Wall clock time and date at job start Wed Apr 1 2020 05:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36397 * 120.34768 * 2 1 4 4 C 1.40199 * 119.26539 * 179.97438 * 3 2 1 5 5 C 1.35343 * 119.94922 * 359.97438 * 4 3 2 6 6 N 1.35768 * 120.70116 * 0.02562 * 5 4 3 7 7 C 1.46502 * 119.62335 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.46408 * 90.00310 * 7 6 5 9 9 O 1.21276 * 120.00357 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99777 * 179.97438 * 8 7 6 11 11 C 1.46494 * 120.00198 * 180.02562 * 10 8 7 12 12 C 1.53584 * 112.66460 * 297.31693 * 11 10 8 13 13 C 1.54224 * 106.67451 * 238.57436 * 12 11 10 14 14 C 1.54754 * 104.15661 * 335.05191 * 13 12 11 15 15 C 1.54776 * 103.21877 * 37.80613 * 14 13 12 16 16 H 1.08996 * 112.61360 * 85.34804 * 15 14 13 17 17 N 1.46979 * 108.69308 * 209.81038 * 15 14 13 18 18 C 1.36934 * 125.58114 * 294.13563 * 17 15 14 19 19 H 1.08004 * 119.99682 * 359.97438 * 18 17 15 20 20 C 1.38810 * 120.00256 * 180.02562 * 18 17 15 21 21 N 1.31617 * 119.99678 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99897 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47233 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46748 * 119.99933 * 22 20 18 25 25 H 1.48504 * 109.46948 * 239.99568 * 22 20 18 26 26 C 1.47369 * 108.84046 * 114.15288 * 17 15 14 27 27 C 1.54863 * 104.82269 * 335.29645 * 26 17 15 28 28 C 1.34659 * 120.75068 * 0.25216 * 6 5 4 29 29 O 1.22059 * 119.98382 * 179.69712 * 28 6 5 30 30 H 1.09001 * 109.47147 * 0.02562 * 1 2 3 31 31 H 1.09007 * 109.47124 * 120.00161 * 1 2 3 32 32 H 1.08998 * 109.47765 * 240.00229 * 1 2 3 33 33 H 1.08000 * 120.36614 * 359.94885 * 3 2 1 34 34 H 1.08003 * 120.02607 * 179.97438 * 4 3 2 35 35 H 1.07996 * 119.64757 * 179.97438 * 5 4 3 36 36 H 1.08992 * 109.47050 * 330.00571 * 7 6 5 37 37 H 1.08995 * 109.47107 * 209.99774 * 7 6 5 38 38 H 0.97001 * 119.99537 * 0.02562 * 10 8 7 39 39 H 1.09002 * 110.01886 * 357.88093 * 12 11 10 40 40 H 1.09003 * 110.01719 * 119.27573 * 12 11 10 41 41 H 1.08997 * 110.49355 * 216.37906 * 13 12 11 42 42 H 1.08998 * 110.60535 * 93.77386 * 13 12 11 43 43 H 1.09005 * 110.66664 * 279.37494 * 14 13 12 44 44 H 1.08998 * 110.67226 * 156.23830 * 14 13 12 45 45 H 0.97007 * 119.99743 * 180.02562 * 21 20 18 46 46 H 1.09000 * 110.36968 * 216.46028 * 26 17 15 47 47 H 1.09000 * 110.46390 * 94.18410 * 26 17 15 48 48 H 1.09002 * 110.97038 * 278.95242 * 27 26 17 49 49 H 1.09006 * 110.97204 * 155.18942 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1771 0.0000 4 6 3.5979 1.1506 0.0005 5 6 4.2513 -0.0347 0.0016 6 7 3.5636 -1.2053 0.0016 7 6 4.2949 -2.4747 0.0022 8 6 4.5449 -2.9096 1.4233 9 8 4.1507 -2.2267 2.3447 10 7 5.2058 -4.0580 1.6702 11 6 5.4484 -4.4811 3.0516 12 6 6.3317 -3.4923 3.8269 13 6 7.5680 -4.2823 4.3024 14 6 7.0792 -5.7494 4.3635 15 6 6.1477 -5.8636 3.1327 16 1 6.6899 -6.0996 2.2171 17 7 5.1051 -6.8583 3.4218 18 6 5.3129 -8.1986 3.6102 19 1 6.3122 -8.6038 3.5499 20 6 4.2391 -9.0367 3.8775 21 7 3.0213 -8.5430 3.9504 22 14 4.5227 -10.8652 4.1338 23 1 5.9711 -11.1648 4.0018 24 1 4.0592 -11.2526 5.4904 25 1 3.7631 -11.6317 3.1135 26 6 3.7993 -6.1773 3.4753 27 6 4.1328 -4.7089 3.8371 28 6 2.2170 -1.2128 -0.0045 29 8 1.6129 -2.2734 -0.0100 30 1 -0.3633 1.0277 -0.0005 31 1 -0.3634 -0.5139 -0.8900 32 1 -0.3634 -0.5138 0.8900 33 1 1.6678 2.1190 -0.0008 34 1 4.1559 2.0753 0.0001 35 1 5.3311 -0.0494 0.0016 36 1 5.2476 -2.3454 -0.5112 37 1 3.7053 -3.2339 -0.5117 38 1 5.5208 -4.6044 0.9332 39 1 6.6393 -2.6755 3.1739 40 1 5.7871 -3.0995 4.6854 41 1 7.8810 -3.9429 5.2898 42 1 8.3854 -4.1818 3.5885 43 1 6.5247 -5.9322 5.2840 44 1 7.9190 -6.4387 4.2756 45 1 2.2709 -9.1286 4.1376 46 1 3.1696 -6.6240 4.2448 47 1 3.3040 -6.2261 2.5055 48 1 4.2945 -4.5985 4.9093 49 1 3.3498 -4.0343 3.4906 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000990685885.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:56 Heat of formation + Delta-G solvation = -26.934849 kcal Electronic energy + Delta-G solvation = -31463.179173 eV Core-core repulsion = 27390.475889 eV Total energy + Delta-G solvation = -4072.703284 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.55865 -41.48828 -39.53890 -37.95013 -36.18958 -35.97457 -34.83533 -33.38306 -32.25450 -31.59326 -29.55045 -28.44274 -28.10912 -27.29545 -25.76822 -24.24211 -23.38346 -22.72493 -21.63462 -21.11195 -20.30744 -18.94637 -18.62873 -18.46366 -18.18355 -17.41025 -16.94703 -16.83473 -16.42994 -16.29376 -15.74836 -15.48410 -15.18159 -15.14682 -14.73848 -14.70912 -14.54625 -13.97106 -13.85612 -13.74920 -13.48347 -13.27918 -13.19782 -13.06038 -12.99757 -12.92510 -12.82108 -12.68798 -12.42879 -12.36480 -12.00127 -11.90110 -11.73854 -11.65271 -11.50571 -11.26523 -11.23165 -11.03467 -10.76695 -10.57488 -10.02761 -8.90052 -8.81748 -7.75807 -5.21670 -0.07469 0.97454 1.44062 1.45825 1.46767 1.52422 1.57013 2.16767 2.49071 2.72890 3.31936 3.34249 3.57915 3.62947 3.70554 3.80223 3.91799 3.93973 4.00400 4.13661 4.24471 4.26492 4.32689 4.39077 4.39483 4.45478 4.56235 4.60668 4.74522 4.79543 4.80210 4.85752 4.91902 4.93791 5.07647 5.14620 5.19801 5.22233 5.27208 5.31505 5.44444 5.45116 5.49816 5.62466 5.64112 5.70934 5.79702 6.08773 6.26971 6.48114 7.00370 7.08188 7.16388 7.77726 8.41974 9.25893 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015568 B = 0.003008 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.163595 B = 9305.459469 C =10523.173670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.256 4.256 3 C 0.000 4.000 4 C -0.226 4.226 5 C 0.130 3.870 6 N -0.480 5.480 7 C 0.073 3.927 8 C 0.500 3.500 9 O -0.562 6.562 10 N -0.696 5.696 11 C 0.172 3.828 12 C -0.101 4.101 13 C -0.107 4.107 14 C -0.125 4.125 15 C 0.154 3.846 16 H 0.065 0.935 17 N -0.611 5.611 18 C -0.222 4.222 19 H 0.090 0.910 20 C -0.075 4.075 21 N -0.955 5.955 22 Si 0.979 3.021 23 H -0.259 1.259 24 H -0.297 1.297 25 H -0.298 1.298 26 C 0.164 3.836 27 C -0.130 4.130 28 C 0.497 3.503 29 O -0.609 6.609 30 H 0.099 0.901 31 H 0.054 0.946 32 H 0.041 0.959 33 H 0.167 0.833 34 H 0.186 0.814 35 H 0.203 0.797 36 H 0.181 0.819 37 H 0.116 0.884 38 H 0.413 0.587 39 H 0.075 0.925 40 H 0.055 0.945 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.045 0.955 44 H 0.069 0.931 45 H 0.243 0.757 46 H 0.067 0.933 47 H -0.025 1.025 48 H 0.063 0.937 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.081 23.248 -10.672 27.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.260 4.260 3 C -0.021 4.021 4 C -0.248 4.248 5 C 0.004 3.996 6 N -0.188 5.188 7 C -0.052 4.052 8 C 0.286 3.714 9 O -0.441 6.441 10 N -0.347 5.347 11 C 0.085 3.915 12 C -0.140 4.140 13 C -0.145 4.145 14 C -0.165 4.165 15 C 0.047 3.953 16 H 0.082 0.918 17 N -0.335 5.335 18 C -0.350 4.350 19 H 0.108 0.892 20 C -0.266 4.266 21 N -0.605 5.605 22 Si 0.808 3.192 23 H -0.183 1.183 24 H -0.224 1.224 25 H -0.225 1.225 26 C 0.039 3.961 27 C -0.170 4.170 28 C 0.302 3.698 29 O -0.496 6.496 30 H 0.117 0.883 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.185 0.815 34 H 0.203 0.797 35 H 0.220 0.780 36 H 0.198 0.802 37 H 0.134 0.866 38 H 0.250 0.750 39 H 0.094 0.906 40 H 0.074 0.926 41 H 0.095 0.905 42 H 0.107 0.893 43 H 0.063 0.937 44 H 0.088 0.912 45 H 0.052 0.948 46 H 0.085 0.915 47 H -0.007 1.007 48 H 0.082 0.918 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.352 22.835 -9.996 26.623 hybrid contribution -0.873 -1.955 0.087 2.143 sum 8.479 20.880 -9.909 24.618 Atomic orbital electron populations 1.20365 0.89213 1.03308 1.01036 1.20902 0.98336 0.92271 1.14499 1.21806 0.94903 0.97871 0.87531 1.21162 0.94215 0.98533 1.10894 1.22732 1.00366 0.83759 0.92735 1.45059 1.07344 1.07915 1.58477 1.21976 1.01639 0.87205 0.94400 1.21142 0.77075 0.81141 0.92051 1.90713 1.50984 1.55286 1.47071 1.45724 1.57648 1.23092 1.08269 1.21475 0.94455 0.94050 0.81515 1.22168 0.95824 0.96933 0.99061 1.22298 0.96776 0.93184 1.02250 1.22798 0.98609 0.97270 0.97841 1.22112 0.89830 0.86387 0.96945 0.91775 1.44729 1.02469 1.03509 1.82839 1.19483 0.93826 0.82625 1.39104 0.89194 1.25669 0.95205 1.02564 1.03186 1.70110 0.98823 1.34054 1.57522 0.84985 0.77953 0.79813 0.76453 1.18342 1.22402 1.22502 1.21547 0.88649 0.88705 0.97220 1.23100 0.97685 0.97111 0.99089 1.17533 0.81654 0.91453 0.79176 1.90934 1.67873 1.34773 1.56005 0.88278 0.92695 0.94038 0.81537 0.79657 0.78046 0.80207 0.86640 0.75041 0.90586 0.92598 0.90469 0.89263 0.93661 0.91211 0.94759 0.91474 1.00721 0.91845 0.93201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.93 9.64 71.24 0.69 -1.24 16 2 C -0.26 -6.45 5.90 -19.73 -0.12 -6.57 16 3 C 0.00 0.01 9.72 22.32 0.22 0.22 16 4 C -0.23 -2.54 10.01 22.08 0.22 -2.32 16 5 C 0.13 1.76 10.28 83.42 0.86 2.61 16 6 N -0.48 -11.09 2.07 -655.08 -1.36 -12.45 16 7 C 0.07 1.51 5.82 85.63 0.50 2.01 16 8 C 0.50 14.61 7.12 87.66 0.62 15.24 16 9 O -0.56 -20.91 14.29 -3.02 -0.04 -20.95 16 10 N -0.70 -20.19 5.23 -415.80 -2.18 -22.36 16 11 C 0.17 5.97 0.74 5.19 0.00 5.98 16 12 C -0.10 -2.91 5.34 31.21 0.17 -2.74 16 13 C -0.11 -2.65 6.84 31.61 0.22 -2.44 16 14 C -0.13 -4.18 6.21 31.80 0.20 -3.98 16 15 C 0.15 5.84 3.67 46.24 0.17 6.01 16 16 H 0.06 2.25 7.96 -2.39 -0.02 2.23 16 17 N -0.61 -30.87 3.03 -663.71 -2.01 -32.88 16 18 C -0.22 -12.11 10.01 84.03 0.84 -11.27 16 19 H 0.09 4.60 7.83 -2.91 -0.02 4.58 16 20 C -0.07 -4.28 5.49 84.86 0.47 -3.81 16 21 N -0.95 -59.42 10.07 21.65 0.22 -59.21 16 22 Si 0.98 46.27 29.55 68.60 2.03 48.30 16 23 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 24 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 25 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 26 C 0.16 8.82 5.90 86.85 0.51 9.33 16 27 C -0.13 -5.82 5.72 31.89 0.18 -5.64 16 28 C 0.50 15.92 7.39 84.82 0.63 16.55 16 29 O -0.61 -25.86 16.08 -5.51 -0.09 -25.95 16 30 H 0.10 1.50 7.89 -2.39 -0.02 1.48 16 31 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.17 1.33 7.95 -2.91 -0.02 1.30 16 34 H 0.19 0.56 8.06 -2.91 -0.02 0.54 16 35 H 0.20 0.84 8.04 -2.91 -0.02 0.82 16 36 H 0.18 1.40 8.01 -2.39 -0.02 1.38 16 37 H 0.12 2.81 7.38 -2.39 -0.02 2.79 16 38 H 0.41 9.83 8.48 -92.71 -0.79 9.04 16 39 H 0.08 1.93 7.65 -2.39 -0.02 1.91 16 40 H 0.06 1.78 7.37 -2.39 -0.02 1.77 16 41 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.04 1.78 8.09 -2.38 -0.02 1.76 16 44 H 0.07 2.17 8.14 -2.39 -0.02 2.16 16 45 H 0.24 14.81 8.31 -92.70 -0.77 14.04 16 46 H 0.07 4.16 5.83 -2.39 -0.01 4.15 16 47 H -0.03 -1.49 8.14 -2.39 -0.02 -1.51 16 48 H 0.06 2.83 7.62 -2.39 -0.02 2.81 16 49 H 0.05 2.39 6.53 -2.38 -0.02 2.38 16 Total: -1.00 -88.69 389.30 3.12 -85.58 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: 0.18 Total: 21.97 kcal Atomic # 6 Polarization: 11.58 SS G_CDS: 6.37 Total: 17.95 kcal Atomic # 7 Polarization: -121.57 SS G_CDS: -5.33 Total: -126.90 kcal Atomic # 8 Polarization: -46.76 SS G_CDS: -0.13 Total: -46.90 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -88.69 3.12 -85.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990685885.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.641 kcal (2) G-P(sol) polarization free energy of solvation -88.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds