.00313 1.22936 0.99192 0.94190 1.00560 1.21791 0.90437 0.86994 0.95366 0.93636 1.44541 1.01534 1.03134 1.82780 1.19059 0.93507 0.81468 1.40972 0.90470 1.24801 0.95313 0.98223 1.02241 1.69826 0.98080 1.33064 1.55632 0.86030 0.77217 0.84969 0.77437 1.20572 1.21784 1.21821 1.21958 0.88469 0.86292 1.00471 1.23329 0.95700 1.00417 0.98685 1.16945 0.80420 0.91245 0.79146 1.90990 1.66342 1.32693 1.52005 0.91688 0.91372 0.91166 0.85042 0.83892 0.82472 0.86326 0.85271 0.76537 0.92553 0.91197 0.92244 0.92350 0.90672 0.92293 0.93759 0.87488 0.97221 0.91472 0.91391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.95 9.64 36.00 0.35 -0.61 16 2 C -0.21 -2.58 5.90 -104.42 -0.62 -3.19 16 3 C -0.03 -0.24 9.72 -39.51 -0.38 -0.62 16 4 C -0.23 -1.84 10.01 -39.88 -0.40 -2.24 16 5 C 0.14 1.21 10.28 -16.84 -0.17 1.04 16 6 N -0.48 -5.85 2.07 -121.07 -0.25 -6.10 16 7 C 0.07 0.76 5.82 -5.19 -0.03 0.73 16 8 C 0.50 7.56 7.12 -10.98 -0.08 7.48 16 9 O -0.52 -9.78 14.29 5.56 0.08 -9.70 16 10 N -0.70 -10.54 5.23 -45.35 -0.24 -10.78 16 11 C 0.16 2.85 0.74 -129.38 -0.10 2.75 16 12 C -0.11 -1.71 5.34 -25.79 -0.14 -1.85 16 13 C -0.12 -1.78 6.84 -25.17 -0.17 -1.95 16 14 C -0.13 -2.28 6.21 -24.87 -0.15 -2.43 16 15 C 0.16 3.18 3.67 -65.60 -0.24 2.93 16 16 H 0.05 0.86 7.96 -51.93 -0.41 0.45 16 17 N -0.60 -14.69 3.03 -161.14 -0.49 -15.18 16 18 C -0.22 -5.99 10.01 -15.06 -0.15 -6.14 16 19 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 20 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 21 N -0.92 -27.00 10.07 55.49 0.56 -26.44 16 22 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 C 0.15 3.84 5.90 -2.58 -0.02 3.82 16 27 C -0.14 -3.02 5.72 -24.74 -0.14 -3.16 16 28 C 0.52 8.01 7.39 -15.45 -0.11 7.90 16 29 O -0.54 -10.45 16.08 4.86 0.08 -10.37 16 30 H 0.06 0.51 7.89 -51.93 -0.41 0.10 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.13 0.83 7.95 -52.49 -0.42 0.41 16 34 H 0.14 0.71 8.06 -52.48 -0.42 0.28 16 35 H 0.16 0.83 8.04 -52.49 -0.42 0.41 16 36 H 0.12 0.74 8.01 -51.93 -0.42 0.32 16 37 H 0.13 1.54 7.38 -51.93 -0.38 1.16 16 38 H 0.40 5.11 8.48 -40.82 -0.35 4.77 16 39 H 0.06 0.83 7.65 -51.93 -0.40 0.43 16 40 H 0.07 1.17 7.37 -51.93 -0.38 0.79 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 1.50 8.09 -51.93 -0.42 1.08 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 46 H 0.11 3.06 5.83 -51.93 -0.30 2.76 16 47 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 48 H 0.07 1.42 7.62 -51.93 -0.40 1.03 16 49 H 0.07 1.53 6.53 -51.93 -0.34 1.19 16 LS Contribution 389.30 15.07 5.87 5.87 Total: -1.00 -36.00 389.30 -9.62 -45.62 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -7.55 Total: 6.02 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: -2.65 Total: 4.09 kcal Atomic # 7 Polarization: -58.09 SS G_CDS: -0.42 Total: -58.50 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: 0.16 Total: -20.07 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.00 -9.62 -45.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990685885.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.958 kcal (2) G-P(sol) polarization free energy of solvation -36.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds